mRNA_Ecto-sp13_S_contig65800.17413.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65800.17413.1
Unique NamemRNA_Ecto-sp13_S_contig65800.17413.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: UPI00142E2E82 (methyl-accepting chemotaxis protein n=1 Tax=Thalassospira lucentensis TaxID=168935 RepID=UPI00142E2E82)

HSP 1 Score: 363 bits (931), Expect = 5.320e-119
Identity = 211/250 (84.40%), Postives = 225/250 (90.00%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            VAA+MQ +SE IA+TGV+VT GIFIAGTL+LIVMS ILARAIVSAI GLTSKMTRLAN  FD+ L EADRKDEIGEMGRAVVVFRENGLERQKLEARQ+E+D QQRQR+ETQE++IREFD DVVAMMSEVG AV+QLHSVSE LRRSATTADEQSTTVSAGTEEASSNV+LVATAATELSASIHEIAG+VSDTSQMAI           DIQGLN AAVRIGEVIGMINDIAGQTNLLALNATIEAARAG
Sbjct:  276 VAANMQLQSEEIAQTGVVVTLGIFIAGTLILIVMSVILARAIVSAIAGLTSKMTRLANGQFDVTLNEADRKDEIGEMGRAVVVFRENGLERQKLEARQQEVDEQQRQRMETQEENIREFDRDVVAMMSEVGAAVKQLHSVSEALRRSATTADEQSTTVSAGTEEASSNVELVATAATELSASIHEIAGRVSDTSQMAISASARAQTTNEDIQGLNAAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 525          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A367V482_9PROT (Uncharacterized protein n=6 Tax=Thalassospira TaxID=168934 RepID=A0A367V482_9PROT)

HSP 1 Score: 339 bits (870), Expect = 7.480e-110
Identity = 217/250 (86.80%), Postives = 218/250 (87.20%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID QQRQRI TQE+HIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATA                       XXXXXXXXXXX       AAVRIGEVIGMINDIAGQTNLLALNATIEAARAG
Sbjct:  276 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEIDEQQRQRIATQEQHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 525          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: UPI0014321FA5 (methyl-accepting chemotaxis protein n=1 Tax=Thalassospira sp. HF15 TaxID=2722755 RepID=UPI0014321FA5)

HSP 1 Score: 317 bits (813), Expect = 2.570e-101
Identity = 197/250 (78.80%), Postives = 219/250 (87.60%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            VA +MQ R+E IA TGV VTFGIFIAG +++I++S ILARAIV AITGLT KM RLA +DFD++L EADRKDEIGEMGR+VVVFRENGLERQKLEA+Q+E+D QQ        +HIREFD+DVVAMMSEVGTAV+QLHSVSEVLR SA TA+EQSTTVSAG+EEASSNVQLVATAATELSASIHEIAGQ+SDTS    XXXXXXXXXXX IQGLN AAVRIGEVI +I+DIA QTNLLALNATIEAARAG
Sbjct:  276 VAENMQLRAEEIAHTGVQVTFGIFIAGAIIMILLSVILARAIVRAITGLTGKMARLAKNDFDVKLDEADRKDEIGEMGRSVVVFRENGLERQKLEAQQRELDEQQXXXXXXXXRHIREFDDDVVAMMSEVGTAVQQLHSVSEVLRNSAVTANEQSTTVSAGSEEASSNVQLVATAATELSASIHEIAGQISDTSXXXXXXXXXXXXXXXXIQGLNAAAVRIGEVINLISDIAEQTNLLALNATIEAARAG 525          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: UPI0009DD60D4 (methyl-accepting chemotaxis protein n=1 Tax=Thalassospira australica TaxID=1528106 RepID=UPI0009DD60D4)

HSP 1 Score: 308 bits (790), Expect = 6.950e-98
Identity = 181/250 (72.40%), Postives = 206/250 (82.40%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            V+ +MQ R+E IA TGV VTF IFIAG +V+I+MS +LARAIV AITGLT+KM RLA +DFD++L EA RKDEIGEMGR+VVVFRENGLERQKLEA+Q+E+               REFD+D+VAMMSEVGTAV+QLHSVSEVLR SA  A+EQSTTVSAG+EEASS+VQ+VATAATELSASIHEIAGQ+SDTS+MA            DIQGLN AAVRIGEVIG+INDIAGQTNLLALNATIEAARAG
Sbjct:  276 VSENMQLRAEEIAHTGVQVTFAIFIAGAIVMILMSIVLARAIVRAITGLTAKMARLAGNDFDVKLDEAKRKDEIGEMGRSVVVFRENGLERQKLEAQQRELXXXXXXXXXXXXXXXREFDDDIVAMMSEVGTAVQQLHSVSEVLRGSAAAANEQSTTVSAGSEEASSSVQIVATAATELSASIHEIAGQISDTSKMAAAASENAQNTNQDIQGLNAAAVRIGEVIGLINDIAGQTNLLALNATIEAARAG 525          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A1B9VBS2_9PROT (Methyl-accepting chemotaxis sensory transducer n=3 Tax=unclassified Thalassospira TaxID=2648997 RepID=A0A1B9VBS2_9PROT)

