mRNA_Ecto-sp13_S_contig6587.17423.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: D8LAV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV9_ECTSI) HSP 1 Score: 513 bits (1321), Expect = 9.710e-181 Identity = 251/277 (90.61%), Postives = 257/277 (92.78%), Query Frame = 2
Query: 56 MFLRDPGDKELRLFPLLPEQPPQAGLSTTDATADAAPTTTDASSAGSITSELTSPRGNVLVDVGFWADPRDGGDKRPNPAQLVDEEWGGTVEAIAVALYVRSGFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSLRNLRALREAQAGGRLHWEVDERGRGQMARLSPGTAVFLKDSTTLGIALPPEPEVRKTPSGGGREEEQWCSCVPPR 886
MFLRDP DKE RLFP+ PEQPPQAGLSTTDATADAAP AGSITSELTSP GNVLVDVGFWADPRD GDKRP+PAQLVDEEWGGTVEA+AVALYVRSGFLESFELGYSFCRFGCCGD AAQT ARDSKRRSWFSAIGGNGGRCG GAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV FSLRNLRALREAQAGGRLHWEVDERGRG+MARLSPGTAVFLKD+TTLGIALPPEPEVRKTPSGG REEEQ CSC+ PR
Sbjct: 1 MFLRDPWDKEFRLFPVPPEQPPQAGLSTTDATADAAPXXXXXXXAGSITSELTSPHGNVLVDVGFWADPRDSGDKRPDPAQLVDEEWGGTVEAVAVALYVRSGFLESFELGYSFCRFGCCGDGSAAQTSARDSKRRSWFSAIGGNGGRCGGGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVTFSLRNLRALREAQAGGRLHWEVDERGRGRMARLSPGTAVFLKDNTTLGIALPPEPEVRKTPSGGSREEEQRCSCMLPR 277
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: W4GN93_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GN93_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.340e-16 Identity = 64/197 (32.49%), Postives = 88/197 (44.67%), Query Frame = 2
Query: 233 LVDVGFWADPRD-GGDKRPNPAQLVDEEWGGTVEAIA--VALYVR-SGFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSLRNLRA-LREAQAGGRLHWEVDERGRGQMARLSPGTAVFLKDSTTLGIALP 808
+ ++GFW D GD RP+P L D+ W +A V YVR +GF+ES+E+GYSFCR DS C S K +G T+TDG Y WPEG HY+E+H V PP DFV L+++ A + + W+ + RG + P + +TTL I P
Sbjct: 1 MHEIGFWRKYNDDAGDVRPHPQSLQDKAWYDRRADMAAKVIWYVRHAGFVESYEMGYSFCRI--------------DSS--------------CSS------------KALGACTMTDGMYCWPEGYVHYLEQHHVVPPADFVEHVLQHVAAAVARPPTPFLVMWDYESRG---PVPMPPTMQHMILANTTLTIGQP 154
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: A0A1V9Y7G1_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7G1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.330e-16 Identity = 49/142 (34.51%), Postives = 65/142 (45.77%), Query Frame = 2
Query: 233 LVDVGFWADPRDGGDKRPNPAQLVDEEW--GGTVEAIAVALYVR-SGFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV 649
L++VGFW +D D RP+P + D+ W +A V Y++ G +ES+E+GYSFCR G C K MG TLTDG Y WPEGL HY++ H VRPP +F+
Sbjct: 3 LLEVGFWQ--KDEHDDRPHPREFQDKAWFIAHDNQAARVIEYLQWGGCVESYEMGYSFCRLGDCS-----------------------------------------GKEMGACTLTDGVYCWPEGLVHYVKHHDVRPPQEFI 101
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: A0A067CDZ9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDZ9_SAPPC) HSP 1 Score: 84.7 bits (208), Expect = 7.530e-16 Identity = 57/161 (35.40%), Postives = 72/161 (44.72%), Query Frame = 2
Query: 230 VLVDVGFW----ADPRDGGDKRPNPAQLVDEEWGGTVEAIAVAL--YVRS-GFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSLRNLRALREAQ 691
+LVDVGFW ADP DG RP+P L D W +A + Y+R+ G +ES+E+GYSFCR G P K MG T+TDG Y WPEG AHY++ H VRPP + V L R R ++
Sbjct: 1 MLVDVGFWCKDEADPLDG---RPHPRTLQDAAWFSENVGLAAIVVDYLRTQGCVESYEMGYSFCRLG--------------------------------DACPP--------KSMGACTMTDGVYCWPEGYAHYLDIHCVRPPQELVDHILAQPRMPRPSR 118
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: A0A485KNH7_9STRA (Aste57867_9691 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNH7_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.300e-15 Identity = 63/179 (35.20%), Postives = 78/179 (43.58%), Query Frame = 2
Query: 233 LVDVGFW----ADPRDGGDKRPNPAQLVDEEW----GGTVEAIAVALYVR-SGFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSLRNLRALREAQAGGRLHWEVDERGRGQM 742
+ +VGFW ADP D RP+P L D+ W GT + YVR +G +ES+E+GYSFCR P SK MG TLTDG Y WPEG AHY+E+H VRPP+ F+A L A G L W+ E+ QM
Sbjct: 1 MEEVGFWRKSDADPAD---LRPHPQALQDKTWYMENKGTARQLIA--YVRYAGCVESYEMGYSFCRID--------------------------------PSCP--------SKVMGACTLTDGVYCWPEGYAHYLEQHHVRPPEVFLAHVLSRP-VPSTAPKSGLLMWDFTEKQPVQM 133
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: T0Q7W4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q7W4_SAPDV) HSP 1 Score: 81.3 bits (199), Expect = 1.320e-14 Identity = 53/154 (34.42%), Postives = 68/154 (44.16%), Query Frame = 2
Query: 230 VLVDVGFWA-DPRDGGDKRPNPAQLVDEEWGGTVEAIAVAL--YVRS-GFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSLRNLRAL 679
L++VGFW D D D RP+P L + W +A ++ Y+R+ G +ES+E+GYSFCR G P K MG T+TDG Y WPEG AHY++ H VRPP D V L R L
Sbjct: 3 ALLEVGFWCKDEADLLDGRPHPRTLQEPVWFAANADLAASVVDYLRTQGCVESYEMGYSFCRLG--------------------------------DACPP--------KSMGACTMTDGVYCWPEGYAHYLDVHCVRPPQDLVDHILAQPRTL 116
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: A0A1V9YWU9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWU9_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.450e-14 Identity = 52/144 (36.11%), Postives = 68/144 (47.22%), Query Frame = 2
Query: 230 VLVDVGFWADPR-DGGDKRPNPAQLVDEEWGGTVEAIA--VALYVRS-GFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV 649
L++VGFW D D+RP+P L D W A+A V Y+R+ G +ES+E+GYSFCR G C AP++ MG T+TDG Y WPEG AHY++ H VRPP + V
Sbjct: 3 TLLEVGFWRQTEGDRLDQRPHPRALQDPSWFAEHPALATRVISYLRTRGCVESYEMGYSFCRLGL----------------------------DC---APKE---------MGACTMTDGVYCWPEGYAHYLQAHHVRPPQELV 106
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: UPI001F0F7041 (hypothetical protein n=1 Tax=Paludisphaera soli TaxID=2712865 RepID=UPI001F0F7041) HSP 1 Score: 82.0 bits (201), Expect = 1.930e-14 Identity = 53/140 (37.86%), Postives = 68/140 (48.57%), Query Frame = 2
Query: 230 VLVDVGFWADPRDGGDKRPNPAQLVDEEWGGTVEAIAVALYVRSGFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFV 649
VL VG+W R + P+PA LV W VA Y++SG G S+CRFGC DG + + +W A+ R G A MG L DG++VWPEGLAHY+E HAVR P++FV
Sbjct: 26 VLRAVGYWRSHRADAPRLPDPASLVQPCWHSESLDEIVA-YLKSGRRFIAWFGESYCRFGCW--DGVLELDDGPDEEAAWKEAL----DRYGEPAD-----------MGSCDLYDGEWVWPEGLAHYVERHAVRLPEEFV 147
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: A0A1H3H1R2_9BACT (Uncharacterized protein n=1 Tax=Hymenobacter psychrophilus TaxID=651662 RepID=A0A1H3H1R2_9BACT) HSP 1 Score: 78.6 bits (192), Expect = 2.100e-13 Identity = 55/166 (33.13%), Postives = 71/166 (42.77%), Query Frame = 2
Query: 227 NVLVDVGFWADPRDGGDKRPNPAQLVDEEWGGTVEAIAVALYVRSGFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSL-RNLRALREAQAGGRLHWEVD 721
+ LV GFW + P+PAQ VD++W + E + V Y+R G + +GYS+CRFGC D MG LTDG Y WPEGLAHY+E H VR P + V+ L ++L A Q L W VD
Sbjct: 4 DALVGFGFWRSVFE--PLLPDPAQFVDDKWD-SAERLQVINYLRQGRQLTHWMGYSWCRFGCKAAD------------------------------------------MGAADLTDGSYCWPEGLAHYLENHQVRLPHEIVSHILAQHLFASVPTQQAETL-WPVD 123
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Match: UPI001BE8BAF1 (hypothetical protein n=2 Tax=Arthrobacter sp. ISL-48 TaxID=2819110 RepID=UPI001BE8BAF1) HSP 1 Score: 72.0 bits (175), Expect = 1.120e-11 Identity = 48/152 (31.58%), Postives = 64/152 (42.11%), Query Frame = 2
Query: 233 LVDVGFWADPRDGGDKRPNPAQLVDEEWGGTVEAIAVALYVRSGFLESFELGYSFCRFGCCGDDGAAQTVARDSKRRSWFSAIGGNGGRCGSGAPEQRRGPKGSKFMGCTTLTDGKYVWPEGLAHYIEEHAVRPPDDFVAFSLRNLRALREA 688
L+ +G+W P+ G P+P Q VD W T E VA Y++ G + +G+S CRF CG K G L+DG +VWP+GLAHY+ EHAVR PD FV + + L A
Sbjct: 7 LILIGYWDGPQTGR-SWPSPEQFVDASWD-TEERDFVAYYLQMGLITRSYMGFSRCRF-------------------------------CG-------------KENGNLELSDGHFVWPDGLAHYVVEHAVRLPDRFVRHAFAKIDGLESA 112 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6587.17423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6587.17423.1 >prot_Ecto-sp13_S_contig6587.17423.1 ID=prot_Ecto-sp13_S_contig6587.17423.1|Name=mRNA_Ecto-sp13_S_contig6587.17423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=278bp MFLRDPGDKELRLFPLLPEQPPQAGLSTTDATADAAPTTTDASSAGSITSback to top mRNA from alignment at Ecto-sp13_S_contig6587:6564..7957+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6587.17423.1 ID=mRNA_Ecto-sp13_S_contig6587.17423.1|Name=mRNA_Ecto-sp13_S_contig6587.17423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6587:6564..7957+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6587:6564..7957+ >mRNA_Ecto-sp13_S_contig6587.17423.1 ID=mRNA_Ecto-sp13_S_contig6587.17423.1|Name=mRNA_Ecto-sp13_S_contig6587.17423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6587:6564..7957+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |