mRNA_Ecto-sp13_S_contig66046.17450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66046.17450.1
Unique NamemRNA_Ecto-sp13_S_contig66046.17450.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66046.17450.1 vs. uniprot
Match: D7FML0_ECTSI (Putative Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FML0_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 7.410e-8
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 3 
Query:    3 GRAPLSDPNAFPNLEILPDVDYCLRR 80
            GRAPLSDPNA PNLEILPDVDYCLRR
Sbjct:  386 GRAPLSDPNATPNLEILPDVDYCLRR 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66046.17450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FML0_ECTSI7.410e-896.15Putative Glutathione S-transferase n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66046contigEcto-sp13_S_contig66046:37..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463909.9891107-CDS-Ecto-sp13_S_contig66046:36..1161681463909.9891107-CDS-Ecto-sp13_S_contig66046:36..116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66046 37..116 +
1681463910.0030794-CDS-Ecto-sp13_S_contig66046:312..3401681463910.0030794-CDS-Ecto-sp13_S_contig66046:312..340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66046 313..340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463910.0157583-UTR-Ecto-sp13_S_contig66046:340..3911681463910.0157583-UTR-Ecto-sp13_S_contig66046:340..391Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66046 341..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66046.17450.1prot_Ecto-sp13_S_contig66046.17450.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66046 37..340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66046.17450.1

>prot_Ecto-sp13_S_contig66046.17450.1 ID=prot_Ecto-sp13_S_contig66046.17450.1|Name=mRNA_Ecto-sp13_S_contig66046.17450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
LVEHHFRTQTPSLTLKFCRTWTTVYVGLCSTEGVS*
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mRNA from alignment at Ecto-sp13_S_contig66046:37..391+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66046.17450.1 ID=mRNA_Ecto-sp13_S_contig66046.17450.1|Name=mRNA_Ecto-sp13_S_contig66046.17450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=355bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66046:37..391+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGTCGAGCACCACTTTCGGACCCAAACGCCTTCCCTAACCTTGAAATT
TTGCCGGACGTGGACTACTGTTTACGTCGGGTAAGATCGGTGCTGGATAT
CTGTTTTGTCAAATGTCAGCGATTAAGTCCGCAATTTTTTTTTTTCCCGC
CTGTTTGCAAGTCTTCCGTGGGTTGGCCTCGTGCTGGCGTTCGCGGATCG
CGCTCTGAATCAAGAAAGTTCCGAGTATCACGTGTTCAGATTGTGTTTTC
CTTATCCAATTTGATGTCGTAGGTAGCCTCTGCTCTACTGAAGGGGTCTC
TTGACGAAGACGAAGCTGCCCTCAAGCGCGGAGCGACTAGCAGCGGAGGC
CACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66046:37..391+

>mRNA_Ecto-sp13_S_contig66046.17450.1 ID=mRNA_Ecto-sp13_S_contig66046.17450.1|Name=mRNA_Ecto-sp13_S_contig66046.17450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66046:37..391+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGTCGAGCACCACTTTCGGACCCAAACGCCTTCCCTAACCTTGAAATT
TTGCCGGACGTGGACTACTGTTTACGTCGGCCTCTGCTCTACTGAAGGGG
TCTCTTGA
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