mRNA_Ecto-sp13_S_contig6608.17455.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: A0A6H5L6U2_9PHAE (PKS III protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U2_9PHAE) HSP 1 Score: 566 bits (1460), Expect = 2.450e-200 Identity = 302/317 (95.27%), Postives = 302/317 (95.27%), Query Frame = 2
Query: 53 MALLPTWLSLQGLGPLHVLFSLFAGLCGCWLVAARRRRTKNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 1003
M LLPTWLS Q LG HVLFSL AGLCGCWLVAARRRRTKNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAG LGEELREDDAAIQAMLAESIL XXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLAT VAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV
Sbjct: 1 MVLLPTWLSWQELGRFHVLFSLLAGLCGCWLVAARRRRTKNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAGXXXXXXXLGEELREDDAAIQAMLAESILXXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATRVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 317
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: D7G1Y6_ECTSI (Polyketide Synthase III n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y6_ECTSI) HSP 1 Score: 311 bits (798), Expect = 6.100e-102 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 2
Query: 527 LRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 1003
LRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV
Sbjct: 18 LRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 176
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: D8LJ35_ECTSI (Polyketide Synthase III n=3 Tax=Phaeophyceae TaxID=2870 RepID=D8LJ35_ECTSI) HSP 1 Score: 209 bits (533), Expect = 5.000e-61 Identity = 111/280 (39.64%), Postives = 158/280 (56.43%), Query Frame = 2
Query: 164 RTKNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 1003
+ D + ++ VI G++ GNP+YR ++ +A A+ S I VL+R+Y NSRI +RYF VPD A G +FYP DGS +V D R +F E A+PL + VA+RA++E G+ D+ ++VVV+STG GPGLD EL+K++GL SV+R ++ F GC A +NG R A+ Y +PG+ AL++ VEL S+H D +NDAILHAIF DGCA AV+ G G+LA++DN +WL+
Sbjct: 33 KKSKDEQTVYPVIAGMAIGNPQYRCTQNEALAVASKCPGLES-IKPVLERIYGNSRIGSRYFAVPDFTPGRA------------------------------------AKGDPLFYPADGSYQVPVDVRLDKFKEKAVPLVSDVARRAIKEAGLNVEDISKLVVVSSTGFLGPGLDCELIKNLGLTRSVDRTLIGFMGCAAAMNGFRNANDYVTANPGKYALMICVELSSVHTTFDDNINDAILHAIFADGCAAAVLKGARKSECPKGTLAIVDNHAWLM 275
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: A0A836CMD8_9STRA (Polyketide synthase III n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD8_9STRA) HSP 1 Score: 210 bits (534), Expect = 6.160e-61 Identity = 119/308 (38.64%), Postives = 170/308 (55.19%), Query Frame = 2
Query: 113 SLFAGLCGCWL-----------VAARRRRTKNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 1003
++ A L G WL +A R + E ++ VI+G++TGNP YR +++QA A S + VL+R+Y NSRI +RYF VPD A DD +FYP DGS +V R +F ECA+PL VA+RA+ E G+ P D+ ++VVV+STG GPGLD E++K + + SV+R ++ F GC A +NG R+A+ Y HPG+ AL++ VEL S+H D +NDAILHAIF DGCA V++G TA +A G+LA++D+ + L+
Sbjct: 13 AVIAQLAGVWLPMVVASALTLVLALLVVRGRKREETMYPVIIGLATGNPPYRCTQKQALAIAQKVPGCES-VKPVLERIYGNSRIASRYFAVPDFTPDVAS-----------PDD-------------------------PLFYPADGSFQVPVSARLDKFRECAVPLVCSVARRAIMEAGLHPEDLDKLVVVSSTGFLGPGLDCEIIKRLRMKRSVDRSLIGFMGCAAAMNGFRIANDYVRCHPGKFALMLCVELSSVHTTFEDNINDAILHAIFADGCAACVLSGETASSAAKGTLAIVDDHAELM 283
