mRNA_Ecto-sp13_S_contig66251.17483.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66251.17483.1
Unique NamemRNA_Ecto-sp13_S_contig66251.17483.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66251.17483.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.940e-12
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 YSSVERWSRGEDLFTKKFVFTPLAKDMHWSLACFCNLDKIQV 126
            YS V+ W+R  DLF KKFV  P+ +DMHWSLAC CNLDK++V
Sbjct:  424 YSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLEV 465
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BLAST of mRNA_Ecto-sp13_S_contig66251.17483.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.520e-12
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 YSSVERWSRGEDLFTKKFVFTPLAKDMHWSLACFCNLDKIQV 126
            YS V+ W+R  DLF KKFV  P+ +D+HWSLAC CNLDK++V
Sbjct:  726 YSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLEV 767
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BLAST of mRNA_Ecto-sp13_S_contig66251.17483.1 vs. uniprot
Match: A0A7S3ZZX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZX5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.140e-7
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 YSSVERWSRGEDLFTKKFVFTPLAKDMHWSLACFCNLDKIQVRYVS 138
            ++ VERW+RG D+F KKF+  P+ +D+HWSLA  C+  ++  R V+
Sbjct:  131 HARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVA 176
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BLAST of mRNA_Ecto-sp13_S_contig66251.17483.1 vs. uniprot
Match: A0A7S4A0P2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0P2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.180e-7
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 YSSVERWSRGEDLFTKKFVFTPLAKDMHWSLACFCNLDKIQVRYVS 138
            ++ VERW+RG D+F KKF+  P+ +D+HWSLA  C+  ++  R V+
Sbjct:  163 HARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVA 208
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BLAST of mRNA_Ecto-sp13_S_contig66251.17483.1 vs. uniprot
Match: A0A8J2SX84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX84_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.220e-7
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 YSSVERWSRGEDLFTKKFVFTPLAKDMHWSLACFCNLDKIQVRYVS 138
            ++ VERW+RG D+F KKF+  P+ +D+HWSLA  C+  ++  R V+
Sbjct:  322 HARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAVA 367
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BLAST of mRNA_Ecto-sp13_S_contig66251.17483.1 vs. uniprot
Match: A0A7S4A074_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A074_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-6
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   10 VERWSRGEDLFTKKFVFTPLAKDMHWSLACFCNLDKIQVRYVS 138
            VERW+RG D+F KKF+  P+ +D+HWSLA  C+  ++  R ++
Sbjct:  319 VERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAIA 361
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BLAST of mRNA_Ecto-sp13_S_contig66251.17483.1 vs. uniprot
Match: F0YQ64_AURAN (ULP_PROTEASE domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ64_AURAN)

HSP 1 Score: 51.6 bits (122), Expect = 3.780e-6
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 YSSVERWSRGEDLFTKKFVFTPLAKDMHWSLACFCN 108
            Y  VERW+RG D+F+KKF+  P+ + +HWSLA  C+
Sbjct:  332 YDRVERWTRGVDVFSKKFLVVPIVEHLHWSLAIVCH 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66251.17483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LDN6_ECTSI2.940e-1264.29ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE7.520e-1261.90ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A7S3ZZX5_9STRA4.140e-745.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A0P2_9STRA4.180e-745.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SX84_9STRA4.220e-745.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A074_9STRA1.080e-646.51Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YQ64_AURAN3.780e-652.78ULP_PROTEASE domain-containing protein n=2 Tax=Aur... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66251contigEcto-sp13_S_contig66251:164..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.6
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D8LDN6
Model size168
KEGG koko:K08596
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons1
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
EC3.4.22.68
Cds size168
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463912.5082011-CDS-Ecto-sp13_S_contig66251:163..3311681463912.5082011-CDS-Ecto-sp13_S_contig66251:163..331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66251 164..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66251.17483.1prot_Ecto-sp13_S_contig66251.17483.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66251 164..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66251.17483.1

>prot_Ecto-sp13_S_contig66251.17483.1 ID=prot_Ecto-sp13_S_contig66251.17483.1|Name=mRNA_Ecto-sp13_S_contig66251.17483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
YSSVERWSRGEDLFTKKFVFTPLAKDMHWSLACFCNLDKIQVRYVSTAVC
NLFMPS
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mRNA from alignment at Ecto-sp13_S_contig66251:164..331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66251.17483.1 ID=mRNA_Ecto-sp13_S_contig66251.17483.1|Name=mRNA_Ecto-sp13_S_contig66251.17483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66251:164..331- (Ectocarpus species13 EcNAP12_S_4_19m)
TACAGCAGCGTGGAGCGCTGGTCTAGGGGAGAGGATCTCTTCACGAAGAA
GTTCGTCTTCACACCGTTGGCAAAGGACATGCACTGGAGCCTCGCATGCT
TCTGCAACCTCGACAAAATCCAGGTACGATACGTCTCTACCGCGGTATGT
AATCTCTTCATGCCGTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66251:164..331-

>mRNA_Ecto-sp13_S_contig66251.17483.1 ID=mRNA_Ecto-sp13_S_contig66251.17483.1|Name=mRNA_Ecto-sp13_S_contig66251.17483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66251:164..331- (Ectocarpus species13 EcNAP12_S_4_19m)
TACAGCAGCGTGGAGCGCTGGTCTAGGGGAGAGGATCTCTTCACGAAGAA
GTTCGTCTTCACACCGTTGGCAAAGGACATGCACTGGAGCCTCGCATGCT
TCTGCAACCTCGACAAAATCCAGGTACGATACGTCTCTACCGCGGTATGT
AATCTCTTCATGCCGTCT
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