mRNA_Ecto-sp13_S_contig6618.17473.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6618.17473.1
Unique NamemRNA_Ecto-sp13_S_contig6618.17473.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: D7FUB1_ECTSI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 4.620e-23
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 WLFTTKQ-ERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEVR 153
            W  T KQ ERWSNPLMGWTST DPMSNM LSFSTPEQA+KFC+KRGWKYEV+
Sbjct:  122 WNLTFKQKERWSNPLMGWTSTGDPMSNMQLSFSTPEQAVKFCQKRGWKYEVK 173
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BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: A0A4Y2J3H8_ARAVE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2J3H8_ARAVE)

HSP 1 Score: 77.8 bits (190), Expect = 1.520e-16
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEV 150
            +ERW NPLMGW+ST DP+SNM++ FSTPE+AI+FCEK GW Y V
Sbjct:  114 RERWENPLMGWSSTGDPLSNMNVQFSTPEEAIQFCEKNGWPYYV 157
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BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: A0A401P3H8_SCYTO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401P3H8_SCYTO)

HSP 1 Score: 74.7 bits (182), Expect = 4.970e-16
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEVRKK 159
            +ERW NPLMGW STADP+SNM LSF+T E A+ F EK GW YE+ +K
Sbjct:   45 RERWENPLMGWASTADPLSNMELSFTTKEDALAFVEKNGWSYEIEEK 91
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BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: UPI0018F6BEC2 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F6BEC2)

HSP 1 Score: 75.9 bits (185), Expect = 6.080e-16
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEVRKK 159
            +ERW NPLMGW STADP+SNM LSFST E AI F EK GW YE+ +K
Sbjct:   98 RERWENPLMGWASTADPLSNMELSFSTKEDAIAFVEKNGWSYELEEK 144
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BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: A0A7L3ZZG8_9AVES (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L3ZZG8_9AVES)

HSP 1 Score: 75.1 bits (183), Expect = 6.780e-16
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEVRKK 159
            +ERW NPLMGW STADP+SNM LSFST E AI F EK GW Y+V +K
Sbjct:   72 RERWENPLMGWASTADPLSNMVLSFSTKEDAIAFAEKNGWSYDVEEK 118
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BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: A0A8J7T9C1_ATRSP (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7T9C1_ATRSP)

HSP 1 Score: 73.6 bits (179), Expect = 7.080e-16
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEVRKK 159
            +ERW NPLMGW STADP+SNM LSFS+ E AI F EK GW Y++++K
Sbjct:   18 RERWENPLMGWASTADPLSNMVLSFSSKEDAIAFAEKNGWSYDIQEK 64
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BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: A0A8B6BM85_MYTGA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BM85_MYTGA)

HSP 1 Score: 74.7 bits (182), Expect = 7.750e-16
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEV 150
            QERW NPLMGWTST DP+SN++ +F TPE AI F EK GWKY V
Sbjct:   63 QERWENPLMGWTSTGDPLSNLNCTFLTPEDAIAFVEKNGWKYHV 106
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BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: A0A091M1W0_CARIC (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=2 Tax=Cariama cristata TaxID=54380 RepID=A0A091M1W0_CARIC)

HSP 1 Score: 73.9 bits (180), Expect = 9.990e-16
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEVRKK 159
            +ERW NPLMGW STADP+SNM L+FST E AI F EK GW Y+V +K
Sbjct:   45 RERWENPLMGWASTADPLSNMVLTFSTKEDAIAFAEKNGWSYDVEEK 91
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: A0A091KQF4_9GRUI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=2 Tax=Chlamydotis macqueenii TaxID=187382 RepID=A0A091KQF4_9GRUI)

HSP 1 Score: 73.9 bits (180), Expect = 9.990e-16
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEVRKK 159
            +ERW NPLMGW STADP+SNM L+FST E AI F EK GW Y+V +K
Sbjct:   45 RERWENPLMGWASTADPLSNMVLTFSTKEDAIAFAEKNGWSYDVEEK 91
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Match: A0A094KI88_ANTCR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=3 Tax=Caprimulgidae TaxID=48283 RepID=A0A094KI88_ANTCR)

