mRNA_Ecto-sp13_S_contig662.17476.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig662.17476.1
Unique NamemRNA_Ecto-sp13_S_contig662.17476.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig662.17476.1 vs. uniprot
Match: D7FIN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIN9_ECTSI)

HSP 1 Score: 469 bits (1206), Expect = 3.990e-161
Identity = 263/275 (95.64%), Postives = 267/275 (97.09%), Query Frame = 1 
Query:  508 RPRQSAWTVRGGYKHGSSAIASSSGSNSGNSVGQDGFAPSGETTAADSNIDKLAADLRATRDHXXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITASSTTNGEGGTPNTAGLATLKDIVAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRLMTGPGGKLTHLVACAWLAGMAFLCAYFGRQL 1332
            RPRQSAWTVRGGYKHGSSA AS+SGSNS NSVGQDGF P GETTA DSNIDKLAADLRATRDHXXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITA+ST NGEGGTPNTA L TL+DIVAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRL+TGPGGKLTHLVACAWLAGMAFLCAYFGRQL
Sbjct:    2 RPRQSAWTVRGGYKHGSSATASNSGSNSSNSVGQDGFPPRGETTAVDSNIDKLAADLRATRDHXXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITAASTMNGEGGTPNTAVLDTLRDIVAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRLLTGPGGKLTHLVACAWLAGMAFLCAYFGRQL 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig662.17476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIN9_ECTSI3.990e-16195.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig662contigEcto-sp13_S_contig662:11771..17008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1682
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000470.1
Cds size1068
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.916004-UTR-Ecto-sp13_S_contig662:11770..118361681463911.916004-UTR-Ecto-sp13_S_contig662:11770..11836Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig662 11771..11836 +
1681463911.9267535-UTR-Ecto-sp13_S_contig662:13442..136431681463911.9267535-UTR-Ecto-sp13_S_contig662:13442..13643Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig662 13443..13643 +
1681463911.961684-UTR-Ecto-sp13_S_contig662:16661..170081681463911.961684-UTR-Ecto-sp13_S_contig662:16661..17008Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig662 16662..17008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.9365358-CDS-Ecto-sp13_S_contig662:13643..142251681463911.9365358-CDS-Ecto-sp13_S_contig662:13643..14225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 13644..14225 +
1681463911.9489386-CDS-Ecto-sp13_S_contig662:16175..166611681463911.9489386-CDS-Ecto-sp13_S_contig662:16175..16661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 16176..16661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig662.17476.1prot_Ecto-sp13_S_contig662.17476.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig662 13644..16661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig662.17476.1

