mRNA_Ecto-sp13_S_contig658.17410.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig658.17410.1
Unique NamemRNA_Ecto-sp13_S_contig658.17410.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig658.17410.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 1.070e-64
Identity = 224/341 (65.69%), Postives = 231/341 (67.74%), Query Frame = 2 
Query:  221 RCGRAGRPGIVVNMATPDVKFVMGKFAKSLGLPFDDCEVQGGRFWSVSTTEPXXXXXXXXXXXXXXXXXXXXXXXXRGDTRVEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSIDRGFLGDPIGESKPSAGTLEEDGVDDIDDGNVDEDIATEARAFLEGGXXXXXXXXXXXRGGAKAYGVAPFSTSPRQPEGPEDDGDAYVDAEDADEVMAEAEAFLRGERGSPDSAPAIAGSTVESSSRQKKEQSPKKTVAGGDADGVSKDSAEPVLETFEVAGGLAIVNAPEGAEDDDDFEGDFVLDGGEFDEDDWGXXXXXXXXXXXXXXXXXXXXXXXEAAQG 1243
            RCGRAGRPGIVVNMATPDVKFVMGKFAKSLGLPFDDCEVQGGRFWSVSTTEP  XXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXX       SSSIDRGFLGDPI                                                                                  DADE+MAEAEAFLRGERGSPDSAPA+AG+TVE SSRQKK+QSP K+ AGGDAD VSK++A PVLETFEVAGGLAIVN PEGAEDDDDFEGDFVL GGEFDEDDWG  XXXXXXXXXXXXXXXXXXXXXEAAQG
Sbjct: 1178 RCGRAGRPGIVVNMATPDVKFVMGKFAKSLGLPFDDCEVQGGRFWSVSTTEPPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKRAA-SSSIDRGFLGDPI----------------------------------------------------------------------------------DADEIMAEAEAFLRGERGSPDSAPAVAGATVEPSSRQKKKQSPDKSAAGGDADSVSKEAAAPVLETFEVAGGLAIVNVPEGAEDDDDFEGDFVLGGGEFDEDDWGDGXXXXXXXXXXXXXXXXXXXXXEAAQG 1435
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig658.17410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4S8_ECTSI1.070e-6465.69DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig658contigEcto-sp13_S_contig658:3009..4877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score219.9
Seed ortholog evalue1.7e-54
Seed eggNOG ortholog2880.D7G4S8
Model size1869
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0327@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-20_000520.1
Cds size987
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.4800098-UTR-Ecto-sp13_S_contig658:3008..32671681463906.4800098-UTR-Ecto-sp13_S_contig658:3008..3267Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig658 3009..3267 +
1681463906.5094078-UTR-Ecto-sp13_S_contig658:4254..48771681463906.5094078-UTR-Ecto-sp13_S_contig658:4254..4877Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig658 4255..4877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463906.490356-CDS-Ecto-sp13_S_contig658:3267..42541681463906.490356-CDS-Ecto-sp13_S_contig658:3267..4254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig658 3268..4254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig658.17410.1prot_Ecto-sp13_S_contig658.17410.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig658 3268..4254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig658.17410.1

>prot_Ecto-sp13_S_contig658.17410.1 ID=prot_Ecto-sp13_S_contig658.17410.1|Name=mRNA_Ecto-sp13_S_contig658.17410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp
MATPDVKFVMGKFAKSLGLPFDDCEVQGGRFWSVSTTEPPAASAARAAVT
AAKEGAAVVAAGARGDTRVEATATVGGGVVVADDSAEPLPLPPPPRRRTA
SSSIDRGFLGDPIGESKPSAGTLEEDGVDDIDDGNVDEDIATEARAFLEG
GGAAAAAAAAAARGGAKAYGVAPFSTSPRQPEGPEDDGDAYVDAEDADEV
MAEAEAFLRGERGSPDSAPAIAGSTVESSSRQKKEQSPKKTVAGGDADGV
SKDSAEPVLETFEVAGGLAIVNAPEGAEDDDDFEGDFVLDGGEFDEDDWG
DGDWGDGERAVGEEEDDEQEDEEEAAQG*
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mRNA from alignment at Ecto-sp13_S_contig658:3009..4877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig658.17410.1 ID=mRNA_Ecto-sp13_S_contig658.17410.1|Name=mRNA_Ecto-sp13_S_contig658.17410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1869bp|location=Sequence derived from alignment at Ecto-sp13_S_contig658:3009..4877+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATATGAATAGCTACAGCGTCTCCCCGCACAAAAGCCTCGACACTGCGTT
TTGCTTTTGGTGCTACGTGAAACCAGTCCGATTTTCCTTGATTCGATTCG
GCTCGATTAAACAACCCCCGCTGCTAAGCACACTTCCGACATAAATAATC
CCCTTCCCGTTTCATTCCGTTGGCTGACCGACACCCCTCCACCCACACAA
CAAAACAACAAAAACGAAAAAGGTGCGGGCGAGCGGGAAGACCGGGGATC
GTGGTGAACATGGCAACCCCGGACGTGAAGTTCGTCATGGGCAAGTTCGC
CAAAAGCCTTGGACTGCCGTTCGACGACTGCGAGGTCCAGGGGGGGCGTT
TCTGGTCCGTCTCTACCACGGAACCCCCCGCAGCATCGGCGGCGAGGGCG
GCGGTGACAGCGGCGAAGGAAGGGGCGGCGGTAGTAGCGGCGGGGGCGCG
TGGTGACACGCGGGTGGAGGCAACCGCTACCGTAGGGGGAGGCGTTGTCG
TCGCAGATGATTCTGCTGAGCCCCTGCCGCTGCCGCCGCCGCCACGGAGG
AGAACGGCTTCTTCTTCGATCGACAGGGGATTTTTGGGAGACCCGATCGG
TGAGTCGAAACCGTCGGCGGGAACGCTAGAAGAAGACGGCGTTGATGATA
TCGACGATGGTAATGTCGACGAAGATATCGCGACGGAAGCGAGGGCGTTT
TTGGAAGGGGGGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCACGGGG
AGGAGCGAAGGCGTACGGAGTAGCGCCGTTCTCCACCTCACCCCGACAGC
CGGAGGGTCCCGAGGACGACGGCGATGCTTACGTCGACGCTGAAGACGCT
GACGAAGTCATGGCGGAAGCCGAGGCGTTCTTGCGAGGGGAACGGGGATC
TCCGGACAGCGCACCGGCTATTGCGGGTAGTACGGTTGAGTCGTCCTCTC
GACAGAAAAAGGAGCAGTCGCCGAAGAAGACCGTTGCTGGCGGTGATGCC
GACGGCGTTAGCAAAGACTCAGCGGAACCTGTTCTTGAGACGTTTGAGGT
CGCCGGGGGTCTGGCGATCGTGAACGCGCCGGAAGGTGCGGAGGACGACG
ACGATTTCGAAGGCGATTTCGTGTTGGACGGCGGCGAGTTTGATGAGGAT
GACTGGGGGGATGGCGACTGGGGAGACGGTGAACGGGCAGTTGGCGAGGA
GGAAGATGATGAACAAGAGGACGAGGAGGAAGCGGCACAGGGATAACAAT
GATAGTAGCGTTGGTATTTCTTCTCGGAGGGACGGACGGTGGTTTTTTGC
GGGTAGTACGTCGGGTGCGTTTGTTCTTCCTTGGTTTGGTGCGCTGAGTA
TGACGAGTGTTTGATGTCGTGGGTTTGGAGTGTGTCCACCGGTGTTTGGG
TATTCATCATGTCAGTTCAGTAGAACTGCTATTGTTCATGTTCGTTCACC
CTAGACTGCTGTTTGGAAGGCATACATGTGCACAGCAGTGATGGCGTCAC
CGCAGGCGCTGTGTTTGAGAGGAGAAAAAGGAGGAACACATAGCCGGATT
GTACTCTGTCCATCCCGTCATGGCCATATGTTCTCCGTCTCTTCAGCGGA
GTTGCCGCCAGCCAGGGAGCTTTCTTTGTGTTGTGTTGCCTAAGAAGGAA
CGAACGGGAAGCAAGGAAGGCACAGAGTCTGCTTCTTTTTGTTGAGGTTG
GGGGAGATATTCGACGCGAAATACACCCAGGGATGTGTGCCCTTACATAC
TCCTTTGTGTGTGTCTCTTAGCCAAAATTCTATGAATGAGTTCCTGAGTA
TGGTGTGGGTTCATCCGCAATCTAGCTGGACGGTGTGAGTGTTTAGTTGG
TGAACAAATTGGACACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig658:3009..4877+

>mRNA_Ecto-sp13_S_contig658.17410.1 ID=mRNA_Ecto-sp13_S_contig658.17410.1|Name=mRNA_Ecto-sp13_S_contig658.17410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig658:3009..4877+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACCCCGGACGTGAAGTTCGTCATGGGCAAGTTCGCCAAAAGCCT
TGGACTGCCGTTCGACGACTGCGAGGTCCAGGGGGGGCGTTTCTGGTCCG
TCTCTACCACGGAACCCCCCGCAGCATCGGCGGCGAGGGCGGCGGTGACA
GCGGCGAAGGAAGGGGCGGCGGTAGTAGCGGCGGGGGCGCGTGGTGACAC
GCGGGTGGAGGCAACCGCTACCGTAGGGGGAGGCGTTGTCGTCGCAGATG
ATTCTGCTGAGCCCCTGCCGCTGCCGCCGCCGCCACGGAGGAGAACGGCT
TCTTCTTCGATCGACAGGGGATTTTTGGGAGACCCGATCGGTGAGTCGAA
ACCGTCGGCGGGAACGCTAGAAGAAGACGGCGTTGATGATATCGACGATG
GTAATGTCGACGAAGATATCGCGACGGAAGCGAGGGCGTTTTTGGAAGGG
GGGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCACGGGGAGGAGCGAA
GGCGTACGGAGTAGCGCCGTTCTCCACCTCACCCCGACAGCCGGAGGGTC
CCGAGGACGACGGCGATGCTTACGTCGACGCTGAAGACGCTGACGAAGTC
ATGGCGGAAGCCGAGGCGTTCTTGCGAGGGGAACGGGGATCTCCGGACAG
CGCACCGGCTATTGCGGGTAGTACGGTTGAGTCGTCCTCTCGACAGAAAA
AGGAGCAGTCGCCGAAGAAGACCGTTGCTGGCGGTGATGCCGACGGCGTT
AGCAAAGACTCAGCGGAACCTGTTCTTGAGACGTTTGAGGTCGCCGGGGG
TCTGGCGATCGTGAACGCGCCGGAAGGTGCGGAGGACGACGACGATTTCG
AAGGCGATTTCGTGTTGGACGGCGGCGAGTTTGATGAGGATGACTGGGGG
GATGGCGACTGGGGAGACGGTGAACGGGCAGTTGGCGAGGAGGAAGATGA
TGAACAAGAGGACGAGGAGGAAGCGGCACAGGGATAA
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