mRNA_Ecto-sp13_S_contig658.17411.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig658.17411.1
Unique NamemRNA_Ecto-sp13_S_contig658.17411.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig658.17411.1 vs. uniprot
Match: D7G4S7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.560e-29
Identity = 285/297 (95.96%), Postives = 288/297 (96.97%), Query Frame = 3 
Query:   81 MRRECAQHQCTTMPTYGTARSKKPEYCAKHKHPGMVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAVYAKTQGKRVGNAPDRIPPRTKKRPRQPGDVPSAQAAVKQEPDQGMPLQSESFVSRARSIGEEAKSD 971
            MRRECAQHQCTTMPTYGTARSKKPEYCAKH+HPGMVDV   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NAVYAKTQGKR  NAPDRIPPRTKKRPRQPGDVPS QA VKQEPDQGMPL+SESFV RAR+IGEEAKSD
Sbjct:    1 MRRECAQHQCTTMPTYGTARSKKPEYCAKHRHPGMVDVLNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINAVYAKTQGKRARNAPDRIPPRTKKRPRQPGDVPSVQAPVKQEPDQGMPLESESFVPRARNIGEEAKSD 297
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BLAST of mRNA_Ecto-sp13_S_contig658.17411.1 vs. uniprot
Match: A0A6H5JHF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHF4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.220e-25
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 3 
Query:   15 ELWDLPATKNLRARARSWIIQTMRRECAQHQCTTMPTYGTARSKKPEYCAKHKHPGMVDV 194
            ELW+LPATK  +   RSWI++TMRRECAQHQCTTMPTYGTA+SKKPEYCAKHKHPGMVDV
Sbjct:   10 ELWELPATK--KPHTRSWIMRTMRRECAQHQCTTMPTYGTAQSKKPEYCAKHKHPGMVDV 67
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BLAST of mRNA_Ecto-sp13_S_contig658.17411.1 vs. uniprot
Match: A0A6H5JEU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEU0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.880e-14
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:  765 NAVYAKTQGKRVGNAPDRIPPRTKKRPRQPGDVPSAQAAVKQEPDQGMPLQSE 923
            NAVYAKTQGKR  NAPDRI  RTKKRPRQPGDVPS QA VKQEP QGMPL+S+
Sbjct:  157 NAVYAKTQGKRARNAPDRITSRTKKRPRQPGDVPSVQAPVKQEPGQGMPLESQ 209
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig658.17411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4S7_ECTSI5.560e-2995.96EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JHF4_9PHAE1.220e-2583.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEU0_9PHAE1.880e-1483.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig658contigEcto-sp13_S_contig658:6449..10215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score139.4
Seed ortholog evalue2.7e-30
Seed eggNOG ortholog2880.D7G4S7
Model size3277
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-20_000530.1
Cds size894
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.5432458-UTR-Ecto-sp13_S_contig658:6448..65281681463906.5432458-UTR-Ecto-sp13_S_contig658:6448..6528Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig658 6449..6528 +
1681463906.5870993-UTR-Ecto-sp13_S_contig658:7912..102151681463906.5870993-UTR-Ecto-sp13_S_contig658:7912..10215Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig658 7913..10215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.5573738-CDS-Ecto-sp13_S_contig658:6528..70411681463906.5573738-CDS-Ecto-sp13_S_contig658:6528..7041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig658 6529..7041 +
1681463906.5700157-CDS-Ecto-sp13_S_contig658:7531..79121681463906.5700157-CDS-Ecto-sp13_S_contig658:7531..7912Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig658 7532..7912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig658.17411.1prot_Ecto-sp13_S_contig658.17411.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig658 6529..7912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig658.17411.1

>prot_Ecto-sp13_S_contig658.17411.1 ID=prot_Ecto-sp13_S_contig658.17411.1|Name=mRNA_Ecto-sp13_S_contig658.17411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=298bp
MRRECAQHQCTTMPTYGTARSKKPEYCAKHKHPGMVDVLNRRCGHPACSK
TPSYGLQGTKTAIFCVKHSKRGMVNVISRRCVNNECDKLASFGCTGTKKA
EYCTVHAKEGMSNVLDRVCSHLGCNKQPNFGVDGSKRAEFCQEHAKEGMI
NVRSRKCAHPLCTTRASFGPHGTKTPAFCSRHAKDGMINVRCRSCAHPTC
FKRPYYCAEGSTRPEFCSQHAKPGMVNVNAVYAKTQGKRVGNAPDRIPPR
TKKRPRQPGDVPSAQAAVKQEPDQGMPLQSESFVSRARSIGEEAKSD*
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mRNA from alignment at Ecto-sp13_S_contig658:6449..10215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig658.17411.1 ID=mRNA_Ecto-sp13_S_contig658.17411.1|Name=mRNA_Ecto-sp13_S_contig658.17411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3767bp|location=Sequence derived from alignment at Ecto-sp13_S_contig658:6449..10215+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGACAAAATAGGAGCTGTGGGATTTACCGGCTACGAAGAACCTACGT
GCACGCGCAAGAAGCTGGATTATTCAAACGATGCGTAGAGAATGCGCACA
GCATCAGTGTACCACAATGCCAACATACGGCACAGCGCGGTCCAAAAAAC
CGGAGTACTGCGCCAAGCATAAGCACCCCGGGATGGTAGACGTTCTCAAC
AGGAGGTGTGGCCACCCGGCTTGTTCGAAAACTCCGTCGTACGGTCTTCA
AGGCACCAAGACCGCGATTTTCTGCGTGAAACACTCGAAGAGGGGTATGG
