mRNA_Ecto-sp13_S_contig65575.17383.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65575.17383.1
Unique NamemRNA_Ecto-sp13_S_contig65575.17383.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: D7FUM0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUM0_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 4.430e-30
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 QVTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            +VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHR+LLWDQFHSVPYPPAYFPRDYL
Sbjct:  800 EVTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRRLLWDQFHSVPYPPAYFPRDYL 857
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: A0A6H5K166_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K166_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.750e-27
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 QVTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            +V VES AGPGETQPRTTNAVLPVTVSVIR PPRHR+LLWDQFHSVPYPPAY PRDYL
Sbjct: 1075 EVAVESVAGPGETQPRTTNAVLPVTVSVIRPPPRHRRLLWDQFHSVPYPPAYIPRDYL 1132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: A0A3R7Q9G7_PENVA (Membrane-bound transcription factor site-1 protease n=4 Tax=Penaeus TaxID=133894 RepID=A0A3R7Q9G7_PENVA)

HSP 1 Score: 80.1 bits (196), Expect = 3.760e-16
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            VTVES    GETQPRT++  LPV   VI TPPRH+++LWDQFH++ YPP YFPRD L
Sbjct:  807 VTVESPPEEGETQPRTSHVKLPVKAKVIPTPPRHKRVLWDQFHNLRYPPGYFPRDNL 863
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: A0A653C4W7_CALMS (Uncharacterized protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653C4W7_CALMS)

HSP 1 Score: 79.3 bits (194), Expect = 6.680e-16
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            VTVES  GPGE QPR +   LP+   +I TPPRH+++LWDQ+H++ YPP YFPRD L
Sbjct:   89 VTVESPPGPGEQQPRRSTVNLPIRAKIIPTPPRHKRILWDQYHNLRYPPGYFPRDNL 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: A0A0T6B9G1_9SCAR (Peptidase (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6B9G1_9SCAR)

HSP 1 Score: 78.6 bits (192), Expect = 1.310e-15
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            +T+ES    GET+PR +  +LPV V +I TPPRH++LLWDQ+H++ YPP YFPRD L
Sbjct:  574 LTIESPPASGETEPRQSTVILPVRVKIIPTPPRHKRLLWDQYHNLRYPPGYFPRDNL 630
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: A0A8J5MXD5_HOMAM (Membrane-bound transcription factor site-1 protease-like n=2 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MXD5_HOMAM)

HSP 1 Score: 78.6 bits (192), Expect = 1.310e-15
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            VT+ES    GETQPRT++  LPV   +I TPPRH+++LWDQFH++ YPP YFPRD L
Sbjct:  832 VTIESPPEEGETQPRTSHVKLPVKAKMIPTPPRHKRVLWDQFHNLRYPPGYFPRDNL 888
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: UPI001E672AF1 (membrane-bound transcription factor site-1 protease-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672AF1)

HSP 1 Score: 78.6 bits (192), Expect = 1.310e-15
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            VT+ES    GETQPRT++  LPV   +I TPPRH+++LWDQFH++ YPP YFPRD L
Sbjct:  814 VTIESPPEEGETQPRTSHVKLPVKAKMIPTPPRHKRVLWDQFHNLRYPPGYFPRDNL 870
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: A0A6M2DX95_9NEOP (Putative membrane-bound transcription factor site-1 protease isoform x2 (Fragment) n=1 Tax=Xenopsylla cheopis TaxID=163159 RepID=A0A6M2DX95_9NEOP)

HSP 1 Score: 78.2 bits (191), Expect = 1.790e-15
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            +TV+S  G GE  PR ++  LPVT +VI TPPRH+++LWDQFHS+ YPP YFPRD L
Sbjct:  631 LTVQSPPGAGEKLPRNSSITLPVTANVIPTPPRHKRVLWDQFHSLRYPPGYFPRDNL 687
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: UPI001E275FD6 (membrane-bound transcription factor site-1 protease n=2 Tax=Coccinellini TaxID=263631 RepID=UPI001E275FD6)

HSP 1 Score: 77.4 bits (189), Expect = 3.340e-15
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            +TVES AG GE +PR +   LP+   +I TPPRH+++LWDQ+H++ YPP YFPRD L
Sbjct:  573 LTVESPAGSGEVEPRRSTVTLPIKAKIIPTPPRHKRILWDQYHNLRYPPGYFPRDNL 629
[Close]
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Match: UPI00096B38DE (membrane-bound transcription factor site-1 protease isoform X1 n=2 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B38DE)

HSP 1 Score: 77.4 bits (189), Expect = 3.340e-15
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 VTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPPAYFPRDYL 174
            +T+ES  GPGET+PR ++  L +   +++TPPRH+++LWDQ+H++ YPP YFPRD L
Sbjct:  573 LTIESPPGPGETEPRQSSVQLAIKAKIVQTPPRHKRILWDQYHNLRYPPGYFPRDNL 629
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65575.17383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUM0_ECTSI4.430e-3096.55Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K166_9PHAE7.750e-2789.66Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A3R7Q9G7_PENVA3.760e-1664.91Membrane-bound transcription factor site-1 proteas... [more]
A0A653C4W7_CALMS6.680e-1659.65Uncharacterized protein n=1 Tax=Callosobruchus mac... [more]
A0A0T6B9G1_9SCAR1.310e-1557.89Peptidase (Fragment) n=1 Tax=Oryctes borbonicus Ta... [more]
A0A8J5MXD5_HOMAM1.310e-1561.40Membrane-bound transcription factor site-1 proteas... [more]
UPI001E672AF11.310e-1561.40membrane-bound transcription factor site-1 proteas... [more]
A0A6M2DX95_9NEOP1.790e-1561.40Putative membrane-bound transcription factor site-... [more]
UPI001E275FD63.340e-1556.14membrane-bound transcription factor site-1 proteas... [more]
UPI00096B38DE3.340e-1552.63membrane-bound transcription factor site-1 proteas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65575contigEcto-sp13_S_contig65575:67..240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.8
Seed ortholog evalue4.3e-25
Seed eggNOG ortholog2880.D7FUM0
Preferred nameMBTPS1
Model size174
KEGG koko:K08653
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005794,GO:0005795,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006606,GO:0006629,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0006972,GO:0006984,GO:0006986,GO:0006991,GO:0006996,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008237,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0017038,GO:0017171,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0019538,GO:0023052,GO:0030968,GO:0031090,GO:0031293,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031984,GO:0032933,GO:0033036,GO:0033365,GO:0033554,GO:0033619,GO:0034504,GO:0034613,GO:0034620,GO:0034976,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0036500,GO:0042175,GO:0042221,GO:0042538,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045540,GO:0045893,GO:0045935,GO:0045944,GO:0046890,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0062012,GO:0065007,GO:0070011,GO:0070013,GO:0070727,GO:0070887,GO:0071310,GO:0071501,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0080171,GO:0090181,GO:0098588,GO:0098791,GO:0098827,GO:0106118,GO:0140096,GO:1901564,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG1404@1,KOG4266@2759
EC3.4.21.112
Cds size174
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463904.0008795-CDS-Ecto-sp13_S_contig65575:66..2401681463904.0008795-CDS-Ecto-sp13_S_contig65575:66..240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65575 67..240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65575.17383.1prot_Ecto-sp13_S_contig65575.17383.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65575 67..240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65575.17383.1

>prot_Ecto-sp13_S_contig65575.17383.1 ID=prot_Ecto-sp13_S_contig65575.17383.1|Name=mRNA_Ecto-sp13_S_contig65575.17383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
QVTVESEAGPGETQPRTTNAVLPVTVSVIRTPPRHRKLLWDQFHSVPYPP
AYFPRDYL
back to top

mRNA from alignment at Ecto-sp13_S_contig65575:67..240-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65575.17383.1 ID=mRNA_Ecto-sp13_S_contig65575.17383.1|Name=mRNA_Ecto-sp13_S_contig65575.17383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65575:67..240- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACGGTGGAATCAGAGGCGGGGCCGGGAGAGACGCAACCCCGTAC
CACGAACGCCGTCCTGCCGGTAACGGTTAGCGTTATCCGCACGCCGCCCA
GGCACCGCAAGCTGCTCTGGGACCAGTTCCACAGCGTCCCGTACCCTCCG
GCCTACTTTCCGAGGGACTACCTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65575:67..240-

>mRNA_Ecto-sp13_S_contig65575.17383.1 ID=mRNA_Ecto-sp13_S_contig65575.17383.1|Name=mRNA_Ecto-sp13_S_contig65575.17383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65575:67..240- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACGGTGGAATCAGAGGCGGGGCCGGGAGAGACGCAACCCCGTAC
CACGAACGCCGTCCTGCCGGTAACGGTTAGCGTTATCCGCACGCCGCCCA
GGCACCGCAAGCTGCTCTGGGACCAGTTCCACAGCGTCCCGTACCCTCCG
GCCTACTTTCCGAGGGACTACCTA
back to top