>prot_Ecto-sp13_S_contig662.17476.1 ID=prot_Ecto-sp13_S_contig662.17476.1|Name=mRNA_Ecto-sp13_S_contig662.17476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=356bp
MHHPTAHQLTTLCDLATHTMPSRYGNAPAKRLRFAGATLACLTLISTGVS
VIHETYSHQHRSLQRRSRTLRSGAQAWSRTRPRQSAWTVRGGYKHGSSAI
ASSSGSNSGNSVGQDGFAPSGETTAADSNIDKLAADLRATRDHIAADIHA
RGEAIAADLKGKQEKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVAN
RRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITASSTTNGEGG
TPNTAGLATLKDIVAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDR
VVLRGVRVTAWEHGAAAVWALTRLMTGPGGKLTHLVACAWLAGMAFLCAY
FGRQL*
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mRNA from alignment at Ecto-sp13_S_contig662:11771..17008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig662.17476.1 ID=mRNA_Ecto-sp13_S_contig662.17476.1|Name=mRNA_Ecto-sp13_S_contig662.17476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5238bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:11771..17008+ (Ectocarpus species13 EcNAP12_S_4_19m)
TAATCCAAGGCCCCTTTCGGCTGCCCGGGCTTCACGCATGGTTGTTCTTG
GTTGGTCATGATGATGACCTACAAGAGAGGGAGGCGTTATAGTGTTTTTA
TTTTAGAGAAAAAAAAAGTACCTGCAGTAGGCTCGTGCGTTGTTGTTAGA
TACACACGTTGTGACGAATGGTACATGTACCACACAGCAGCAGCAGTGTC
GAGTTGTGGGGGCGTGGGGGCGTCATTTGATACAGAAATGGGGGGTGGTG
TTCATCATCATCATGAATACGGCCCGCACCTCATCAATGCGGCCCGCATC
TCAAAATACATGCGGCCCGCACACTCCGCACGGAAATGCGGCCCACATGT
TTATGCCTAGAAAGATTCAAAACGCCGGCCGCACGAAGGAAGTGATCCGA
AAACGTTGTTGTGTAGCGAGACAAGCATGCACACATGGCAGCATCGAGAT
TTGTGGACAAACGTCCCCGTGTTGTGCTGGATTGTACTGTAACCTGGCGA
GGGCGCTAGTCTGGGACAAACTCTAATTTGATGGGCGTGGCGACCTTTGT
GTTCAGAGGCGCATCGTGCAAAAAACGCTCAACGCTCAAATTTGGGCCTC
ACACATTCCCAGGCGGGGTCATTTTGACGAAATCCCCGGGGTTTCGACAT
TTTCGGGCGCTTTTTTCAGCGCGCGCGCGGGATCCCACACAGAGCTAGTG
GAAATTATGGAAACATCCCAAGAATAAGCGTCAATCCTGGTCGCGAGGTC
TAGTGTATGGTGTTGGAAATAGTATATGGCGACACGAAGCCTACCAATGA
GGAGAATTTTATGGGTTTTAGAATGCGGCACGAGCGTCTATTCAATGAAG
AGTTCCTCGTTTTTAATATGGACTCACTAAATCCTTTACAATAGACTGCT
GCAAGCGTGCCGCCTAAACCCCCTGTGTTGCGCTGCAATCTTGGTCCGGA
GGGGGGGGGGGGGTTGGGGTGTTCCGCGATTTCCACATGGAGGGCCCCTT
GCACAGATGCTGCGCTGTGCTTTCTCGACGCACCGACCACGGAATGAAAA
CAAAGGTACCGTATTGTGCGTGTTATCGCACCACCGTGTTAGCGTTTTTT
TATAGCGTATTTCTCCACGACTAGGAGGGTGCGAACACCGACTGATACCT
CTCCGGAAAGCCCTTGACGAGATGTTTCCGAAACCATCCTTCTCGGAGGT
GACACCTCTCTGGTTGTGGAGAAATATGCGATAGAAAAACGCTAACACGG
GGGTGCGATAACACGCACAATTACGGTAGTGGTTTGGGACAGCTCGGGCT
AAATACTTGTTGCGCAAGTCTTAGATTGATTGCAATTGGTGCCTCAATGG
TGAAATGGGCTCCAGTCTGCTGGCATATACAGGCACCTCGGACGGACAGA
CAGACATGCATAGCGTCGTTCCCCCCCCCGCTCGGCACGAAGTTGTTCTT
