mRNA_Ecto-sp13_S_contig6566.17398.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6566.17398.1
Unique NamemRNA_Ecto-sp13_S_contig6566.17398.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6566.17398.1 vs. uniprot
Match: D8LKA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.670e-8
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:  436 QDFLGRWSVIPVLAVAACLWNKWRARQ 516
            +DFLGRWSVIPVLAVAACLWNKWRARQ
Sbjct:   23 KDFLGRWSVIPVLAVAACLWNKWRARQ 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6566.17398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA3_ECTSI1.670e-896.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6566contigEcto-sp13_S_contig6566:5441..5956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size516
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009520.1
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463905.305149-UTR-Ecto-sp13_S_contig6566:5440..54501681463905.305149-UTR-Ecto-sp13_S_contig6566:5440..5450Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6566 5441..5450 +
1681463905.3277755-UTR-Ecto-sp13_S_contig6566:5606..59561681463905.3277755-UTR-Ecto-sp13_S_contig6566:5606..5956Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6566 5607..5956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463905.3169053-CDS-Ecto-sp13_S_contig6566:5450..56061681463905.3169053-CDS-Ecto-sp13_S_contig6566:5450..5606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6566 5451..5606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6566.17398.1prot_Ecto-sp13_S_contig6566.17398.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6566 5451..5606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6566.17398.1

>prot_Ecto-sp13_S_contig6566.17398.1 ID=prot_Ecto-sp13_S_contig6566.17398.1|Name=mRNA_Ecto-sp13_S_contig6566.17398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MGEFGSNRAAWLIAGFLGRKFMKVGDFFSLSRASVFYTLNRFGEVFGRAR
E*
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mRNA from alignment at Ecto-sp13_S_contig6566:5441..5956+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6566.17398.1 ID=mRNA_Ecto-sp13_S_contig6566.17398.1|Name=mRNA_Ecto-sp13_S_contig6566.17398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6566:5441..5956+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAAGAGGATGGGCGAATTCGGGTCCAACCGAGCAGCATGGCTGATAG
CTGGCTTCCTAGGCCGCAAGTTCATGAAGGTAGGTGACTTCTTCTCTCTC
AGCCGCGCCTCCGTGTTCTATACTCTCAATCGATTTGGCGAAGTTTTCGG
CCGGGCGCGAGAATAGAGCGCGCGCCAGTTATGTGTTCATCTCTGTGTGT
TTGCGTTGCCAGAGAGAAGCAGGAAGCTTCACGTTGCTTCTACAACGCTG
CTGGTGTTTGCAGGAATCTTCTCGGCAGGAGTTTGGGTAGCTCTACCAGT
CCTCTGGCCGCATTGCTTTCATTCGGACACATGCTAGTGTTTCGATTCGC
TGCCGCTGCTGCTGCTGCTGTGTGTCACGTGGAGGAAAACGTGGCGTGTG
TCCTCCGTCCTCTCGTCGTTGTTGCACCTATGATTCAGGATTTCCTGGGA
CGATGGAGCGTCATCCCGGTGTTGGCCGTAGCCGCCTGCTTGTGGAACAA
GTGGAGAGCGAGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6566:5441..5956+

>mRNA_Ecto-sp13_S_contig6566.17398.1 ID=mRNA_Ecto-sp13_S_contig6566.17398.1|Name=mRNA_Ecto-sp13_S_contig6566.17398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6566:5441..5956+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGAATTCGGGTCCAACCGAGCAGCATGGCTGATAGCTGGCTTCCT
AGGCCGCAAGTTCATGAAGGTAGGTGACTTCTTCTCTCTCAGCCGCGCCT
CCGTGTTCTATACTCTCAATCGATTTGGCGAAGTTTTCGGCCGGGCGCGA
GAATAG
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