mRNA_Ecto-sp13_S_contig66173.17471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66173.17471.1
Unique NamemRNA_Ecto-sp13_S_contig66173.17471.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: D7FS91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS91_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.400e-25
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            LCVLHLYETLG+WRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR
Sbjct:  124 LCVLHLYETLGKWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 171
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: A0A7S2UN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UN98_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.270e-19
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            L VLHLYETLG+WR+AEY+K+HFAES+NELHHLLIMEELGGN  F+DR
Sbjct:  157 LSVLHLYETLGKWRRAEYMKIHFAESWNELHHLLIMEELGGNARFQDR 204
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: A0A835Z1V4_9STRA (Putative alternative oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.530e-19
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            L VLHLYETLG WRQA+YLK+HFAES+NELHHLLIMEELGGN  F DR
Sbjct:   62 LSVLHLYETLGWWRQADYLKIHFAESWNELHHLLIMEELGGNDKFFDR 109
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: A0A7S2LGX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGX7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.240e-18
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            L VLHLYETLG+WR+A+YLK+HFAES+NELHHLLIMEELGGN  F DR
Sbjct:  114 LSVLHLYETLGRWRRAKYLKLHFAESWNELHHLLIMEELGGNDRFLDR 161
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: A0A6I5PFW2_9CYAN (Plastoquinol terminal oxidase n=1 Tax=Leptolyngbya sp. SIO3F4 TaxID=2607780 RepID=A0A6I5PFW2_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.080e-17
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            L VLHLYETLG WRQ ++LKVHFAES+NELHHLLIMEELGGN  + DR
Sbjct:   40 LSVLHLYETLGWWRQVDWLKVHFAESWNELHHLLIMEELGGNTYWVDR 87
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: K0SXL9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SXL9_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 1.100e-17
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            L VLHLYETLG+WR+A+YLK+HFAES+NELHHLLIMEELGG+  F DR
Sbjct:   85 LSVLHLYETLGKWRRAKYLKLHFAESWNELHHLLIMEELGGSERFLDR 132
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: A0A7I8LA95_SPIIN (Ubiquinol oxidase n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LA95_SPIIN)

HSP 1 Score: 81.3 bits (199), Expect = 2.660e-17
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            + VLHLYE+ G WR+A+YLKVHFAES+NELHHLLIMEELGGN L+ DR
Sbjct:   74 ISVLHLYESFGWWRRADYLKVHFAESWNELHHLLIMEELGGNALWFDR 121
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: A0A7I8JJQ7_SPIIN (Ubiquinol oxidase n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JJQ7_SPIIN)

HSP 1 Score: 81.3 bits (199), Expect = 3.020e-17
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            + VLHLYE+ G WR+A+YLKVHFAES+NELHHLLIMEELGGN L+ DR
Sbjct:   74 ISVLHLYESFGWWRRADYLKVHFAESWNELHHLLIMEELGGNALWFDR 121
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: UPI000E6F9A8A (ubiquinol oxidase 4, chloroplastic/chromoplastic-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F9A8A)

HSP 1 Score: 78.6 bits (192), Expect = 3.260e-17
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    7 VLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            VLHLYET G WR+A+YLKVHFAES+NE+HHLLIMEELGGN  + DR
Sbjct:    3 VLHLYETFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDR 48
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BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Match: UPI001C401E8A (plastoquinol terminal oxidase n=1 Tax=Anthocerotibacter panamensis TaxID=2857077 RepID=UPI001C401E8A)

HSP 1 Score: 79.3 bits (194), Expect = 6.860e-17
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR 144
            L VLHLYE+LG WR+A++LKVHFAE++NELHHLLIME LGGN L+ DR
Sbjct:   40 LSVLHLYESLGMWRKADWLKVHFAETWNELHHLLIMESLGGNELWADR 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66173.17471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS91_ECTSI4.400e-2597.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UN98_9STRA2.270e-1981.25Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A835Z1V4_9STRA8.530e-1983.33Putative alternative oxidase n=1 Tax=Tribonema min... [more]
A0A7S2LGX7_9STRA1.240e-1881.25Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6I5PFW2_9CYAN1.080e-1779.17Plastoquinol terminal oxidase n=1 Tax=Leptolyngbya... [more]
K0SXL9_THAOC1.100e-1779.17Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7I8LA95_SPIIN2.660e-1777.08Ubiquinol oxidase n=1 Tax=Spirodela intermedia Tax... [more]
A0A7I8JJQ7_SPIIN3.020e-1777.08Ubiquinol oxidase n=1 Tax=Spirodela intermedia Tax... [more]
UPI000E6F9A8A3.260e-1778.26ubiquinol oxidase 4, chloroplastic/chromoplastic-l... [more]
UPI001C401E8A6.860e-1775.00plastoquinol terminal oxidase n=1 Tax=Anthocerotib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66173contigEcto-sp13_S_contig66173:3..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.8
Seed ortholog evalue4.5e-20
Seed eggNOG ortholog2880.D7FS91
Model size144
KEGG rclassRC00061
KEGG koko:K17893
KEGG ReactionR09504
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006629,GO:0006720,GO:0006721,GO:0006996,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009579,GO:0009657,GO:0009916,GO:0009987,GO:0016043,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016491,GO:0016679,GO:0016682,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0046148,GO:0055114,GO:0071704,GO:0071840,GO:1901576
Exons2
EggNOG free text desc.ubiquinol:oxygen oxidoreductase activity
EggNOG OGs2CMS2@1,2QRMM@2759
EC1.10.3.11
Cds size144
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.680321-CDS-Ecto-sp13_S_contig66173:2..471681463911.680321-CDS-Ecto-sp13_S_contig66173:2..47Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66173 3..47 +
1681463911.6925535-CDS-Ecto-sp13_S_contig66173:634..7331681463911.6925535-CDS-Ecto-sp13_S_contig66173:634..733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66173 635..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66173.17471.1prot_Ecto-sp13_S_contig66173.17471.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66173 3..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66173.17471.1

>prot_Ecto-sp13_S_contig66173.17471.1 ID=prot_Ecto-sp13_S_contig66173.17471.1|Name=mRNA_Ecto-sp13_S_contig66173.17471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
LCVLHLYETLGQWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDR
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mRNA from alignment at Ecto-sp13_S_contig66173:3..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66173.17471.1 ID=mRNA_Ecto-sp13_S_contig66173.17471.1|Name=mRNA_Ecto-sp13_S_contig66173.17471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=731bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66173:3..733+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGCGTCCTTCACCTTTACGAGACGCTTGGCCAGTGGAGACAGGTGAG
CCGACCAGTGATCAGCAGCAGCAGCAACAGCAGCCCGTGGCTCGCGTGCT
TTTCTATGGCCTTGACTCTGCACGGTGGTTCTTAGTCGTTGCCGCCCCGA
GATTCCAAGTCATTCACGATGTGTATCGGAACACTTTGTGCCGACGATCA
GCAGCAGCAGCAGCCCGTGGCTCGTTTGCCAAGCGTTCTTTCTGTATAGG
TTGCCGGGGCACAGCTGCTTACTCAGTTGAATTTGAGAATTGTATTGTGT
CTTTTGAGTCTACACATTTGGTGTTGTTTCCGCCCTGAAATCCGGTACGC
GGTGTGTTCGGCAATATTGTTGTGAGGTGAGGACAACCACAACAACAGCA
ACAACGGCATCAGCCGTGCGAATGATTCCGTATTTTTCACACGTACGCGG
GTGGAATTCATCACCGACAAAAACAGTAATAATAGCATCAGCAACAACAA
CAACAACAACAACGACCACCATAAAAAACAAGTAACAGCGCTACATGTAG
ACACATCATCTACAACACCACCACCCTCCAACACCACCACCGACAACAAC
AACAACAACAACAACAATAACAACAACAACAGGCGGAGTACCTCAAGGTC
CACTTCGCCGAGAGCTACAACGAGCTTCACCACCTCCTCATCATGGAGGA
GCTCGGAGGGAACGTGCTCTTTAGAGACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66173:3..733+

>mRNA_Ecto-sp13_S_contig66173.17471.1 ID=mRNA_Ecto-sp13_S_contig66173.17471.1|Name=mRNA_Ecto-sp13_S_contig66173.17471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66173:3..733+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGCGTCCTTCACCTTTACGAGACGCTTGGCCAGTGGAGACAGGCGGA
GTACCTCAAGGTCCACTTCGCCGAGAGCTACAACGAGCTTCACCACCTCC
TCATCATGGAGGAGCTCGGAGGGAACGTGCTCTTTAGAGACAGG
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