mRNA_Ecto-sp13_S_contig6585.17419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6585.17419.1
Unique NamemRNA_Ecto-sp13_S_contig6585.17419.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.440e-60
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1
Query:    1 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQR 348
            AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQ+
Sbjct:  179 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQK 294          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: A0A6H5L6H2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H2_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 5.160e-58
Identity = 115/132 (87.12%), Postives = 116/132 (87.88%), Query Frame = 1
Query:    1 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKV----------------ESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQR 348
            AIAAKAELRRRID+EEKNSKMNRLKIQNQWRKIMRLAKV                ESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQR
Sbjct:  167 AIAAKAELRRRIDKEEKNSKMNRLKIQNQWRKIMRLAKVTKKRPGGLVLTAQDRVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQR 298          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: A0A7S4D6K3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6K3_HETAK)

HSP 1 Score: 172 bits (435), Expect = 1.800e-51
Identity = 94/115 (81.74%), Postives = 108/115 (93.91%), Query Frame = 1
Query:    1 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQ 345
            A+  + EL+ R++QE+KNSK N+LKIQNQWRKIMRLAKVESL+KDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHL+N+D+LIDLQD+RLLALEQEFE EL+ L+
Sbjct:  117 ALLKQQELKSRMEQEQKNSKTNQLKIQNQWRKIMRLAKVESLKKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLRNLDRLIDLQDARLLALEQEFEGELRELE 231          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: F0Y381_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y381_AURAN)

HSP 1 Score: 172 bits (435), Expect = 2.860e-49
Identity = 96/113 (84.96%), Postives = 105/113 (92.92%), Query Frame = 1
Query:    7 AAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQ 345
            AA+ EL++R++QE+ NS+MNRLKIQNQWRKIMRLAKVESLRK IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR+HLQNMDQLIDLQDSRLL  EQEFE EL TL+
Sbjct:   15 AARNELKQRMEQEKANSRMNRLKIQNQWRKIMRLAKVESLRKGIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMALRSHLQNMDQLIDLQDSRLLTSEQEFEQELHTLE 127          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: A0A7S2BVH9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVH9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 4.740e-48
Identity = 93/114 (81.58%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    4 IAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQ 345
            +AA+ EL+ R++QE  NS++NRLKIQNQWRKIMRLAKVE+LRK+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ +LRAHL+NMD+LIDLQD+RLLALEQEFE EL TL+
Sbjct:   81 LAARNELKNRMEQERANSRVNRLKIQNQWRKIMRLAKVENLRKEIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMSLRAHLENMDRLIDLQDTRLLALEQEFEKELYTLE 194          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: A0A835ZEY8_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY8_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.850e-46
Identity = 91/115 (79.13%), Postives = 105/115 (91.30%), Query Frame = 1
Query:    1 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQ 345
            A AA+ EL+RR++ EE+NS+ NRLKIQNQWRKIMRLAKVESLR+DIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQ+QTALRAHL  MD LIDLQD+RLL+LE+ FE EL +++
Sbjct:  107 AQAARMELQRRMEAEERNSRTNRLKIQNQWRKIMRLAKVESLRRDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQYQTALRAHLHGMDGLIDLQDARLLSLERHFEAELVSME 221          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: A0A3L6VNT2_9STRA (NYD-SP28 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VNT2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.990e-44
Identity = 84/116 (72.41%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    1 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQR 348
            A+  KA+L+  +++E+K SKMN+LKIQN WRKIMRL KVE+LRKD+EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL N+D LIDLQD RLL LE EFE +L  L+R
Sbjct:   66 AVTKKAQLKEFMEKEQKISKMNKLKIQNHWRKIMRLVKVEALRKDVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDHLIDLQDGRLLGLEDEFEKDLHALER 181          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: A0A7S2RYX4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RYX4_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.100e-43
Identity = 86/111 (77.48%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVEL 333
            A+ A+ +L   + +E KN+++N+L+IQNQWRK+MRLAKVESLRKDIE+LSQNHERDVDRKDAIIQMLDRDLEEAEDQ+QTALR+HLQN+D+LIDLQDSRLLALE EFE EL
Sbjct:   46 ALNARNQLIADMKEELKNTQVNKLRIQNQWRKVMRLAKVESLRKDIEVLSQNHERDVDRKDAIIQMLDRDLEEAEDQYQTALRSHLQNIDRLIDLQDSRLLALENEFESEL 156          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: A0A7S1CIL1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIL1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 7.570e-43
Identity = 86/114 (75.44%), Postives = 100/114 (87.72%), Query Frame = 1
Query:    1 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTL 342
            A A + EL+ R++ E+K +  NRLKIQN WRKIMRLAKVESLRKDIEI+SQ HERDVDRKDAIIQMLDRDLEEAE+Q+Q ALR+HLQN+D+LIDLQDSRLLALE EFE +L+ L
Sbjct:   44 AAAKRKELQERLELEQKYTAWNRLKIQNTWRKIMRLAKVESLRKDIEIISQTHERDVDRKDAIIQMLDRDLEEAEEQYQVALRSHLQNIDRLIDLQDSRLLALENEFEADLRVL 157          
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Match: A0A6G0WS68_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WS68_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.290e-42
Identity = 85/116 (73.28%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    1 AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQR 348
            A+  KA+L+  +D+E+K SKMN+LKIQN WRKIMRL KVE+LRK++EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL N+DQLIDLQD RLL LE+EFE +L  L+R
Sbjct:   65 AVTKKAQLKEFMDKEQKISKMNKLKIQNHWRKIMRLVKVEALRKEVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDQLIDLQDGRLLGLEEEFEKDLHALER 180          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6585.17419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVY5_ECTSI1.440e-6099.14Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L6H2_9PHAE5.160e-5887.12Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A7S4D6K3_HETAK1.800e-5181.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0Y381_AURAN2.860e-4984.96Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2BVH9_9STRA4.740e-4881.58Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZEY8_9STRA7.850e-4679.13Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A3L6VNT2_9STRA2.990e-4472.41NYD-SP28 domain-containing protein n=2 Tax=Aphanom... [more]
A0A7S2RYX4_9STRA3.100e-4377.48Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1CIL1_9STRA7.570e-4375.44Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6G0WS68_9STRA1.290e-4273.28Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6585contigEcto-sp13_S_contig6585:6410..7724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score206.5
Seed ortholog evalue6.9e-51
Seed eggNOG ortholog2880.D7FVY5
Preferred nameCCDC65
Model size348
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