TGAACGTAATCAGCAGGAGGTGTGTCAACAACGAGTGCGACAAGCTGGCA
TCCTTCGGCTGCACGGGCACCAAGAAGGCGGAATACTGCACCGTGCACGC
GAAGGAGGGAATGAGTAACGTTCTCGACAGGGTGTGCAGCCATCTCGGAT
GCAACAAACAGCCGAACTTTGGCGTGGACGGCTCCAAGAGGGCAGAGTTC
TGTCAGGAGCATGCGAAGGAGGGGATGATTAACGTTCGCAGCAGGAAATG
CGCCCATCCACTTTGCACAACCCGCGCATCTTTCGGCCCCCATGTGAGTA
AATAGTGCACGACACCTCCGTGGTACCGTAGCGTTTGCAGACAGCCGTCG
CTACAAAGCTCTCGACGTAAGTAGGCCTGACGAGCAGCCAACAAGCAGTG
GTATGCTCTAGTGCCGTTGCAGTGCGGCGTGCCTCGGAACGAAGAGATAT
TCCTCAATTGCAAGTTGGAGTTTCAGTCTGCGCTATCCCGAAAAATGCAC
TACCCAAGTCTTGTCCCGAAATTCCCATCCCTTAGTTCAATCAAATATAT
GATCGTACTGCGAAACACTCCACGTCCCTGCTGTGGTGTATTTAAGCTTT
GCTACTAAATATTACACGTGAATTGTGTAGCTTCCGCTCCGAGGCAAATT
CCACACCAGTGCTGCATGAAGGTGCGCCAGGGATAGCGCAGCAGCGGTAG
CAATAGAACGTAGACTCCCCCCTCGCCTCACCAGGCACACGTCACTCACA
TCGTTCCTGCTGCCGCGTCAATTTCCGTCTCAGGGAACAAAAACACCAGC
ATTCTGCAGCCGGCACGCAAAAGACGGAATGATCAACGTCCGATGCCGAA
GCTGCGCCCATCCCACCTGCTTCAAGAGGCCGTACTACTGCGCGGAAGGG
TCAACCCGGCCGGAATTCTGTAGCCAGCACGCTAAACCCGGGATGGTAAA
CGTAAACGCTGTCTATGCCAAGACCCAAGGCAAGCGTGTTGGGAACGCCC
CTGACAGGATACCCCCAAGGACCAAAAAGCGCCCGCGCCAACCCGGTGAC
GTCCCGTCGGCGCAAGCGGCAGTTAAGCAGGAACCTGACCAAGGGATGCC
CCTCCAAAGCGAGTCCTTCGTCTCAAGAGCCAGGAGTATTGGGGAGGAGG
CGAAGTCTGATTAGGCTACGCAAGCTGGACGAATAAGTGGTCGGAGATGA
TTGTTTGTGTGTGCGTGTTTCTTCGATGCTGCTGTGCTAGCCAACGGCCC
AATTTTTGCCAAGTCGATTTCACACACCTCTTTGGTACATTTATGCGGTG
AAGGCCTCAGCCGGGTGTTCTTGTTGGCCGAGTGTTTCGGTTGATATCCT
TGTGAGGCCCGGGTTCGGGTCTCCCCGAGCGTAGTGCTTGCGTGCATCTT
GTGGAAGCGCATGGTGGTGTAAAAGAGGGAGGGGACTGCTGAACGGTTCT
AGCGCTTATTAGTTGAAGACAAGCACAGCAGGAGGAAACGCGGAGAAAAA
CAAACTCCCATGTGTACGATACCGCCCTTGTGTGTGACCCCGGATGGTGA
TGGTGGGTCAAACATATACCCAAGTGTTGGTGTAATGTCACTCAGAGTAG
ACGGGATGAATACACGGGGCTAAAGATCACACAAGAGTTCTTTGTTTTGT
GAGTTGCTCATGTACAACTCGAAGCCATTGTTAGCACTTGAAGGGGGAAT
GGTGAGGGTTTGTTCGGTTTGTGGAAGAATGTGAAGAGCGGAAACACGAA
GCAAATTGAGCCAACCGGCTCCTTGACGACCCTCTACCCCAAGTCCAAAG
CGAAACGGCCCCCCAAGATCTTGAGGTTGTCACCAGCTGGCCATGTTGTG
CCAGTATTTATTCCAGCGCCCCCGATGACGAGGCACTGTTGACCCAGACG
AAATTGTGCAGCGCAGCAGAAGAGGCTTTTGACGTCACGTTCCATTCATT
GTTTTGTGGCGACGACCGTCAGAAGACTAAGAACAACATTCTCCAAGTTC
ACGTCCCATTTTCTCTGCCTTTGTGTACATTCCTCCCTCTTCTTCAGGTC
ACTTCAATCCTGAGGGAAAGCAGCAGCCGGAGAAGAAAGGGTTGGGATGA
GGGGGGTCACGTTGCGCCTTAGGTGACCCTCGGTTCGGGTGCTCAACTAG
CGTAGACAAGACGACCAACCGTGGTTGATTTGTTGATACGATATCTGGTG
CTGCTATGATTTTCCGTTGCTTCGGCACGAAGCGTGACCTACGGCGGTAT
CGACATCTGCTTGCTTGAAATGCAATTGCAGAACAAGGCGTTTTTATTTT
TTTGCAACAGCCAAGGATATGCGTTGCTAGCACTGGCTGTCTATGAAGGC