HSP 1 Score: 261 bits (668), Expect = 7.170e-80
Identity = 163/250 (65.20%), Postives = 205/250 (82.00%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            +AA  +A +  I++  +M T  +F+ G L L+V+S +L++AIV AI GLT+KMTRLA++DFD+ + E +R DEIGEMGRAV+VFRENG+ER KLEA Q+E D ++R+R+ETQE++IREFD  VVA+M+EVG AV+QLH VS VLR+SA TA  QS  VS+GTEEAS+NVQLVATAATEL+ASI+EI+GQVS+TS MA   XXXXXXXXX       AA++IGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct:  266 IAATKKAEANAISQRSLMTTVVMFVVGALALLVLSVLLSKAIVRAIAGLTTKMTRLAHNDFDVDINEVNRADEIGEMGRAVLVFRENGIERVKLEAAQREADERRRKRLETQERYIREFDQAVVAVMAEVGGAVDQLHQVSNVLRKSADTAANQSLAVSSGTEEASANVQLVATAATELAASINEISGQVSETSXMAQSAXXXXXXXXXXXXXXXDAALKIGEVIGLISDIAGQTNLLALNATIEAARAG 515          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A1X4NEG5_9PROT (Uncharacterized protein n=1 Tax=Thalassospira sp. MCCC 1A01428 TaxID=1470575 RepID=A0A1X4NEG5_9PROT)

HSP 1 Score: 256 bits (654), Expect = 8.400e-78
Identity = 156/249 (62.65%), Postives = 187/249 (75.10%), Query Frame = 1
Query:    4 AADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            A D +A +E IA  G+  +   F+ G LVLIV+  +L+RAIV+AIT LT KMTRLA++DF + L EA RKDEIGEMGRAV+VFRENG+ER+KLE          R R+E QE++IREFD  VV +M+ V  AVE+LH  S VLR SA  A +QS  VSAGTEEAS+NVQLVATAATELSASI+EI+ QVSDTS MA+           +IQGL+ AA+RIGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct:  267 AEDKRAEAEMIAENGLRFSIAAFVIGALVLIVLCGLLSRAIVAAITALTGKMTRLADNDFSVDLSEASRKDEIGEMGRAVLVFRENGIERRKLEEEXXXXXXXXRLRMEAQERNIREFDEVVVKVMASVDQAVERLHQSSGVLRESADIASKQSVAVSAGTEEASANVQLVATAATELSASINEISSQVSDTSNMALAASERARITSDNIQGLDNAAIRIGEVIGLISDIAGQTNLLALNATIEAARAG 515          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A367WPR7_9PROT (Uncharacterized protein n=2 Tax=Thalassospira profundimaris TaxID=502049 RepID=A0A367WPR7_9PROT)

HSP 1 Score: 250 bits (639), Expect = 1.460e-75
Identity = 159/250 (63.60%), Postives = 201/250 (80.40%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            +A + +A++E IA T + VT  +++ G +VL+ +S +L+RAIV AI+GLT KMTRLA +DFD+ L E +R DEIGEMGRAV+VFRENG+ER KLEA QK  D ++R+R+ETQE++I+EFDN VVA+M++V  AV+QLH VS VLR SA TA +QS  VS+G EEASSNVQLVATAATEL+ASI+  +GQVS+TS MA   XXXXXXXXX       +A++IGEVIG+I+DIA QTNLLALNATIEAARAG
Sbjct:  269 LANNQKAKAEQIAATSLTVTVTMYVIGVIVLLGLSVLLSRAIVRAISGLTGKMTRLAENDFDVDLDEVNRADEIGEMGRAVLVFRENGIERVKLEAAQKAQDERRRKRMETQEQYIQEFDNAVVAVMADVAVAVKQLHQVSNVLRNSAETAADQSMAVSSGAEEASSNVQLVATAATELAASINXXSGQVSETSTMAQSAXXXXXXXXXXXXXXXXSAIKIGEVIGLISDIAAQTNLLALNATIEAARAG 518          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A285TW00_9PROT (Methyl-accepting chemotaxis protein n=1 Tax=Thalassospira xiamenensis TaxID=220697 RepID=A0A285TW00_9PROT)

HSP 1 Score: 242 bits (617), Expect = 1.390e-74
Identity = 157/250 (62.80%), Postives = 194/250 (77.60%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            +A  M+A +E I+R  ++ T  +F+ G L L+V+S +L++AIV AITGLT KMTRLA++DFD+++ E +R DEIG MGRAV+VFRENG+ER KLEA Q+E D ++R+R+ETQE++IREFD  VV++M+EVG AVEQLH VS VLRRSA TA  QS  VS+GTEEASSNVQLVATAATEL+                  XXXXXXXXXXX    LN AA++IGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct:   46 IATAMKAEAEAISRRSLITTVVMFVVGALALLVLSILLSKAIVRAITGLTGKMTRLADNDFDVEINEVNRADEIGTMGRAVLVFRENGIERVKLEAAQREADERRRKRMETQEQYIREFDQAVVSVMAEVGVAVEQLHQVSNVLRRSADTAASQSMAVSSGTEEASSNVQLVATAATELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDAALKIGEVIGLISDIAGQTNLLALNATIEAARAG 295          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A367WAC3_9PROT (Uncharacterized protein n=1 Tax=Thalassospira profundimaris TaxID=502049 RepID=A0A367WAC3_9PROT)

HSP 1 Score: 247 bits (630), Expect = 2.850e-74
Identity = 159/250 (63.60%), Postives = 200/250 (80.00%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            +AA  + +++ IA+T + VT  IF+ G + L+ +SF+L+RAIV AI GLTSKMTRLA++DFD+ + E +R DEIGEMGRAV+VFRENG+ER KLEA QK  D ++R+R+ETQE++I+EFD  VVA+M++V TAV+QLH VS +LR SA TA +QS  VS+G EEASSNVQLVATAATEL+ASI+E  G       MA XXXXXXXXXXX     N +A++IGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct:  265 LAAAEKQKADQIAKTSLTVTVSIFVIGIIALLGLSFVLSRAIVRAIGGLTSKMTRLADNDFDVDINEVNRADEIGEMGRAVLVFRENGIERVKLEAAQKAEDAKRRKRMETQEQYIQEFDRAVVAVMADVATAVKQLHQVSGILRASADTAADQSMAVSSGAEEASSNVQLVATAATELAASINEXXGXXXXXXSMAQXXXXXXXXXXXXXXXXNDSAIKIGEVIGLISDIAGQTNLLALNATIEAARAG 514          
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A154L042_9PROT (Uncharacterized protein n=11 Tax=Thalassospira TaxID=168934 RepID=A0A154L042_9PROT)

HSP 1 Score: 242 bits (617), Expect = 2.380e-72
Identity = 157/250 (62.80%), Postives = 194/250 (77.60%), Query Frame = 1
Query:    1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
            +A  M+A +E I+R  ++ T  +F+ G L L+V+S +L++AIV AITGLT KMTRLA++DFD+++ E +R DEIG MGRAV+VFRENG+ER KLEA Q+E D ++R+R+ETQE++IREFD  VV++M+EVG AVEQLH VS VLRRSA TA  QS  VS+GTEEASSNVQLVATAATEL+                  XXXXXXXXXXX    LN AA++IGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct:  266 IATAMKAEAEAISRRSLITTVVMFVVGALALLVLSILLSKAIVRAITGLTGKMTRLADNDFDVEINEVNRADEIGTMGRAVLVFRENGIERVKLEAAQREADERRRKRMETQEQYIREFDQAVVSVMAEVGVAVEQLHQVSNVLRRSADTAASQSMAVSSGTEEASSNVQLVATAATELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDAALKIGEVIGLISDIAGQTNLLALNATIEAARAG 515          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00142E2E825.320e-11984.40methyl-accepting chemotaxis protein n=1 Tax=Thalas... [more]
A0A367V482_9PROT7.480e-11086.80Uncharacterized protein n=6 Tax=Thalassospira TaxI... [more]
UPI0014321FA52.570e-10178.80methyl-accepting chemotaxis protein n=1 Tax=Thalas... [more]
UPI0009DD60D46.950e-9872.40methyl-accepting chemotaxis protein n=1 Tax=Thalas... [more]
A0A1B9VBS2_9PROT7.170e-8065.20Methyl-accepting chemotaxis sensory transducer n=3... [more]
A0A1X4NEG5_9PROT8.400e-7862.65Uncharacterized protein n=1 Tax=Thalassospira sp. ... [more]
A0A367WPR7_9PROT1.460e-7563.60Uncharacterized protein n=2 Tax=Thalassospira prof... [more]
A0A285TW00_9PROT1.390e-7462.80Methyl-accepting chemotaxis protein n=1 Tax=Thalas... [more]
A0A367WAC3_9PROT2.850e-7463.60Uncharacterized protein n=1 Tax=Thalassospira prof... [more]
A0A154L042_9PROT2.380e-7262.80Uncharacterized protein n=11 Tax=Thalassospira Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65800contigEcto-sp13_S_contig65800:2..751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score191.0
Seed ortholog evalue3.2e-46
Seed eggNOG ortholog1528106.JRJE01000009_gene1788
Model size750
KEGG koko:K03406
KEGG Pathwayko02020,ko02030,map02020,map02030
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.methyl-accepting chemotaxis protein
EggNOG OGs1MU9B@1224,2JPFH@204441,2TQR7@28211,COG0840@1,COG0840@2
Cds size375
COG Functional cat.NT
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.7281563-UTR-Ecto-sp13_S_contig65800:1..3761681463906.7281563-UTR-Ecto-sp13_S_contig65800:1..376Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65800 2..376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.7406633-CDS-Ecto-sp13_S_contig65800:376..7511681463906.7406633-CDS-Ecto-sp13_S_contig65800:376..751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65800 377..751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65800.17413.1prot_Ecto-sp13_S_contig65800.17413.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65800 377..751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65800.17413.1

>prot_Ecto-sp13_S_contig65800.17413.1 ID=prot_Ecto-sp13_S_contig65800.17413.1|Name=mRNA_Ecto-sp13_S_contig65800.17413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATA
ATELSASIHEIAGQVSDTSQMAISASERAQTTNEDIQGLNTAAVRIGEVI
GMINDIAGQTNLLALNATIEAARAG
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mRNA from alignment at Ecto-sp13_S_contig65800:2..751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65800.17413.1 ID=mRNA_Ecto-sp13_S_contig65800.17413.1|Name=mRNA_Ecto-sp13_S_contig65800.17413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65800:2..751+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCAGCAGACATGCAGGCGCGTTCCGAAAACATCGCGCGAACGGGTGT GATGGTGACCTTTGGCATCTTTATTGCCGGGACGCTTGTGCTGATTGTCA TGTCGTTCATCTTGGCGCGTGCGATTGTCAGTGCGATTACCGGGCTGACA TCAAAAATGACCCGTTTGGCCAACAGTGACTTCGACCTGCAACTGGGCGA AGCCGACCGTAAGGATGAAATCGGCGAGATGGGCCGTGCGGTCGTTGTGT TTCGTGAAAACGGGCTGGAGCGGCAAAAACTTGAAGCCCGTCAAAAGGAA ATTGACTAACAACAACGCCAACGCATCGAAACGCAGGAAAAACATATTCG CGAGTTTGACAATGATGTGGTCGCGATGATGAGCGAAGTGGGCACAGCGG TCGAGCAACTTCATTCCGTGTCAGAAGTCCTGCGGCGCAGTGCGACAACG GCGGATGAGCAATCAACAACCGTGTCGGCAGGGACGGAAGAAGCATCGTC GAATGTGCAACTTGTCGCAACGGCGGCAACTGAACTTTCCGCATCCATTC ATGAAATTGCCGGACAGGTCAGTGACACGTCGCAAATGGCCATTTCGGCC AGTGAGCGGGCGCAAACCACCAATGAAGATATTCAGGGGTTGAATACGGC GGCCGTGCGCATTGGCGAAGTCATTGGAATGATCAATGACATTGCCGGGC AAACGAACCTGCTTGCGCTTAATGCCACCATCGAAGCAGCGCGCGCAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65800:2..751+

>mRNA_Ecto-sp13_S_contig65800.17413.1 ID=mRNA_Ecto-sp13_S_contig65800.17413.1|Name=mRNA_Ecto-sp13_S_contig65800.17413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65800:2..751+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGCGAAGTGGGCACAGCGGTCGAGCAACTTCATTCCGTGTCAGA
AGTCCTGCGGCGCAGTGCGACAACGGCGGATGAGCAATCAACAACCGTGT
CGGCAGGGACGGAAGAAGCATCGTCGAATGTGCAACTTGTCGCAACGGCG
GCAACTGAACTTTCCGCATCCATTCATGAAATTGCCGGACAGGTCAGTGA
CACGTCGCAAATGGCCATTTCGGCCAGTGAGCGGGCGCAAACCACCAATG
AAGATATTCAGGGGTTGAATACGGCGGCCGTGCGCATTGGCGAAGTCATT
GGAATGATCAATGACATTGCCGGGCAAACGAACCTGCTTGCGCTTAATGC
CACCATCGAAGCAGCGCGCGCAGGC
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