mRNA_Ecto-sp13_S_contig65828.17415.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65828.17415.1
Unique NamemRNA_Ecto-sp13_S_contig65828.17415.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: D7FXG1_ECTSI (ATP synthase subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG1_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 3.000e-40
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGC DTGAPIMVPVGQETLGRIMNVIGEPVDERGPI+SK
Sbjct:   63 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCTDTGAPIMVPVGQETLGRIMNVIGEPVDERGPINSK 138
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A836CJ45_9STRA (ATP synthase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ45_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.220e-35
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            V+VA G  RLVLEVAQHLGENTVRTIAMEATEGLTRGQ C+DTG+PIMVPVG ETLGRIMNVIGEPVDERGPI+SK
Sbjct:   62 VDVAKGEPRLVLEVAQHLGENTVRTIAMEATEGLTRGQKCLDTGSPIMVPVGAETLGRIMNVIGEPVDERGPIESK 137
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A0H5RHB2_9EUKA (ATP-synt_ab_N domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RHB2_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 5.400e-33
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:   25 RLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            R+VLEVAQHLGENTVRTIAME T+GL RGQ C+DTG PIMVPVG ETLGRIMNVIGEPVDERGPI++K
Sbjct:   25 RIVLEVAQHLGENTVRTIAMEGTDGLVRGQECVDTGNPIMVPVGPETLGRIMNVIGEPVDERGPINAK 92
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A3Q2Z6M8_HIPCM (ATP-synt_ab_N domain-containing protein n=2 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2Z6M8_HIPCM)

HSP 1 Score: 118 bits (295), Expect = 1.550e-32
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            + VA   SRLVLEVAQHLGENTVRTIAM+ TEGL RGQ  +DTGAPI +PVG ETLGRIMNVIGEP+DERGPI +K
Sbjct:   36 LEVAGRESRLVLEVAQHLGENTVRTIAMDGTEGLIRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPISTK 111
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A3Q2XQ03_HIPCM (ATP-synt_ab_N domain-containing protein n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XQ03_HIPCM)

HSP 1 Score: 118 bits (295), Expect = 3.350e-32
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            + VA   SRLVLEVAQHLGENTVRTIAM+ TEGL RGQ  +DTGAPI +PVG ETLGRIMNVIGEP+DERGPI +K
Sbjct:   36 LEVAGRESRLVLEVAQHLGENTVRTIAMDGTEGLIRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPISTK 111
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A671UU56_SPAAU (ATP synthase subunit beta, mitochondrial n=5 Tax=Clupeocephala TaxID=186625 RepID=A0A671UU56_SPAAU)

HSP 1 Score: 118 bits (296), Expect = 5.110e-32
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            + VA   SRLVLEVAQHLGENTVRTIAM+ TEGL RGQ  +DTGAPI +PVG ETLGRIMNVIGEP+DERGPI +K
Sbjct:   75 LEVAGRESRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPISTK 150
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A8C5BY90_GADMO (ATP synthase subunit beta, mitochondrial-like n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BY90_GADMO)

HSP 1 Score: 118 bits (296), Expect = 5.110e-32
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            + VA   SRLVLEVAQHLGENTVRTIAM+ TEGL RGQ  +DTGAPI +PVG ETLGRIMNVIGEP+DERGPI +K
Sbjct:   75 LEVAGRESRLVLEVAQHLGENTVRTIAMDGTEGLVRGQRVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPISTK 150
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A4W6FLR8_LATCA (ATP synthase F1 subunit beta n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6FLR8_LATCA)

HSP 1 Score: 118 bits (296), Expect = 6.000e-32
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            + VA   SRLVLEVAQHLGENTVRTIAM+ TEGL RGQ  +DTGAPI +PVG ETLGRIMNVIGEP+DERGPI +K
Sbjct:   67 LEVAGRESRLVLEVAQHLGENTVRTIAMDGTEGLVRGQQVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPISTK 142
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BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A669B7E8_ORENI (ATP synthase F1 subunit beta n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=A0A669B7E8_ORENI)

HSP 1 Score: 118 bits (296), Expect = 7.400e-32
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            + VA   SRLVLEVAQHLGENTVRTIAM+ TEGL RGQ  +DTGAPI +PVG ETLGRIMNVIGEP+DERGPI +K
Sbjct:   75 LEVAGRESRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPISTK 150
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Match: A0A7N5ZS80_ANATE (ATP synthase subunit beta, mitochondrial-like n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N5ZS80_ANATE)

HSP 1 Score: 117 bits (294), Expect = 1.030e-31
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVPVGQETLGRIMNVIGEPVDERGPIDSK 228
            + VA   SRLVLEVAQHLGENTVRTIAM+ TEGL RGQ  +DTGAPI +PVG ETLGRIMNVIGEP+DERGPI +K
Sbjct:   76 LEVAGRDSRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPITTK 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65828.17415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG1_ECTSI3.000e-4097.37ATP synthase subunit beta n=2 Tax=Ectocarpus TaxID... [more]
A0A836CJ45_9STRA3.220e-3588.16ATP synthase subunit beta n=1 Tax=Tribonema minus ... [more]
A0A0H5RHB2_9EUKA5.400e-3385.29ATP-synt_ab_N domain-containing protein (Fragment)... [more]
A0A3Q2Z6M8_HIPCM1.550e-3277.63ATP-synt_ab_N domain-containing protein n=2 Tax=Hi... [more]
A0A3Q2XQ03_HIPCM3.350e-3277.63ATP-synt_ab_N domain-containing protein n=1 Tax=Hi... [more]
A0A671UU56_SPAAU5.110e-3277.63ATP synthase subunit beta, mitochondrial n=5 Tax=C... [more]
A0A8C5BY90_GADMO5.110e-3277.63ATP synthase subunit beta, mitochondrial-like n=1 ... [more]
A0A4W6FLR8_LATCA6.000e-3277.63ATP synthase F1 subunit beta n=1 Tax=Lates calcari... [more]
A0A669B7E8_ORENI7.400e-3277.63ATP synthase F1 subunit beta n=1 Tax=Oreochromis n... [more]
A0A7N5ZS80_ANATE1.030e-3177.63ATP synthase subunit beta, mitochondrial-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65828contigEcto-sp13_S_contig65828:7..730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score148.3
Seed ortholog evalue1.5e-33
Seed eggNOG ortholog2880.D7FXG1
Preferred nameatpB
Model size228
KEGG koko:K02133
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categoryother localisation
GOsGO:0000275,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005754,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0010035,GO:0010038,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045259,GO:0045261,GO:0045267,GO:0046034,GO:0046390,GO:0046483,GO:0046689,GO:0046933,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Exons2
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0055@1,KOG1350@2759
EC3.6.3.14
Cds size228
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.8579357-CDS-Ecto-sp13_S_contig65828:6..1201681463906.8579357-CDS-Ecto-sp13_S_contig65828:6..120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65828 7..120 +
1681463906.8732002-CDS-Ecto-sp13_S_contig65828:616..7301681463906.8732002-CDS-Ecto-sp13_S_contig65828:616..730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65828 617..730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65828.17415.1prot_Ecto-sp13_S_contig65828.17415.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65828 7..730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65828.17415.1

>prot_Ecto-sp13_S_contig65828.17415.1 ID=prot_Ecto-sp13_S_contig65828.17415.1|Name=mRNA_Ecto-sp13_S_contig65828.17415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
VNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCMDTGAPIMVP
VGQETLGRIMNVIGEPVDERGPIDSK
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mRNA from alignment at Ecto-sp13_S_contig65828:7..730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65828.17415.1 ID=mRNA_Ecto-sp13_S_contig65828.17415.1|Name=mRNA_Ecto-sp13_S_contig65828.17415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=724bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65828:7..730+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAACGTGGCCGATGGTGCATCGCGACTGGTGCTGGAGGTGGCACAGCA
CCTGGGAGAGAACACCGTGCGCACCATCGCCATGGAGGCCACCGAGGGTC
TCACTCGTGGACAGGTATGCAGATGTACGATATTTTTTACAGTACCTACA
AGCAAGCAGGGCAGAACACCAACGAATAGAAGGATCTCACTGCAGCAAGT
GTATCGACTAGAGGACCCGCCCAAAAGATGGCTTGTCGACCGAAAGACAG
GGTTAGCCACAACATGTCAGGAATCTGGATGCGGACGTCGTCCTCATGTG
TGTGCACAATAATACAGTACAGCAGTAGAAATGTTCACAATGGTTGATAA
TGCCCACAGCGAAAGGTACAGCAACAGAATCATGACCACAGCGTGGAGAG
ACAGCTCGGGATTATGCTTTCGTTACGAGGATTTGTTGTCTGGTTGTCTA
AAAGAACCAAGCCTTATGCCGTGGCGGGAGCAACGCTTGTGAACATGACG
TATCTGCTCGTGGCGTTGTTGTTGCGACCACTCGAAGTGTAAAGTCCCAC
GTTGTGTTTCTACTGTAGAACAATATTTCACGTCTCTTATTTTTTTTTTG
TGTTACACAGGGGTGCATGGACACCGGCGCGCCCATCATGGTGCCCGTGG
GTCAGGAGACTCTCGGACGCATCATGAACGTGATCGGGGAGCCCGTGGAC
GAGAGGGGCCCAATCGACTCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65828:7..730+

>mRNA_Ecto-sp13_S_contig65828.17415.1 ID=mRNA_Ecto-sp13_S_contig65828.17415.1|Name=mRNA_Ecto-sp13_S_contig65828.17415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65828:7..730+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAACGTGGCCGATGGTGCATCGCGACTGGTGCTGGAGGTGGCACAGCA
CCTGGGAGAGAACACCGTGCGCACCATCGCCATGGAGGCCACCGAGGGTC
TCACTCGTGGACAGGGGTGCATGGACACCGGCGCGCCCATCATGGTGCCC
GTGGGTCAGGAGACTCTCGGACGCATCATGAACGTGATCGGGGAGCCCGT
GGACGAGAGGGGCCCAATCGACTCCAAG
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