AGTCGTTTGTGCTCACGGTTATCTTGTCCGGGCGGAACCGCACACTACAC
TACGTACGCTCAACCGGATTACTTGCAGTTTAGACGCATGTAGGTGGGGT
GGTTTCTGCCGTAGAACAGACGGCAAAGAAGGGGCGTTCCAAGCAGCTGT
AACGGATACCTCCGCCTCCTCCGCCCCCTCCGGCCGCACACATGTGGGAC
AGGCATGGTCTCAACAGACACCACTAGTCAACAGGTCTGTCGGTCGGTCA
TTGACCTGAGTATCAGGGTCTGGCGTCTTGCCGTCCGTGTTGTTTTGCTC
TTCGGGTTCGTGGTTCGTTCGTGAGTGGTGCCTCATGGAGGTTTATTTTG
CACGATTCCCTAGTTTGTTCTGTGTACAGCAGCAGCAATAAGTGGTGTTG
GGAATGGAAACTTTTTTTGGGCTGACGAGCCTCTGGTGCTTCGCAATCGG
TGGTGTGTGGCCTAACTAACTGACCATTGGACAACGAAAGCGACCCCATT
CCCGAGGCGGCAAGTGTCAGAGTCTTGTCGTGGGATAAATGTGGCAGCAG
CGTGGAAGTACAAGAGTTTTTCCGAGACGCAAGTAGGTGTCGGCACGTAC
ATACGTTCGTGTTACTTTGGCAACGATGCTGAATGCGTACGGGCGAAAAC
CACTCAGCGCTACGCATTGATCCTGTTTGATTTCTGTAGACGTTATGATT
GAAAAATGAACGAGAAGAGTGGTTTTCAAAAAAAAAAATTACCTCGTGCA
TGGGGTGTGTAGACCACTTGTTTTTCTAGGGGGAATCCAACAAGTGAGAA
AATCTCCAACTTGCTGTAGAAAACCAAGGGGCTGGGGTGGACGGGGCTTG
CATCTATCTGGGAGTATCTCAATCGATGTCGCGCTAGTAACGAATAAAAT
TATTTTGTCTGTACACTACTCACAAGCAAACGTTGTTCAGTTAGACGGAA
CTAGTTCTCGCGTTGAGCTTGTTTTAGTACTTTTCTTGCCGCCACATTGC
CGGGTGTTGCAAGCACATGCAAAACAACACATGGACTACATACCGTGGGG
CTCGCTCGTGTCTCCGGCGTGTTCTTCCATGATTGATCGTCGATAATCTA
TTCAGAATCAATCAATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig658:6449..10215+

>mRNA_Ecto-sp13_S_contig658.17411.1 ID=mRNA_Ecto-sp13_S_contig658.17411.1|Name=mRNA_Ecto-sp13_S_contig658.17411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig658:6449..10215+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTAGAGAATGCGCACAGCATCAGTGTACCACAATGCCAACATACGG
CACAGCGCGGTCCAAAAAACCGGAGTACTGCGCCAAGCATAAGCACCCCG
GGATGGTAGACGTTCTCAACAGGAGGTGTGGCCACCCGGCTTGTTCGAAA
ACTCCGTCGTACGGTCTTCAAGGCACCAAGACCGCGATTTTCTGCGTGAA
ACACTCGAAGAGGGGTATGGTGAACGTAATCAGCAGGAGGTGTGTCAACA
ACGAGTGCGACAAGCTGGCATCCTTCGGCTGCACGGGCACCAAGAAGGCG
GAATACTGCACCGTGCACGCGAAGGAGGGAATGAGTAACGTTCTCGACAG
GGTGTGCAGCCATCTCGGATGCAACAAACAGCCGAACTTTGGCGTGGACG
GCTCCAAGAGGGCAGAGTTCTGTCAGGAGCATGCGAAGGAGGGGATGATT
AACGTTCGCAGCAGGAAATGCGCCCATCCACTTTGCACAACCCGCGCATC
TTTCGGCCCCCATGGAACAAAAACACCAGCATTCTGCAGCCGGCACGCAA
AAGACGGAATGATCAACGTCCGATGCCGAAGCTGCGCCCATCCCACCTGC
TTCAAGAGGCCGTACTACTGCGCGGAAGGGTCAACCCGGCCGGAATTCTG
TAGCCAGCACGCTAAACCCGGGATGGTAAACGTAAACGCTGTCTATGCCA
AGACCCAAGGCAAGCGTGTTGGGAACGCCCCTGACAGGATACCCCCAAGG
ACCAAAAAGCGCCCGCGCCAACCCGGTGACGTCCCGTCGGCGCAAGCGGC
AGTTAAGCAGGAACCTGACCAAGGGATGCCCCTCCAAAGCGAGTCCTTCG
TCTCAAGAGCCAGGAGTATTGGGGAGGAGGCGAAGTCTGATTAG
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