HSP 1 Score: 73.9 bits (180), Expect = 9.990e-16
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 QERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEVRKK 159
            +ERW NPLMGW STADP+SNM L+FST E AI F EK GW Y+V +K
Sbjct:   45 RERWENPLMGWASTADPLSNMVLTFSTKEDAIAFAEKNGWSYDVEEK 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6618.17473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB1_ECTSI4.620e-2382.69NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A4Y2J3H8_ARAVE1.520e-1670.45NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A401P3H8_SCYTO4.970e-1665.96NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
UPI0018F6BEC26.080e-1670.21NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7L3ZZG8_9AVES6.780e-1670.21NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A8J7T9C1_ATRSP7.080e-1665.96NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A8B6BM85_MYTGA7.750e-1670.45NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A091M1W0_CARIC9.990e-1668.09NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A091KQF4_9GRUI9.990e-1668.09NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A094KI88_ANTCR9.990e-1668.09NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6618contigEcto-sp13_S_contig6618:5706..5864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMammalia
Stop0
Start0
Seed ortholog score75.1
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog1026970.XP_008831168.1
Preferred nameNDUFS4
Model size159
KEGG koko:K03937
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001932,GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008137,GO:0008150,GO:0008152,GO:0008284,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010033,GO:0010243,GO:0010257,GO:0014070,GO:0014074,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019220,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0019932,GO:0019933,GO:0019935,GO:0022607,GO:0022900,GO:0022904,GO:0023052,GO:0030964,GO:0031090,GO:0031323,GO:0031399,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0035556,GO:0042127,GO:0042221,GO:0042325,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046683,GO:0048145,GO:0048146,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0050136,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051591,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0060322,GO:0065003,GO:0065007,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1901698,GO:1901700,GO:1902494,GO:1990204
Exons1
EggNOG free text desc.NADH dehydrogenase ubiquinone iron-sulfur protein 4, mitochondrial
EggNOG OGs35K59@314146,39W9V@33154,3BPI0@33208,3CUJ7@33213,3J2DT@40674,489CF@7711,495XB@7742,4Q1VS@9989,KOG3389@1,KOG3389@2759
Cds size159
COG Functional cat.C
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.7823493-CDS-Ecto-sp13_S_contig6618:5705..58641681463911.7823493-CDS-Ecto-sp13_S_contig6618:5705..5864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6618 5706..5864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6618.17473.1prot_Ecto-sp13_S_contig6618.17473.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6618 5706..5864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6618.17473.1

>prot_Ecto-sp13_S_contig6618.17473.1 ID=prot_Ecto-sp13_S_contig6618.17473.1|Name=mRNA_Ecto-sp13_S_contig6618.17473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
WLFTTKQERWSNPLMGWTSTADPMSNMHLSFSTPEQAIKFCEKRGWKYEV
RKK
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mRNA from alignment at Ecto-sp13_S_contig6618:5706..5864-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6618.17473.1 ID=mRNA_Ecto-sp13_S_contig6618.17473.1|Name=mRNA_Ecto-sp13_S_contig6618.17473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6618:5706..5864- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCTGTTCACCACAAAACAGGAGCGCTGGTCTAACCCCCTGATGGGATG
GACCAGCACCGCCGATCCGATGTCGAACATGCATCTCAGCTTCAGCACGC
CGGAGCAGGCGATTAAGTTCTGCGAGAAGAGGGGCTGGAAGTACGAGGTG
AGAAAAAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6618:5706..5864-

>mRNA_Ecto-sp13_S_contig6618.17473.1 ID=mRNA_Ecto-sp13_S_contig6618.17473.1|Name=mRNA_Ecto-sp13_S_contig6618.17473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6618:5706..5864- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCTGTTCACCACAAAACAGGAGCGCTGGTCTAACCCCCTGATGGGATG
GACCAGCACCGCCGATCCGATGTCGAACATGCATCTCAGCTTCAGCACGC
CGGAGCAGGCGATTAAGTTCTGCGAGAAGAGGGGCTGGAAGTACGAGGTG
AGAAAAAAA
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