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: A0A6V1RDH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDH2_HETAK) HSP 1 Score: 204 bits (518), Expect = 7.810e-59 Identity = 109/280 (38.93%), Postives = 160/280 (57.14%), Query Frame = 2
Query: 170 KNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIAR--VLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 1003
K+ + VI+G++TGNP Y+V++E+A + A P+ P R V++R+Y N+RIN+RYFC+PD A G +F+ ED R ++R +F E A+PL T V + A+ + GV D+ ++VVV+STG GPGLD EL+KS+GL+ V+R ++ F GC A +NG R+ + Y +PG+LALL VEL S H + ND+ILHAIFGDG A AV++G T A PG+LA++D+ +WL+
Sbjct: 31 KSSQSKRYPVIIGMATGNPAYKVTQEEACKIACSV--PALPKDRIPVVERIYGNTRINSRYFCIPDFTPEKA------------------------------------LPGDALFFDEDRMFRKPVEQRLDKFREKAVPLVTEVCRNAINQAGVAIDDIHKLVVVSSTGFLGPGLDCELIKSLGLSRGVDRSLIGFMGCAAAMNGFRVCNDYVKANPGKLALLCCVELSSPHTTFNNDTNDSILHAIFGDGAAAAVISGETKETAAPGALAIVDDHAWLM 272
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: A0A8J2SDG4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDG4_9STRA) HSP 1 Score: 203 bits (517), Expect = 1.310e-58 Identity = 111/275 (40.36%), Postives = 159/275 (57.82%), Query Frame = 2
Query: 182 EALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEP-GSLAVLDNRSWLV 1003
+ L I+G++TGNP YR S+EQA + A + +S I VL R+Y NSRI+ RY VPD + L DD F+ +D + R+ ++R +F E A+PL T V RAL++ GV +++G++VVV+STG GPGLD L+K++GL SV+R ++ F GC A +NG R+A+ YA +HPG+LAL+V VE+ S+H D VNDAILHAIF DGCA AV++G +A+ G ++D WL+
Sbjct: 42 QKLIPTIMGMATGNPPYRASQEQALQVAESCPECTS-IKPVLARIYGNSRIDYRYMAVPDFTPE----------QRLEGDD--------------------------NFFDDDLNFRMPVEKRLDKFREVAVPLVTDVCARALKDAGVQASEIGKLVVVSSTGFLGPGLDCSLIKTLGLERSVDRSLIGFMGCAAAMNGFRVANDYAASHPGKLALMVCVEISSVHTTFDDNVNDAILHAIFADGCAAAVISGEKPGSAKAKGKFGIVDTHGWLM 279
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: A0A7S3NPW3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPW3_9STRA) HSP 1 Score: 201 bits (512), Expect = 6.370e-58 Identity = 113/280 (40.36%), Postives = 161/280 (57.50%), Query Frame = 2
Query: 167 TKNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAG-RTARNAEPGSLAVLDNRSWLV 1003
TK+ + ++ VILG++TGNP YRVS+++A A D S I VL R+Y NSRI+ RY VPD QA+ G E+F+P+D S ++ ++R F E A+PL T V K AL + + P +G++VVV+STG GPGLD EL+K++GL+ SV+R ++ F GC A +NG R+A+ YAV +PG+LAL+ VE+ S+H D VNDAILHAIF DGCA AV++G + G ++D + L+
Sbjct: 32 TKSGQDKVYPVILGMATGNPPYRVSQQEALAIAESCPDCGS-IKPVLARIYGNSRIDYRYMAVPDFTPE--------------------QAI----------------KGDEIFFPKDKSFKMPVEKRLDMFREKAIPLVTRVCKAALEDAKIAPELIGKLVVVSSTGFLGPGLDCELIKTLGLSRSVDRSLIGFMGCAAAMNGFRVANDYAVANPGKLALMCCVEISSVHTTFDDNVNDAILHAIFADGCAAAVISGEKPGAPRAKGKFGIIDTHACLM 274
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: A0A6T7DYK4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7DYK4_9STRA) HSP 1 Score: 197 bits (500), Expect = 2.380e-56 Identity = 108/288 (37.50%), Postives = 163/288 (56.60%), Query Frame = 2
Query: 152 ARRRRTKNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYP--EDGS--LRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 1003
A + + + E + +ILG +TGNPEY+V + +A + A + S VLDR+Y NS+I +RY CVPD + + L+ DD +FYP +DGS ++ + R +F E A+PL + V K+A+ + G+ D+G++VVV+STG GPGLD +++ IGL+ V+R ++ F GC A +NG R+ Y +H + AL+ VEL S+H D +ND+ILHAIFGDGCA AV+ GRTA A G+ A++D+ +WL+
Sbjct: 5 AMQPKKASGSETKYPIILGFATGNPEYKVMQTEALKVAKTSPGGSQIAPGVLDRIYGNSKITSRYLCVPDFSPS------------LKRDD------------------------DPLFYPPTDDGSDWYKIPVNVRLDKFREKAVPLVSAVCKKAVDDAGISMEDIGKLVVVSSTGFLGPGLDCAIIEEIGLSRGVDRALIGFMGCAAAMNGFRVGMDYVRSHE-KAALVCCVELSSVHTTFDDNINDSILHAIFGDGCAAAVLGGRTATEAPKGAFAIIDDHAWLM 255
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: A0A7S4D871_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D871_HETAK) HSP 1 Score: 187 bits (476), Expect = 2.560e-54 Identity = 104/268 (38.81%), Postives = 149/268 (55.60%), Query Frame = 2
Query: 170 KNDGEALFAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIAR--VLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPG 967
K+ + VI+G++TGNP Y+V++E+A + A P+ P R V++R+Y N+RIN+RYFC+PD A G +F+ ED R ++R +F E A+PL T V + A+ + GV D+ ++VVV+STG GPGLD EL+KS+GL+ V+R ++ F GC A +NG R+ + Y +PG+LALL VEL S H + ND+ILHAIFGDG A AV++G T AE G
Sbjct: 31 KSSQSKRYPVIIGMATGNPAYKVTQEEACKIACSV--PALPKDRIPVVERIYGNTRINSRYFCIPDFTPEKA------------------------------------LPGDALFFDEDRMFRKPVEQRLDKFREKAVPLVTEVCRNAINQAGVAIDDIHKLVVVSSTGFLGPGLDCELIKSLGLSRGVDRSLIGFMGCAAAMNGFRVCNDYVKANPGKLALLCCVELSSPHTTFNNDTNDSILHAIFGDGAAAAVISGETKETAEIG 260
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Match: A0A7S2V1U6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1U6_9STRA) HSP 1 Score: 192 bits (487), Expect = 8.220e-54 Identity = 105/281 (37.37%), Postives = 157/281 (55.87%), Query Frame = 2
Query: 164 RTKNDGEAL-FAVILGISTGNPEYRVSKEQAFRHAAGATDPSSPIARVLDRVYNNSRINNRYFCVPDLAAAGADGGGSGLGEELREDDAAIQAMLAESILAXXXXXXXXXXGAEMFYPEDGSLRVNTDRRFQRFAECALPLATGVAKRALREVGVGPADVGRIVVVTSTGVCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 1003
++ + GE + VI+G++TGNP Y+ ++++A A + VL R+Y NSRI R+F VPD D A+ G EMF+P D S +V + R +F E A+PL T +A+ A+ V +D+ ++VVV+STG GPGLD EL+ +GL SV+R ++ F GC A +NG R+A+ Y + G+ ALLV VE+ S+H D +ND+ILHAIF DGCA AV++G T + G+LA++D+ +WL+
Sbjct: 71 KSSSSGEKKRYPVIIGMATGNPPYKCTQQEALA-VAQKVPGIEKVQAVLPRIYGNSRIGTRHFAVPDFTP-----------------DRALP-------------------GDEMFFPADHSFKVPVETRLAKFKEVAVPLVTRIAREAIENANVAISDIHKLVVVSSTGFLGPGLDCELINQLGLARSVDRSLIGFMGCAAAMNGFRIANDYCKANAGKYALLVCVEISSVHTTFDDDINDSILHAIFADGCAAAVLSGETKDSIPKGTLAIVDDHAWLM 314 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6608.17455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6608.17455.1 >prot_Ecto-sp13_S_contig6608.17455.1 ID=prot_Ecto-sp13_S_contig6608.17455.1|Name=mRNA_Ecto-sp13_S_contig6608.17455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp MALLPTWLSLQGLGPLHVLFSLFAGLCGCWLVAARRRRTKNDGEALFAVIback to top mRNA from alignment at Ecto-sp13_S_contig6608:333..4886- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6608.17455.1 ID=mRNA_Ecto-sp13_S_contig6608.17455.1|Name=mRNA_Ecto-sp13_S_contig6608.17455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6608:333..4886- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6608:333..4886- >mRNA_Ecto-sp13_S_contig6608.17455.1 ID=mRNA_Ecto-sp13_S_contig6608.17455.1|Name=mRNA_Ecto-sp13_S_contig6608.17455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6608:333..4886- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |