mRNA_Ecto-sp13_S_contig66168.17469.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66168.17469.1
Unique NamemRNA_Ecto-sp13_S_contig66168.17469.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: D7FLK1_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK1_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.550e-24
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    7 VSLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            VSLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV
Sbjct:  417 VSLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 464
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: A0A329T2V8_9STRA (RRM domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329T2V8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.000e-11
Identity = 27/47 (57.45%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S++VQEY GLS+P +  P+  ++GK +LEE LLG+RF++SPN+FFQV
Sbjct:  581 SIYVQEYDGLSAPSDNDPVEHVFGKTKLEEHLLGMRFSVSPNAFFQV 627
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: D0NAM0_PHYIT (tRNA (Uracil-5-)-methyltransferase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NAM0_PHYIT)

HSP 1 Score: 64.3 bits (155), Expect = 9.570e-11
Identity = 26/47 (55.32%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S+++QEY GLS+P +  P+  ++GK +LEE LLG+RF++SPN+FFQV
Sbjct:  583 SVFIQEYEGLSAPSDNDPVEHVYGKTKLEEHLLGMRFSVSPNAFFQV 629
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: A0A2P4Y815_9STRA (23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y815_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-10
Identity = 26/47 (55.32%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S+++QEY GLS+P +  P+  ++GK +LEE LLG+RF++SPN+FFQV
Sbjct:  571 SIYMQEYEGLSAPSDNDPVEHVFGKTKLEEHLLGMRFSVSPNAFFQV 617
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: G4Z4X0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z4X0_PHYSP)

HSP 1 Score: 63.2 bits (152), Expect = 2.440e-10
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S ++QEY GLS+P +  P+  ++GK +LEE LLG+RF +SPN+FFQV
Sbjct:  579 SFYIQEYEGLSAPSDNDPVEHVFGKTKLEEHLLGMRFDVSPNAFFQV 625
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: A0A225WC87_9STRA (23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WC87_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S+++QEY GLS+P +  P+   +GK +LEE LLG+RF++SPN+FFQV
Sbjct:  558 SIFMQEYEGLSAPSDNDPVEHAFGKTKLEEHLLGMRFSVSPNAFFQV 604
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: H3GEE9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEE9_PHYRM)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 25/47 (53.19%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S+++QEY GLS+P +  P+  ++GK +L+E LLG+RF++SPN+FFQV
Sbjct:  589 SIYMQEYEGLSAPSDNDPVEHVFGKTKLDEHLLGMRFSVSPNAFFQV 635
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: A0A3R7XP75_9STRA (RRM domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XP75_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S+++QEY GLS+P +  P+  ++GK +LEE LLG+RF +SPN+FFQV
Sbjct:  592 SIYMQEYNGLSTPSDNDPVEHVFGKTKLEEHLLGMRFLVSPNAFFQV 638
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: A0A6G0X1W8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1W8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.570e-10
Identity = 27/47 (57.45%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S++VQEY G+S+P+E  P++ ++G+ ++EEELLGLRF IS N+FFQV
Sbjct:  558 SMFVQEYTGVSAPEEDHPVQHVYGETQIEEELLGLRFRISANAFFQV 604
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BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Match: A0A0P1AWZ6_PLAHL (23s rrna (Uracil-5-)-methyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWZ6_PLAHL)

HSP 1 Score: 62.4 bits (150), Expect = 4.570e-10
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   10 SLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV 150
            S++VQEY GLS+P +   +  ++GK +LEE LLG+RF+ISPN+FFQV
Sbjct:  580 SIYVQEYEGLSAPSDNDSVEHVFGKTKLEEHLLGMRFSISPNAFFQV 626
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66168.17469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK1_ECTSI9.550e-24100.00Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A329T2V8_9STRA7.000e-1157.45RRM domain-containing protein n=10 Tax=Phytophthor... [more]
D0NAM0_PHYIT9.570e-1155.32tRNA (Uracil-5-)-methyltransferase n=2 Tax=Phytoph... [more]
A0A2P4Y815_9STRA1.310e-1055.3223S rRNA (Uracil-5-)-methyltransferase RumA n=1 Ta... [more]
G4Z4X0_PHYSP2.440e-1055.32Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A225WC87_9STRA3.340e-1055.3223S rRNA (Uracil-5-)-methyltransferase RumA n=1 Ta... [more]
H3GEE9_PHYRM3.340e-1053.19Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3R7XP75_9STRA3.340e-1055.32RRM domain-containing protein n=2 Tax=Peronospora ... [more]
A0A6G0X1W8_9STRA4.570e-1057.45Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A0P1AWZ6_PLAHL4.570e-1057.4523s rrna (Uracil-5-)-methyltransferase n=1 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66168contigEcto-sp13_S_contig66168:574..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.1
Seed ortholog evalue7.9e-20
Seed eggNOG ortholog2880.D7FLK1
Preferred nameTRMT2A
Model size150
KEGG koko:K15331,ko:K15332
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Exons1
EggNOG free text desc.S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
EggNOG OGsCOG2265@1,KOG2187@2759
EC2.1.1.35
Cds size150
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.47805-CDS-Ecto-sp13_S_contig66168:573..7231681463911.47805-CDS-Ecto-sp13_S_contig66168:573..723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66168 574..723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66168.17469.1prot_Ecto-sp13_S_contig66168.17469.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66168 574..723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66168.17469.1

>prot_Ecto-sp13_S_contig66168.17469.1 ID=prot_Ecto-sp13_S_contig66168.17469.1|Name=mRNA_Ecto-sp13_S_contig66168.17469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
FQVSLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQV
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mRNA from alignment at Ecto-sp13_S_contig66168:574..723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66168.17469.1 ID=mRNA_Ecto-sp13_S_contig66168.17469.1|Name=mRNA_Ecto-sp13_S_contig66168.17469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66168:574..723+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCAGGTGTCTTTGTGGGTGCAGGAGTACGCGGGACTGTCATCCCCAGA
TGAGACGTCGCCGATGCGCTTGCTGTGGGGTAAGGAGCGGTTGGAGGAGG
AGCTTCTCGGCCTCCGCTTCACCATCTCGCCAAACTCCTTCTTCCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66168:574..723+

>mRNA_Ecto-sp13_S_contig66168.17469.1 ID=mRNA_Ecto-sp13_S_contig66168.17469.1|Name=mRNA_Ecto-sp13_S_contig66168.17469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66168:574..723+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCAGGTGTCTTTGTGGGTGCAGGAGTACGCGGGACTGTCATCCCCAGA
TGAGACGTCGCCGATGCGCTTGCTGTGGGGTAAGGAGCGGTTGGAGGAGG
AGCTTCTCGGCCTCCGCTTCACCATCTCGCCAAACTCCTTCTTCCAGGTG
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