TTTTCCGCGCATACACATTATGCACACGATCCCTTCAAATCAGCTTTCTT
GTGCATAACAAAAATATCTCTAGACTTTTCCATCTGTGGATAGAGATGGA
TTCGTTGTGTCATATTAAAAAAAAAAAAAAAATTGAACCCCTGGGCAACT
CTTCTAGCAAAAAAAAACTATTACAATTAGGAAAATGTAAACATGATCAT
TGTGTTCCTCATAATGCCACCTACCAACGAAAGAAGCACCAGTCTCCTGT
GCAGCTGCTCCTGTCCACACTAGCTACTAGGCTCAGACCTTTGTCAACCA
GCAGAGACCTTTCTCAACTGCAACCCAGGTCGGTGTGGGCGCGGGGGGCT
CCGTGGGTAGACCTTGCTGTTCCTCTGAGTACCAACTAAAATTGCTTTGA
ATGCGACATACACACGTGCTGCGATGCATCACCCAACTGCCCACCAATTG
ACAACTCTGTGCGATTTGGCGACACACACGATGCCATCACGTTACGGCAA
CGCCCCCGCCAAGAGGCTTCGATTTGCAGGGGCTACTTTGGCCTGCCTTA
CGCTGATCTCCACTGGAGTCTCAGTAATCCACGAAACATATTCCCACCAG
CATCGCTCCCTCCAACGGCGCTCGAGAACGCTCCGGTCTGGTGCTCAGGC
TTGGTCACGGACTCGGCCCCGACAGAGTGCTTGGACGGTTCGGGGAGGGT
ACAAGCACGGTAGCAGTGCCATCGCCAGCAGTAGTGGCAGCAACAGCGGC
AATAGTGTGGGGCAAGATGGGTTTGCGCCAAGCGGCGAAACAACAGCAGC
AGACAGCAACATCGACAAGTTGGCAGCGGATCTTCGAGCGACGAGGGATC
ACATCGCCGCTGATATCCATGCTCGTGGAGAGGCTATTGCAGCAGATCTC
AAGGGCAAGCAGGAAAAGATTGTGGATGAAGTGCTCAGGGAACGCTCACC
CGAGGCCTTTGGCGAGCTCGGAGGACATGCCTCGTCTTACGATTCAGCGA
CAGCGGTAAGCAGAGCGGGAGGACGAACATGTAGTGAGAGAGGCTCTCGG
CCGCGATTGAACAGGTATCAGCCCTTGCACCCATCCGCCCCCCGTTATGT
TGCAGCTTACTCTATTTTAATAGATGGGTGCATGTATGCATCGCGTGTTA
CAAACCTTTGGAGTCATCGCACACATTCGGGTAATGGAAGATAATGAATT
CCCAGCGGTAACCACGGTGTTCGAAGCTGTGCTTCATGCACAGGGGCGGG
GTATTTACATGTAACCGTCGTGTCTCCGGAGTGTTGGCTGGTGATTGATT
GACAATTAGCAAGAGCTAGTATGGTGGCAACCCGTGGAATTGCCGACCCG
CAGCCCTCCACGTTGGATGTTGGCAAGTCATTTGGTGTGTACTGGTGTGC
TTGTGGGGAGTAAAGGGGCTCTGCAGACAGGGGGGGGCTAACGCTGGGGG
GAGGCAGAGAAGTGCAGAGTACAGAAGTAGATTTGAAGCAGTTTCGGTTT
TCACGGGGTCCTCTCGCCGATCATTTCAAACGAAATATTTGGAACATACT
GAAAAGAGACTAGTTTAGGCGAGGTGGAGGACTGATCCGTTTTTGTTCTT
CGCTTTGCCAGCCGCTCCGCGGCCACGCAACAACCCTTGTAATGTGACTC
TCTGTATATGAGTTGACACATCCCTCATGATCTGTGGAGAGAAGTACACG
TGTCTGCTTTAATGCACTTTCCTCTCTCTCATGCACTCTCTCCCACTCAT
TTGTTTGCGTCTGCGTTGAAAAAAAAAACTCAAACGGAACCGGAACTAAC
AGTCCAACCTTCGTTTTGCCGACGAGTAACCAGACACATATCGTACAAAG
GAAAAGCGTTTCGCAGAAACAACATAACACCTTGAACGTATAGTCAGGGA
TTCGGCACAGATGTGGAGGTCGTTTACGGTAGTTTTTGATGTATAGATAT
ACACACACTATCTAAATGAATATATTGTAAGTCATACAGCATGTATGCTG
CAGCAGAGAAGGGTGCCGCTCTCTGTCTGGAGCATGCGAATCGAGTGGCG
ACTACATAGGTGAGAGTGTGTCACAAAACGGGTGACAGAGCAAGAAATTA
TCTTGTGCAAACTTATCAATACTCATGGTCAACCCTATCGAGAGACATGG
GCTTTCAGTCATTCGCGTGCGGGTAAGTCGGAGACGGAGCAGATTAAGCT
ACCAGTTATTCGACAAGCGTTGGCGGGATGACGGCCGTAACCCCTTTCGG
GTCAAGGGCGTATATACTTTCAACTGCTGGAAGTGTTCCTGTTTGTTTAC
TTCAGATTGTTCAACAAGCTCAGAACCAGAACACCCAAGTAGAACCGTTT
CTCGTATCGTTGTGATCCTCTGGACGTCGTATACATGATGGGATTCGACA
CATCAAGTTTGATTGTATACGTACTTGCTAGACAGTACACAACGTGGCCT
GGTGCGTCCACCGTACTCGGACTTATCTACGAAACCGGTCCGACATGTAT
GTGACAGCACAGCAGCTTGATTGTTTTGCAGGAATTCTGCTGAGATGACA
GCTGCTTGAATTCCTACCACCATAACAACGAACACCCTAGGCGTCTACTC
TCTTCAAGCGGATTCTCTTCCCCCCGATTTTGACGTATACCCCGCCTTCC
GTGACATTGACCAAGATGAGTCCCCGACCGCACCACGACAGCAGTAAGTA
CTGGTGCACCGGCGGCCCTAGCGTTGGGCATTTGACATTCTCGTTGGTGT
GGAGCTGGTGTTGGCAAGACTCAATTCACGACTGTCAATCGTTGCCTTCT
TTCTGCCTCGTCACGCCATCACCGCTTGGCTTTGCATACACAGTTCACAA
CCAACTTCAAACCCAAAAGCTGAGCGACTTGCGACTCCCCCCCTGCCCGT
CCTGATGGCCATCTCCTTTAAAACTCCACTTTATGCGTCATTGATCACAC
CGCAGGGCATGGACGTGGCGAATCGGCGATCGTTTTTCTTGGGCATCCGG
CGCGTGCTACTTCTGGTCCAGGTAGTGGAACTCCTAGCGGCATGTATGTG
GCAAGCCGCGTTCCCCTTCGGAGGACTTGCGGGATTCATCACAGCATCGT
CAACGACGAACGGGGAGGGTGGTACACCAAACACGGCTGGATTGGCTACG
TTGAAGGATATCGTTGCGGGCGAAGCAGGAGATGGCAGAGGGCCGTTGGG
TCTGGCCTTGGCGGCATGCTTGGCGCAGTTTTCTGTGTACACGATGCTGC
TGGTGTGGTTCGGGTGTGATAGGGTTGTGCTGAGGGGTGTGAGGGTCACT
GCGTGGGAGCACGGGGCTGCGGCGGTATGGGCTCTTACAAGGCTCATGAC
CGGGCCTGGAGGAAAGCTGACCCACCTTGTCGCGTGTGCGTGGCTGGCGG
GAATGGCCTTCTTGTGCGCATACTTCGGACGGCAGCTGTGAACAACAACC
AGTCACGTATATTTAGATGGAGAGATTTGGATGAACCTTAATGACGAAGA
ACATCAACGTGGGAGAGCGCCCGTGGCTAACTTGTCTAGTTTCCGTTGTA
GGGCATAAACAGTCAGTCACGCGGTGAAGGTGACCGCAGTGTGAAACGCT
AGGTTGGGGTGATTTTGCGGGCTTTTCGTCACAAGAAACGAGCTGCTGAA
TCATTTCAACAAGCGAATGCCGAAAAGAAGCTCTTTCTGATGGAGGTTTC
TTTCCCGCAAAAAATCTCAAACCGCGGTGTTGGAGATCTGCCTGAACTTG
GCCGCTGGCTCGGTGCACACAAGCCGCTCGGTGAACTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig662:11771..17008+

>mRNA_Ecto-sp13_S_contig662.17476.1 ID=mRNA_Ecto-sp13_S_contig662.17476.1|Name=mRNA_Ecto-sp13_S_contig662.17476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:11771..17008+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCACCCAACTGCCCACCAATTGACAACTCTGTGCGATTTGGCGAC
ACACACGATGCCATCACGTTACGGCAACGCCCCCGCCAAGAGGCTTCGAT
TTGCAGGGGCTACTTTGGCCTGCCTTACGCTGATCTCCACTGGAGTCTCA
GTAATCCACGAAACATATTCCCACCAGCATCGCTCCCTCCAACGGCGCTC
GAGAACGCTCCGGTCTGGTGCTCAGGCTTGGTCACGGACTCGGCCCCGAC
AGAGTGCTTGGACGGTTCGGGGAGGGTACAAGCACGGTAGCAGTGCCATC
GCCAGCAGTAGTGGCAGCAACAGCGGCAATAGTGTGGGGCAAGATGGGTT
TGCGCCAAGCGGCGAAACAACAGCAGCAGACAGCAACATCGACAAGTTGG
CAGCGGATCTTCGAGCGACGAGGGATCACATCGCCGCTGATATCCATGCT
CGTGGAGAGGCTATTGCAGCAGATCTCAAGGGCAAGCAGGAAAAGATTGT
GGATGAAGTGCTCAGGGAACGCTCACCCGAGGCCTTTGGCGAGCTCGGAG
GACATGCCTCGTCTTACGATTCAGCGACAGCGGGCATGGACGTGGCGAAT
CGGCGATCGTTTTTCTTGGGCATCCGGCGCGTGCTACTTCTGGTCCAGGT
AGTGGAACTCCTAGCGGCATGTATGTGGCAAGCCGCGTTCCCCTTCGGAG
GACTTGCGGGATTCATCACAGCATCGTCAACGACGAACGGGGAGGGTGGT
ACACCAAACACGGCTGGATTGGCTACGTTGAAGGATATCGTTGCGGGCGA
AGCAGGAGATGGCAGAGGGCCGTTGGGTCTGGCCTTGGCGGCATGCTTGG
CGCAGTTTTCTGTGTACACGATGCTGCTGGTGTGGTTCGGGTGTGATAGG
GTTGTGCTGAGGGGTGTGAGGGTCACTGCGTGGGAGCACGGGGCTGCGGC
GGTATGGGCTCTTACAAGGCTCATGACCGGGCCTGGAGGAAAGCTGACCC
ACCTTGTCGCGTGTGCGTGGCTGGCGGGAATGGCCTTCTTGTGCGCATAC
TTCGGACGGCAGCTGTGA
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