EggNOG free text desc.regulation of cilium movement
EggNOG OGs2CMHW@1,2QQDD@2759
Cds size348
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.1413925-CDS-Ecto-sp13_S_contig6585:6409..65231681463907.1413925-CDS-Ecto-sp13_S_contig6585:6409..6523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6585 6410..6523 +
1681463907.1538012-CDS-Ecto-sp13_S_contig6585:7131..72361681463907.1538012-CDS-Ecto-sp13_S_contig6585:7131..7236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6585 7132..7236 +
1681463907.1666105-CDS-Ecto-sp13_S_contig6585:7595..77241681463907.1666105-CDS-Ecto-sp13_S_contig6585:7595..7724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6585 7596..7724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6585.17419.1prot_Ecto-sp13_S_contig6585.17419.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6585 6410..7724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6585.17419.1

>prot_Ecto-sp13_S_contig6585.17419.1 ID=prot_Ecto-sp13_S_contig6585.17419.1|Name=mRNA_Ecto-sp13_S_contig6585.17419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
AIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILS
QNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRL
LALEQEFEVELKTLQR
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mRNA from alignment at Ecto-sp13_S_contig6585:6410..7724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6585.17419.1 ID=mRNA_Ecto-sp13_S_contig6585.17419.1|Name=mRNA_Ecto-sp13_S_contig6585.17419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6585:6410..7724+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATCGCTGCGAAGGCAGAACTGCGACGCCGTATCGACCAGGAGGAAAA GAACAGCAAAATGAACCGGCTCAAGATCCAGAACCAGTGGAGAAAGATCA TGCGCCTGGCGAAGGTGACCAAGAAGAGACCAGGGGGGGCTAGTGCTGAC GGCCCAAGACCGGGTGCAGGGGGGGCAATGGGGGGGCTTGAAAAAATTCA GGGTCGACATGGCTGCCTAAACCCCGCCAACAAGGCGATTCGAAATGTTA GGGCACCGCTCAATGGATGTTTTACCTTCTTGAAGTCATTCCATTGATTG TCAACCAAGTCAAGCCGCGCGAATATTCGGGGAGCAAACCGCGTAATATC CGTAGTCCGGGGTTCATTGTTACGACGAACAGGGGGCAGCAGAACTTCTC TCGACCGACGGAATCGTCTCGCTGCGCTAAGAAATGAGCGCAGAAGACTA CCCAGGAACACGCCGAAAGAGAACCGTCCCAATTTTGGGCTGCAAGGTTC AGAACCACATTGAACCCAAAACCTCCACCACGCTGATCGCCTACCGTTGG AAGAGTTGTCCAGGTTCATCCGCACGTATTTGGATAGTATCCTTAGCGGT GTCGGAATCCTGCTGTTCGACGCCTCCTGGGTCTAAAATCCAAGCAGAAA GGAGCTACTCGGCGATGGCGGCGTCCTTGAAGCATGACACTCGAGAGAAA ATCCTCTTGCTTCGTGTGTCAGGTGGAAAGTCTTCGCAAGGACATCGAGA TCCTCTCGCAGAACCACGAGCGAGACGTGGACCGAAAAGATGCCATCATT CAGATGCTTGATCGAGACCTCGAGGAGGTGAGTGAATTCCGTATGCGTAG GATGTGTCATATCCATGAGGTTAAGCCGGAAGCTTTGGTTCATCTTGTTC TGTTTCCGAGATGGCATCGGTGGATGACTTGCGTTGCGACGGGATGTTCG GCTCATTTGCCACGAGCGCACAACAGGGAAAAACAAGTGACGGAGAAGCA AGACGACCCAAGTAGTACAGAGAAAAGGGGAGGGACAGAAACAGAGACAA AGAGAAGCGGGGCCGTGCTGAACAAAGGCTGGACACGTGTGTAACGCTAT TGCCCCTGGGTTGTCCTCTCCCCGCGCCTCTCTCCCCGATCTCGGCTTGT TTGCCCAACCTCCTTACCCGATCCGACCCAAAACAGGCCGAGGATCAGTT TCAGACGGCTCTTCGGGCGCACCTCCAGAACATGGATCAGCTTATTGATT TGCAAGACTCCAGGCTGCTAGCGCTCGAGCAGGAATTTGAGGTGGAGCTC AAGACGCTACAAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6585:6410..7724+

>mRNA_Ecto-sp13_S_contig6585.17419.1 ID=mRNA_Ecto-sp13_S_contig6585.17419.1|Name=mRNA_Ecto-sp13_S_contig6585.17419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6585:6410..7724+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATCGCTGCGAAGGCAGAACTGCGACGCCGTATCGACCAGGAGGAAAA
GAACAGCAAAATGAACCGGCTCAAGATCCAGAACCAGTGGAGAAAGATCA
TGCGCCTGGCGAAGGTGGAAAGTCTTCGCAAGGACATCGAGATCCTCTCG
CAGAACCACGAGCGAGACGTGGACCGAAAAGATGCCATCATTCAGATGCT
TGATCGAGACCTCGAGGAGGCCGAGGATCAGTTTCAGACGGCTCTTCGGG
CGCACCTCCAGAACATGGATCAGCTTATTGATTTGCAAGACTCCAGGCTG
CTAGCGCTCGAGCAGGAATTTGAGGTGGAGCTCAAGACGCTACAAAGG
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