mRNA_Ecto-sp13_S_contig6631.17493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6631.17493.1 vs. uniprot
Match: D7FTW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW7_ECTSI) HSP 1 Score: 1161 bits (3004), Expect = 0.000e+0 Identity = 618/688 (89.83%), Postives = 626/688 (90.99%), Query Frame = 1
Query: 1 TKSSILLEAASETLSEVEATSESKQKGGSSGFFGFSKKKASSLSSANSVGSKQIKTNAEGEGGKEQTLNTRYSQYVRCTGPRAPTPETFADALFNDNSSWAVTDRGGIEALVPVTRVLENTIDVLDDEDPDKASLQSSVNLITAAWRIRAKRWGDVLLDETNPNNATVPTAILDLLRTAYPIAQGVVQDLVDAVYNVLEFRKDDKDDGVWSKLSYYFPSTNQTGTPPPQPVAYDVGVNIARVIRKAADTATTGGSGADALLHFMDADDVGVYIEAEMRRRAKKNKADYFAARPGEDYDDEEEAAVVLEQRKRTWDKLGPLARLGRMYVDANADDKAYWDTLKLWEQSWITKDDTLSRDEQVDQDKRWTQEDYEVFQREYFRAPNPAGFLSELESDLALQAHVGINVRVVATDGEDNDALREAVTDAALAMTNEDWIIFRKIWFSQNNPEETNRVVEIIEDHVGNMQGIFKIPKDLKDATTTLHDAQRAFLFASQVSNLNGSEKRRLEERSVQVQNSLAGLGATEAEIATHRVSLRSLRREAAKLDQDREEVQRKIAQIEPATAGAELTEDQKADIAALRLXXXXXXXXXXXXXXXIVGLTGLISELSAEVAADRNALXXXXXXXXXXXXELSIEGTTYAEQKALAAIALQDAENVAAGRKHAQEQAQKDKVQEYYTQDTRFGNQRALK 2064
TKSSILLEAASETLSEVEATSESKQ GG ANSVGSKQIKT AEGEGGKEQTLNTRYSQYVRCTGPRAPTPETFADALFNDNSSWAVTDRGGIEALVPVTRVLENTIDVLDDEDPDK SLQSSVNLITAAWRIRAKRWGDVLLDETNPNNATVPTAILDLLRTAYPIAQGVVQDLVDAVYNVLEFRKDDKDDGVWSKLSYY+PS NQTGTP PQPVAYDVGVN+ARVIRKAADTATTGGSGADALLHFMDADDVGVYIEAEMRRRAKKNKADYFAARPGEDYDDEEEAAVVLEQRKRTWDKLGPLARLGRMYVDANADDKAYWDTLKLWEQSWITKDD LSRDEQVDQDKRWTQEDYEVFQREYFRAPNPAGFLSELESDL LQAH+GINVRVVATDG DNDALREAVTDAALAMTNEDWIIFRKIWFSQNNPEETNRVVEIIEDH+GNMQGIFKIPKDLKDATTTLHDAQRAF FASQ SNLNGSEKRRLEERSVQVQNSLAGLGA EAEIAT +VSL SLRREAAKLDQDREEVQRKIA+I PATA AELTEDQKA+IA LRL IVGLTGLISELSAEVAADRNAL ELSI+GT YAEQKALAAIALQDAENVAAGRKHAQEQAQKDKVQEYYTQDTRFGNQRA K
Sbjct: 711 TKSSILLEAASETLSEVEATSESKQSGGXXXXXXXXXXXXXXXXXANSVGSKQIKTTAEGEGGKEQTLNTRYSQYVRCTGPRAPTPETFADALFNDNSSWAVTDRGGIEALVPVTRVLENTIDVLDDEDPDKPSLQSSVNLITAAWRIRAKRWGDVLLDETNPNNATVPTAILDLLRTAYPIAQGVVQDLVDAVYNVLEFRKDDKDDGVWSKLSYYYPSNNQTGTPSPQPVAYDVGVNVARVIRKAADTATTGGSGADALLHFMDADDVGVYIEAEMRRRAKKNKADYFAARPGEDYDDEEEAAVVLEQRKRTWDKLGPLARLGRMYVDANADDKAYWDTLKLWEQSWITKDDKLSRDEQVDQDKRWTQEDYEVFQREYFRAPNPAGFLSELESDLVLQAHIGINVRVVATDGGDNDALREAVTDAALAMTNEDWIIFRKIWFSQNNPEETNRVVEIIEDHIGNMQGIFKIPKDLKDATTTLHDAQRAFGFASQASNLNGSEKRRLEERSVQVQNSLAGLGAIEAEIATRQVSLGSLRREAAKLDQDREEVQRKIAKIVPATADAELTEDQKAEIAVLRLEEGNIVKARNEVQRKIVGLTGLISELSAEVAADRNALQQEAAALEANISELSIKGTAYAEQKALAAIALQDAENVAAGRKHAQEQAQKDKVQEYYTQDTRFGNQRASK 1398
BLAST of mRNA_Ecto-sp13_S_contig6631.17493.1 vs. uniprot
Match: A0A6H5JF18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF18_9PHAE) HSP 1 Score: 864 bits (2232), Expect = 7.640e-311 Identity = 468/523 (89.48%), Postives = 482/523 (92.16%), Query Frame = 1
Query: 496 ATVPTAILDLLRTAYPIAQGVVQDLVDAVYNVLEFRKDDKDDGVWSKLSYYFPSTNQTGTPPPQPVAYDVGVNIARVIRKAADTATTGGSGADALLHFMDADDVGVYIEAEMRRRAKKNKADYFAARPGEDYDDEEEAAVVLEQRKRTWDKLGPLARLGRMYVDANADDKAYWDTLKLWEQSWITKDDTLSRDEQVDQDKRWTQEDYEVFQREYFRAPNPAGFLSELESDLALQAHVGINVRVVATDGEDNDALREAVTDAALAMTNEDWIIFRKIWFSQNNPEETNRVVEIIEDHVGNMQGIFKIPKDLKDATTTLHDAQRAFLFASQVSNLNGSEKRRLEERSVQVQNSLAGLGATEAEIATHRVSLRSLRREAAKLDQDREEVQRKIAQIEPATAGAELTEDQKADIAALRLXXXXXXXXXXXXXXXIVGLTGLISELSAEVAADRNALXXXXXXXXXXXXELSIEGTTYAEQKALAAIALQDAENVAAGRKHAQEQAQKDKVQEYYTQDTRFGNQRALK 2064
A VPTAILDLLRTAYPIAQGVVQDLVDAVYNVLEFRKDDKDDGVWSKLSYY+PSTNQTGTP PQPVAYDVGVN+ARVIRKAADTATTGGSGADALLHFMDADDVGVYIEAEMRRRAKKNKADYFAARPGEDYDDEEEAAVVLEQRKRTWDKLGPLARLGR+YVDANADDKAYWDTLKLWEQSWI KDD LSRDEQVDQDKRWTQEDYEVFQREYFRAPNPAGFLSELESDL LQAHVGINVRVVATDG DNDALREAVTDAALAMTNEDWIIFRKIWFSQNNPEET RVVEI+EDH+GNMQGIFKIPKDLKDATT LHDAQ AFL ASQ SNLNGSEKRRLEERS QVQNSLAGLGA EAEIATH+VSLRSLRREAAKLDQDRE+VQRKIA+I PATA AELTEDQ+A+IAALRL IVGL GLISELSAEVAAD XXXXXXXXXXXX I+GT YAEQKALAA+AL+DA+NVAAGRKHAQEQAQKDKVQEYY QDTRFGNQRA K
Sbjct: 8 AQVPTAILDLLRTAYPIAQGVVQDLVDAVYNVLEFRKDDKDDGVWSKLSYYYPSTNQTGTPSPQPVAYDVGVNVARVIRKAADTATTGGSGADALLHFMDADDVGVYIEAEMRRRAKKNKADYFAARPGEDYDDEEEAAVVLEQRKRTWDKLGPLARLGRVYVDANADDKAYWDTLKLWEQSWIRKDDKLSRDEQVDQDKRWTQEDYEVFQREYFRAPNPAGFLSELESDLVLQAHVGINVRVVATDGGDNDALREAVTDAALAMTNEDWIIFRKIWFSQNNPEETKRVVEIVEDHIGNMQGIFKIPKDLKDATTALHDAQSAFLLASQASNLNGSEKRRLEERSFQVQNSLAGLGAIEAEIATHQVSLRSLRREAAKLDQDREKVQRKIAKIVPATADAELTEDQEAEIAALRLKKSDIVKARNEVQRKIVGLAGLISELSAEVAADXXXXXXXXXXXXXXXXXXXIKGTAYAEQKALAAVALKDAKNVAAGRKHAQEQAQKDKVQEYYAQDTRFGNQRASK 530
BLAST of mRNA_Ecto-sp13_S_contig6631.17493.1 vs. uniprot
Match: A0A6H5JJ71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ71_9PHAE) HSP 1 Score: 207 bits (528), Expect = 3.750e-60 Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 1
Query: 91 GFFGFSKKKASSLSSANSVGSKQIKTNAEGEGGKEQTLNTRYSQYVRCTGPRAPTPETFADALFNDNSSWAVTDRGGIEALVPVTRVLENTIDVLDDEDPDKASLQ 408
GFFGF KKKA+SLSSANSVGSKQIKTNAEGEGGKEQTLNTRYSQYVRCTGPRAPTPETFADALFNDNSSWAVTDRGGIEALVPVTRVLENTIDVLDDEDPDKASLQ
Sbjct: 31 GFFGFKKKKAASLSSANSVGSKQIKTNAEGEGGKEQTLNTRYSQYVRCTGPRAPTPETFADALFNDNSSWAVTDRGGIEALVPVTRVLENTIDVLDDEDPDKASLQ 136
BLAST of mRNA_Ecto-sp13_S_contig6631.17493.1 vs. uniprot
Match: D7FI45_ECTSI (MACPF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI45_ECTSI) HSP 1 Score: 103 bits (258), Expect = 3.400e-19 Identity = 59/174 (33.91%), Postives = 92/174 (52.87%), Query Frame = 1
Query: 127 LSSANSVGSKQIKTNAEGEGGKEQTLNTRYSQYVRCTGPRAPTPETFADALFNDNSSWAVTDRGGIEALVPVTRVLENTIDVLDDEDPDKASLQSSVNLITAAWRIRAKRWGDVLLDETNPNNATVPTAILDLLRTAYPI--AQGVVQDLVDAVYNVLEFRKDDKDDGVWSKLS 642
+ SA+S G + + A + + + YVR GP TPE FA+ALF D SSW V DRG +EAL+P+T VLEN +D D P K L++++NL+T AW+ RA W + E +P VP ++ ++ ++ A ++ V ++ VLE + + +LS
Sbjct: 663 MKSASSSGVVKFHSTAGKNESESEDSRAMFQTYVRSMGPNVATPELFAEALFTDTSSWTVIDRGPMEALLPITSVLENMVDTFDPASPGKTKLENAMNLLTVAWQQRASAWKPL---EKDP---AVPASLRHMIGRSFATEDAHDKIRAAVVDLFEVLELELEANTEEAAERLS 830 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6631.17493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6631.17493.1 >prot_Ecto-sp13_S_contig6631.17493.1 ID=prot_Ecto-sp13_S_contig6631.17493.1|Name=mRNA_Ecto-sp13_S_contig6631.17493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=689bp TKSSILLEAASETLSEVEATSESKQKGGSSGFFGFSKKKASSLSSANSVGback to top mRNA from alignment at Ecto-sp13_S_contig6631:4157..8090- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6631.17493.1 ID=mRNA_Ecto-sp13_S_contig6631.17493.1|Name=mRNA_Ecto-sp13_S_contig6631.17493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3934bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6631:4157..8090- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6631:4157..8090- >mRNA_Ecto-sp13_S_contig6631.17493.1 ID=mRNA_Ecto-sp13_S_contig6631.17493.1|Name=mRNA_Ecto-sp13_S_contig6631.17493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2067bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6631:4157..8090- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |