mRNA_Ecto-sp13_S_contig65800.17413.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: UPI00142E2E82 (methyl-accepting chemotaxis protein n=1 Tax=Thalassospira lucentensis TaxID=168935 RepID=UPI00142E2E82) HSP 1 Score: 363 bits (931), Expect = 5.320e-119 Identity = 211/250 (84.40%), Postives = 225/250 (90.00%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
VAA+MQ +SE IA+TGV+VT GIFIAGTL+LIVMS ILARAIVSAI GLTSKMTRLAN FD+ L EADRKDEIGEMGRAVVVFRENGLERQKLEARQ+E+D QQRQR+ETQE++IREFD DVVAMMSEVG AV+QLHSVSE LRRSATTADEQSTTVSAGTEEASSNV+LVATAATELSASIHEIAG+VSDTSQMAI DIQGLN AAVRIGEVIGMINDIAGQTNLLALNATIEAARAG
Sbjct: 276 VAANMQLQSEEIAQTGVVVTLGIFIAGTLILIVMSVILARAIVSAIAGLTSKMTRLANGQFDVTLNEADRKDEIGEMGRAVVVFRENGLERQKLEARQQEVDEQQRQRMETQEENIREFDRDVVAMMSEVGAAVKQLHSVSEALRRSATTADEQSTTVSAGTEEASSNVELVATAATELSASIHEIAGRVSDTSQMAISASARAQTTNEDIQGLNAAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 525
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A367V482_9PROT (Uncharacterized protein n=6 Tax=Thalassospira TaxID=168934 RepID=A0A367V482_9PROT) HSP 1 Score: 339 bits (870), Expect = 7.480e-110 Identity = 217/250 (86.80%), Postives = 218/250 (87.20%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID QQRQRI TQE+HIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATA XXXXXXXXXXX AAVRIGEVIGMINDIAGQTNLLALNATIEAARAG
Sbjct: 276 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEIDEQQRQRIATQEQHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 525
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: UPI0014321FA5 (methyl-accepting chemotaxis protein n=1 Tax=Thalassospira sp. HF15 TaxID=2722755 RepID=UPI0014321FA5) HSP 1 Score: 317 bits (813), Expect = 2.570e-101 Identity = 197/250 (78.80%), Postives = 219/250 (87.60%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
VA +MQ R+E IA TGV VTFGIFIAG +++I++S ILARAIV AITGLT KM RLA +DFD++L EADRKDEIGEMGR+VVVFRENGLERQKLEA+Q+E+D QQ +HIREFD+DVVAMMSEVGTAV+QLHSVSEVLR SA TA+EQSTTVSAG+EEASSNVQLVATAATELSASIHEIAGQ+SDTS XXXXXXXXXXX IQGLN AAVRIGEVI +I+DIA QTNLLALNATIEAARAG
Sbjct: 276 VAENMQLRAEEIAHTGVQVTFGIFIAGAIIMILLSVILARAIVRAITGLTGKMARLAKNDFDVKLDEADRKDEIGEMGRSVVVFRENGLERQKLEAQQRELDEQQXXXXXXXXRHIREFDDDVVAMMSEVGTAVQQLHSVSEVLRNSAVTANEQSTTVSAGSEEASSNVQLVATAATELSASIHEIAGQISDTSXXXXXXXXXXXXXXXXIQGLNAAAVRIGEVINLISDIAEQTNLLALNATIEAARAG 525
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: UPI0009DD60D4 (methyl-accepting chemotaxis protein n=1 Tax=Thalassospira australica TaxID=1528106 RepID=UPI0009DD60D4) HSP 1 Score: 308 bits (790), Expect = 6.950e-98 Identity = 181/250 (72.40%), Postives = 206/250 (82.40%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
V+ +MQ R+E IA TGV VTF IFIAG +V+I+MS +LARAIV AITGLT+KM RLA +DFD++L EA RKDEIGEMGR+VVVFRENGLERQKLEA+Q+E+ REFD+D+VAMMSEVGTAV+QLHSVSEVLR SA A+EQSTTVSAG+EEASS+VQ+VATAATELSASIHEIAGQ+SDTS+MA DIQGLN AAVRIGEVIG+INDIAGQTNLLALNATIEAARAG
Sbjct: 276 VSENMQLRAEEIAHTGVQVTFAIFIAGAIVMILMSIVLARAIVRAITGLTAKMARLAGNDFDVKLDEAKRKDEIGEMGRSVVVFRENGLERQKLEAQQRELXXXXXXXXXXXXXXXREFDDDIVAMMSEVGTAVQQLHSVSEVLRGSAAAANEQSTTVSAGSEEASSSVQIVATAATELSASIHEIAGQISDTSKMAAAASENAQNTNQDIQGLNAAAVRIGEVIGLINDIAGQTNLLALNATIEAARAG 525
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A1B9VBS2_9PROT (Methyl-accepting chemotaxis sensory transducer n=3 Tax=unclassified Thalassospira TaxID=2648997 RepID=A0A1B9VBS2_9PROT) HSP 1 Score: 261 bits (668), Expect = 7.170e-80 Identity = 163/250 (65.20%), Postives = 205/250 (82.00%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
+AA +A + I++ +M T +F+ G L L+V+S +L++AIV AI GLT+KMTRLA++DFD+ + E +R DEIGEMGRAV+VFRENG+ER KLEA Q+E D ++R+R+ETQE++IREFD VVA+M+EVG AV+QLH VS VLR+SA TA QS VS+GTEEAS+NVQLVATAATEL+ASI+EI+GQVS+TS MA XXXXXXXXX AA++IGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct: 266 IAATKKAEANAISQRSLMTTVVMFVVGALALLVLSVLLSKAIVRAIAGLTTKMTRLAHNDFDVDINEVNRADEIGEMGRAVLVFRENGIERVKLEAAQREADERRRKRLETQERYIREFDQAVVAVMAEVGGAVDQLHQVSNVLRKSADTAANQSLAVSSGTEEASANVQLVATAATELAASINEISGQVSETSXMAQSAXXXXXXXXXXXXXXXDAALKIGEVIGLISDIAGQTNLLALNATIEAARAG 515
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A1X4NEG5_9PROT (Uncharacterized protein n=1 Tax=Thalassospira sp. MCCC 1A01428 TaxID=1470575 RepID=A0A1X4NEG5_9PROT) HSP 1 Score: 256 bits (654), Expect = 8.400e-78 Identity = 156/249 (62.65%), Postives = 187/249 (75.10%), Query Frame = 1
Query: 4 AADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
A D +A +E IA G+ + F+ G LVLIV+ +L+RAIV+AIT LT KMTRLA++DF + L EA RKDEIGEMGRAV+VFRENG+ER+KLE R R+E QE++IREFD VV +M+ V AVE+LH S VLR SA A +QS VSAGTEEAS+NVQLVATAATELSASI+EI+ QVSDTS MA+ +IQGL+ AA+RIGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct: 267 AEDKRAEAEMIAENGLRFSIAAFVIGALVLIVLCGLLSRAIVAAITALTGKMTRLADNDFSVDLSEASRKDEIGEMGRAVLVFRENGIERRKLEEEXXXXXXXXRLRMEAQERNIREFDEVVVKVMASVDQAVERLHQSSGVLRESADIASKQSVAVSAGTEEASANVQLVATAATELSASINEISSQVSDTSNMALAASERARITSDNIQGLDNAAIRIGEVIGLISDIAGQTNLLALNATIEAARAG 515
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A367WPR7_9PROT (Uncharacterized protein n=2 Tax=Thalassospira profundimaris TaxID=502049 RepID=A0A367WPR7_9PROT) HSP 1 Score: 250 bits (639), Expect = 1.460e-75 Identity = 159/250 (63.60%), Postives = 201/250 (80.40%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
+A + +A++E IA T + VT +++ G +VL+ +S +L+RAIV AI+GLT KMTRLA +DFD+ L E +R DEIGEMGRAV+VFRENG+ER KLEA QK D ++R+R+ETQE++I+EFDN VVA+M++V AV+QLH VS VLR SA TA +QS VS+G EEASSNVQLVATAATEL+ASI+ +GQVS+TS MA XXXXXXXXX +A++IGEVIG+I+DIA QTNLLALNATIEAARAG
Sbjct: 269 LANNQKAKAEQIAATSLTVTVTMYVIGVIVLLGLSVLLSRAIVRAISGLTGKMTRLAENDFDVDLDEVNRADEIGEMGRAVLVFRENGIERVKLEAAQKAQDERRRKRMETQEQYIQEFDNAVVAVMADVAVAVKQLHQVSNVLRNSAETAADQSMAVSSGAEEASSNVQLVATAATELAASINXXSGQVSETSTMAQSAXXXXXXXXXXXXXXXXSAIKIGEVIGLISDIAAQTNLLALNATIEAARAG 518
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A285TW00_9PROT (Methyl-accepting chemotaxis protein n=1 Tax=Thalassospira xiamenensis TaxID=220697 RepID=A0A285TW00_9PROT) HSP 1 Score: 242 bits (617), Expect = 1.390e-74 Identity = 157/250 (62.80%), Postives = 194/250 (77.60%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
+A M+A +E I+R ++ T +F+ G L L+V+S +L++AIV AITGLT KMTRLA++DFD+++ E +R DEIG MGRAV+VFRENG+ER KLEA Q+E D ++R+R+ETQE++IREFD VV++M+EVG AVEQLH VS VLRRSA TA QS VS+GTEEASSNVQLVATAATEL+ XXXXXXXXXXX LN AA++IGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct: 46 IATAMKAEAEAISRRSLITTVVMFVVGALALLVLSILLSKAIVRAITGLTGKMTRLADNDFDVEINEVNRADEIGTMGRAVLVFRENGIERVKLEAAQREADERRRKRMETQEQYIREFDQAVVSVMAEVGVAVEQLHQVSNVLRRSADTAASQSMAVSSGTEEASSNVQLVATAATELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDAALKIGEVIGLISDIAGQTNLLALNATIEAARAG 295
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A367WAC3_9PROT (Uncharacterized protein n=1 Tax=Thalassospira profundimaris TaxID=502049 RepID=A0A367WAC3_9PROT) HSP 1 Score: 247 bits (630), Expect = 2.850e-74 Identity = 159/250 (63.60%), Postives = 200/250 (80.00%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
+AA + +++ IA+T + VT IF+ G + L+ +SF+L+RAIV AI GLTSKMTRLA++DFD+ + E +R DEIGEMGRAV+VFRENG+ER KLEA QK D ++R+R+ETQE++I+EFD VVA+M++V TAV+QLH VS +LR SA TA +QS VS+G EEASSNVQLVATAATEL+ASI+E G MA XXXXXXXXXXX N +A++IGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct: 265 LAAAEKQKADQIAKTSLTVTVSIFVIGIIALLGLSFVLSRAIVRAIGGLTSKMTRLADNDFDVDINEVNRADEIGEMGRAVLVFRENGIERVKLEAAQKAEDAKRRKRMETQEQYIQEFDRAVVAVMADVATAVKQLHQVSGILRASADTAADQSMAVSSGAEEASSNVQLVATAATELAASINEXXGXXXXXXSMAQXXXXXXXXXXXXXXXXNDSAIKIGEVIGLISDIAGQTNLLALNATIEAARAG 514
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Match: A0A154L042_9PROT (Uncharacterized protein n=11 Tax=Thalassospira TaxID=168934 RepID=A0A154L042_9PROT) HSP 1 Score: 242 bits (617), Expect = 2.380e-72 Identity = 157/250 (62.80%), Postives = 194/250 (77.60%), Query Frame = 1
Query: 1 VAADMQARSENIARTGVMVTFGIFIAGTLVLIVMSFILARAIVSAITGLTSKMTRLANSDFDLQLGEADRKDEIGEMGRAVVVFRENGLERQKLEARQKEID*QQRQRIETQEKHIREFDNDVVAMMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAATELSASIHEIAGQVSDTSQMAIXXXXXXXXXXXDIQGLNTAAVRIGEVIGMINDIAGQTNLLALNATIEAARAG 750
+A M+A +E I+R ++ T +F+ G L L+V+S +L++AIV AITGLT KMTRLA++DFD+++ E +R DEIG MGRAV+VFRENG+ER KLEA Q+E D ++R+R+ETQE++IREFD VV++M+EVG AVEQLH VS VLRRSA TA QS VS+GTEEASSNVQLVATAATEL+ XXXXXXXXXXX LN AA++IGEVIG+I+DIAGQTNLLALNATIEAARAG
Sbjct: 266 IATAMKAEAEAISRRSLITTVVMFVVGALALLVLSILLSKAIVRAITGLTGKMTRLADNDFDVEINEVNRADEIGTMGRAVLVFRENGIERVKLEAAQREADERRRKRMETQEQYIREFDQAVVSVMAEVGVAVEQLHQVSNVLRRSADTAASQSMAVSSGTEEASSNVQLVATAATELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDAALKIGEVIGLISDIAGQTNLLALNATIEAARAG 515 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65800.17413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig65800.17413.1 >prot_Ecto-sp13_S_contig65800.17413.1 ID=prot_Ecto-sp13_S_contig65800.17413.1|Name=mRNA_Ecto-sp13_S_contig65800.17413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp MMSEVGTAVEQLHSVSEVLRRSATTADEQSTTVSAGTEEASSNVQLVATAback to top mRNA from alignment at Ecto-sp13_S_contig65800:2..751+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig65800.17413.1 ID=mRNA_Ecto-sp13_S_contig65800.17413.1|Name=mRNA_Ecto-sp13_S_contig65800.17413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65800:2..751+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65800:2..751+ >mRNA_Ecto-sp13_S_contig65800.17413.1 ID=mRNA_Ecto-sp13_S_contig65800.17413.1|Name=mRNA_Ecto-sp13_S_contig65800.17413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65800:2..751+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |