mRNA_Ecto-sp13_S_contig65639.17393.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65639.17393.1
Unique NamemRNA_Ecto-sp13_S_contig65639.17393.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65639.17393.1 vs. uniprot
Match: UPI001C07BEEB (DotG/IcmE/VirB10 family protein n=1 Tax=Acidithiobacillus ferrooxidans TaxID=920 RepID=UPI001C07BEEB)

HSP 1 Score: 68.6 bits (166), Expect = 1.870e-10
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 1 
Query:   28 AEQTKASSGTEAAMGKRGLLPGDTLIGVLNLKIDSTEPSYLEADIPVGPLKGARLLGTWVQEGDALRGEVDTITYGNHSGSIDGLVIHRKNLSPNIAESVNYHRVYRWGLLIAGGVMEGFNELL 399
            AEQ   +  T  A      L G     +L++ ++S EPS +EA I  G   GARLLG++ +E   +  + + +T+   S  I+   I  KN    +A +VN H +YR+G L AG  ++G N+ L
Sbjct:  207 AEQAMQNQSTTMA------LAGHISFAMLDIGVNSNEPSPIEATIEGGRFHGARLLGSFKREHQVVVMQFNIMTFNGQSYPINAYAISAKNARVGMATTVNNHVLYRYGWLFAGAFLQGINQAL 324
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BLAST of mRNA_Ecto-sp13_S_contig65639.17393.1 vs. uniprot
Match: UPI001CDD781C (DotG/IcmE/VirB10 family protein n=1 Tax=Acidithiobacillus ferrooxidans TaxID=920 RepID=UPI001CDD781C)

HSP 1 Score: 68.6 bits (166), Expect = 1.900e-10
Identity = 42/125 (33.60%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:   34 QTKASSGTEAAMGKRGL---LPGDTLIGVLNLKIDSTEPSYLEADIPVGPLKGARLLGTWVQEGDALRGEVDTITYGNHSGSIDGLVIHRKNLSPNIAESVNYHRVYRWGLLIAGGVMEGFNELL 399
            Q  A++  E AM  R     L G     +L++ ++S EPS +EA I  G   GARLLG++ +E   +  +   +T+   S  I+   I  KN    +A +VN H +YR+G L AG  ++G ++ L
Sbjct:  208 QPVANAAAEQAMQNRSTTMALAGHISFAMLDIGVNSNEPSPIEATIEGGRFHGARLLGSFKREHQVVVMQFSIMTFNGQSYPINAYAISAKNARVGMATTVNNHVLYRYGWLFAGAFLQGMDQAL 332
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BLAST of mRNA_Ecto-sp13_S_contig65639.17393.1 vs. uniprot
Match: UPI00188B1242 (hypothetical protein n=1 Tax=Vibrio anguillarum TaxID=55601 RepID=UPI00188B1242)

HSP 1 Score: 56.6 bits (135), Expect = 3.330e-7
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:   76 RGLLPGDTLIGVLNLKIDSTEPSYLE-ADIPVGPLKGARLLGTWVQEGDALRGEVDTITYGNHSGSIDGLVIH-RKNLSPNIAESVNYHRVYRWGLLIAGGVMEGFNE 393
            RGL  GDTL+G +   ++S  PS L   +I   PLKGA +        D    + D I +G HS  I  +V+   +NLS      V+YH +Y+ G++   GV +G  E
Sbjct:   23 RGLRVGDTLLGKVKNGLNSDTPSQLMLVEIIQPPLKGALIPFKPTLAYDNYVFQSDNINFGEHSSPITAIVVTPNENLSNGYRSDVDYHTLYKLGMIFVSGVAKGTAE 130
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BLAST of mRNA_Ecto-sp13_S_contig65639.17393.1 vs. uniprot
Match: UPI00190B701A (hypothetical protein n=1 Tax=Vibrio nigripulchritudo TaxID=28173 RepID=UPI00190B701A)

HSP 1 Score: 58.5 bits (140), Expect = 5.950e-7
Identity = 40/128 (31.25%), Postives = 62/128 (48.44%), Query Frame = 1 
Query:   76 RGLLPGDTLIGVLNLKIDSTEPS-YLEADIPVGPLKGARLLGTWVQEGDALRGEVDTITYGNHSGSIDGLVIH-RKNLSPNIAESVNYHRVYRWGLLIAGGVMEGFNELLTNNVQNSRTAFQDDQVIQ 453
            RGLL GD L+G +   ++S  PS Y+   +   PLKGA+++       D        +T+G+    I  +++    NLS      VNYH +Y+ G++   G+M+G  E +  N      A   D VIQ
Sbjct:  276 RGLLIGDMLLGEVINGLNSNSPSPYMLVRVLQEPLKGAKIMFEPSLHYDNYLFASKAVTFGHEQSEISAIIVTPNSNLSTGYRSKVNYHELYKLGVIAFHGIMKGGAEYI--NSLGGSVAINGDTVIQ 401
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BLAST of mRNA_Ecto-sp13_S_contig65639.17393.1 vs. uniprot
Match: UPI0018C30E21 (hypothetical protein n=4 Tax=Vibrio anguillarum TaxID=55601 RepID=UPI0018C30E21)

HSP 1 Score: 56.6 bits (135), Expect = 2.730e-6
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:   76 RGLLPGDTLIGVLNLKIDSTEPSYLE-ADIPVGPLKGARLLGTWVQEGDALRGEVDTITYGNHSGSIDGLVIH-RKNLSPNIAESVNYHRVYRWGLLIAGGVMEGFNE 393
            RGL  GDTL+G +   ++S  PS L   +I   PLKGA +        D    + D I +G HS  I  +V+   +NLS      V+YH +Y+ G++   GV +G  E
Sbjct:  266 RGLRVGDTLLGKVKNGLNSDTPSQLMLVEIIQPPLKGALIPFKPTLAYDNYVFQSDNINFGEHSSPITAIVVTPNENLSNGYRSDVDYHTLYKLGMIFVSGVAKGTAE 373
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65639.17393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001C07BEEB1.870e-1033.87DotG/IcmE/VirB10 family protein n=1 Tax=Acidithiob... [more]
UPI001CDD781C1.900e-1033.60DotG/IcmE/VirB10 family protein n=1 Tax=Acidithiob... [more]
UPI00188B12423.330e-735.19hypothetical protein n=1 Tax=Vibrio anguillarum Ta... [more]
UPI00190B701A5.950e-731.25hypothetical protein n=1 Tax=Vibrio nigripulchritu... [more]
UPI0018C30E212.730e-635.19hypothetical protein n=4 Tax=Vibrio anguillarum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65639contigEcto-sp13_S_contig65639:228..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score63.9
Seed ortholog evalue8.1e-08
Seed eggNOG ortholog637390.AFOH01000040_gene2333
Preferred nameicmE
Model size510
KEGG koko:K12209
KEGG TC3.A.7.9.1
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Bacterial conjugation TrbI-like protein
EggNOG OGs1N3WV@1224,1S91W@1236,2NDST@225057,COG2948@1,COG2948@2
Cds size510
COG Functional cat.U
Best tax levelAcidithiobacillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463904.8220222-CDS-Ecto-sp13_S_contig65639:227..7371681463904.8220222-CDS-Ecto-sp13_S_contig65639:227..737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65639 228..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65639.17393.1prot_Ecto-sp13_S_contig65639.17393.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65639 228..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65639.17393.1

>prot_Ecto-sp13_S_contig65639.17393.1 ID=prot_Ecto-sp13_S_contig65639.17393.1|Name=mRNA_Ecto-sp13_S_contig65639.17393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MEERFAARNAEQTKASSGTEAAMGKRGLLPGDTLIGVLNLKIDSTEPSYL
EADIPVGPLKGARLLGTWVQEGDALRGEVDTITYGNHSGSIDGLVIHRKN
LSPNIAESVNYHRVYRWGLLIAGGVMEGFNELLTNNVQNSRTAFQDDQVI
QEVDGLTTQQIILGALTKPG
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mRNA from alignment at Ecto-sp13_S_contig65639:228..737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65639.17393.1 ID=mRNA_Ecto-sp13_S_contig65639.17393.1|Name=mRNA_Ecto-sp13_S_contig65639.17393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65639:228..737+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGCGGTTTGCGGCCCGGAACGCAGAGCAAACGAAGGCGTCGTC
CGGGACAGAAGCTGCAATGGGGAAGAGGGGGCTGCTGCCAGGGGATACGC
TCATTGGGGTTTTGAACCTCAAGATCGATTCGACGGAGCCATCCTACCTG
GAGGCGGATATCCCGGTTGGTCCATTGAAAGGTGCCCGACTTCTGGGGAC
CTGGGTGCAAGAGGGTGATGCATTGCGAGGTGAGGTGGACACTATCACTT
ATGGCAACCACTCGGGCTCAATTGATGGCCTGGTCATCCATCGAAAGAAT
CTGTCACCTAACATCGCGGAAAGCGTCAATTACCATCGGGTCTACCGCTG
GGGGCTTCTGATTGCCGGCGGTGTTATGGAAGGCTTTAATGAGCTGCTTA
CAAACAACGTTCAGAACAGCAGAACGGCCTTTCAGGACGATCAGGTAATT
CAGGAAGTTGACGGCCTTACAACTCAACAAATTATTCTTGGGGCGCTCAC
AAAGCCAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65639:228..737+

>mRNA_Ecto-sp13_S_contig65639.17393.1 ID=mRNA_Ecto-sp13_S_contig65639.17393.1|Name=mRNA_Ecto-sp13_S_contig65639.17393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65639:228..737+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGCGGTTTGCGGCCCGGAACGCAGAGCAAACGAAGGCGTCGTC
CGGGACAGAAGCTGCAATGGGGAAGAGGGGGCTGCTGCCAGGGGATACGC
TCATTGGGGTTTTGAACCTCAAGATCGATTCGACGGAGCCATCCTACCTG
GAGGCGGATATCCCGGTTGGTCCATTGAAAGGTGCCCGACTTCTGGGGAC
CTGGGTGCAAGAGGGTGATGCATTGCGAGGTGAGGTGGACACTATCACTT
ATGGCAACCACTCGGGCTCAATTGATGGCCTGGTCATCCATCGAAAGAAT
CTGTCACCTAACATCGCGGAAAGCGTCAATTACCATCGGGTCTACCGCTG
GGGGCTTCTGATTGCCGGCGGTGTTATGGAAGGCTTTAATGAGCTGCTTA
CAAACAACGTTCAGAACAGCAGAACGGCCTTTCAGGACGATCAGGTAATT
CAGGAAGTTGACGGCCTTACAACTCAACAAATTATTCTTGGGGCGCTCAC
AAAGCCAGGC
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