mRNA_Ecto-sp13_S_contig6556.17381.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6556.17381.1
Unique NamemRNA_Ecto-sp13_S_contig6556.17381.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A6H5K6R3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6R3_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 4.330e-138
Identity = 208/227 (91.63%), Postives = 211/227 (92.95%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELQKKQAGGKGFHTSAACFSALQPGTGEPASDPLPRTLFSASDDGELTDGIATRRPSSGASQYPSLETRPLSFWWGTGTERETHRNGEAFSTTAIGPDELGSGIALDLSRMSLTGRSAGEQQARSPLRAVLASHLSLLGPAACSVIGLRVDAEEEARDTR 681
            VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELQKKQAGGKGFHTSAACF+ALQPG GEPASD  PRTLFSASDDGEL+DGIATRRPSS  SQ P LET PLS WWGTG ERETHRNGEA STTA GPDELG GIALDLSRMSLT RSAG+QQA SPLRAVLASHLSLLGPAACSVIGL VDAEEEARDTR
Sbjct:   37 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELQKKQAGGKGFHTSAACFNALQPGAGEPASDSPPRTLFSASDDGELSDGIATRRPSSAVSQSPPLETGPLSSWWGTGAERETHRNGEAVSTTASGPDELGGGIALDLSRMSLTERSAGDQQAWSPLRAVLASHLSLLGPAACSVIGLLVDAEEEARDTR 263
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A7S2KAU0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAU0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.450e-18
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWK 201
            +GTYNP+A + G+KEV  K DR +YW+SVGAQPSDRV WLLG+FGILPP  VP  R ++++P++E K
Sbjct:   49 LGTYNPIANKDGIKEVRLKSDRFKYWLSVGAQPSDRVGWLLGKFGILPPPPVP-HRPQRSIPKEERK 114
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A6U0J4Z2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0J4Z2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.010e-18
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKE 195
            VGTYNP+A  +G+KE+  K DR+RYW+SVGAQPSDRVAW+LG+FG+LPP   P    ++ VPRK+
Sbjct:   37 VGTYNPIANSAGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGVLPPPP-PRYSVEKMVPRKD 100
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: B8BU89_THAPS (RT16, ribosomal protein 16 mitochondrial small ribosomal subunit (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8BU89_THAPS)

HSP 1 Score: 89.7 bits (221), Expect = 2.300e-18
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPP 147
            VGTYNP+A  +G+KE+  K DR+RYWISVGAQPSDRVAW+LG+FGILPP
Sbjct:   37 VGTYNPIANNAGIKEIRLKADRLRYWISVGAQPSDRVAWILGKFGILPP 85
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A7S1VML7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VML7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.770e-18
Identity = 36/49 (73.47%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPP 147
            +GTYNP+ATR+G+KE+  K DRI+YW+SVGAQPSDRV+W+LG+FGILPP
Sbjct:   37 IGTYNPIATRAGLKEIRLKTDRIKYWLSVGAQPSDRVSWILGKFGILPP 85
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A7S1ZG56_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG56_TRICV)

HSP 1 Score: 90.1 bits (222), Expect = 2.770e-18
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKE 195
            VGTYNP+A  SG+KE+  K DR+RYW+SVGAQPSDRVAW+LG+FGILPP   P    ++ +P+K+
Sbjct:   37 VGTYNPIANASGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGILPPPP-PRYSPQRMIPKKD 100
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A7S4NGP0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGP0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.800e-18
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELQK 213
            +GTYNP+A + G+KE+  K DR++YW+SVGAQPSDRVAW+LG+FGILPP   P    ++ +P+K+ +E +K
Sbjct:   37 LGTYNPMANKHGIKEIRLKTDRLKYWVSVGAQPSDRVAWVLGKFGILPPPP-PRYSPQRMIPKKDREEQEK 106
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A7R9W8Z9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8Z9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.060e-18
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKE 204
            VGTYNP+A + G+KE+  K DR++YW+SVGAQPSDRVAW+LG+FGILPP   P    +  +P+K+ +E
Sbjct:   35 VGTYNPIANKHGIKEIRLKTDRLKYWLSVGAQPSDRVAWILGKFGILPPPP-PRYSPQNMIPKKDREE 101
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A1Z5K548_FISSO (Small subunit ribosomal protein S16 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K548_FISSO)

HSP 1 Score: 88.6 bits (218), Expect = 9.580e-18
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPP 147
            VGTYNP+A R GVKE+  K DR++YW+SVGAQPSDRV+W+LG+FGILPP
Sbjct:   37 VGTYNPIANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPP 85
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BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Match: A0A7S3PWJ7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWJ7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.280e-17
Identity = 37/65 (56.92%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKE 195
            VGTYNP+AT+ G+KE+  K DR++YW+ VGAQPSDRV+W+LG+FG+LPP    V+  K  +P+K+
Sbjct:   37 VGTYNPIATKEGIKEIRLKTDRLKYWLGVGAQPSDRVSWILGKFGVLPPPPPRVSLQKM-IPKKD 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6556.17381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6R3_9PHAE4.330e-13891.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2KAU0_9STRA1.450e-1861.19Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6U0J4Z2_9STRA2.010e-1861.54Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B8BU89_THAPS2.300e-1875.51RT16, ribosomal protein 16 mitochondrial small rib... [more]
A0A7S1VML7_9STRA2.770e-1873.47Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1ZG56_TRICV2.770e-1861.54Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4NGP0_9STRA3.800e-1854.93Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9W8Z9_9STRA9.060e-1857.35Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5K548_FISSO9.580e-1873.47Small subunit ribosomal protein S16 n=2 Tax=Fistul... [more]
A0A7S3PWJ7_9STRA1.280e-1756.92Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6556contigEcto-sp13_S_contig6556:481..2390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score414.1
Seed ortholog evalue4.3e-113
Seed eggNOG ortholog2880.D8LTT8
Model size1389
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000313,GO:0000314,GO:0003006,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0019866,GO:0019904,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
EggNOG free text desc.ribosomal protein s16
EggNOG OGsCOG0228@1,KOG3419@2759
Ec32 ortholog descriptionRibosomal protein S16 domain
Ec32 orthologEc-28_002810.1
Cds size684
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463903.8666303-CDS-Ecto-sp13_S_contig6556:480..6091681463903.8666303-CDS-Ecto-sp13_S_contig6556:480..609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6556 481..609 +
1681463903.880293-CDS-Ecto-sp13_S_contig6556:1131..16861681463903.880293-CDS-Ecto-sp13_S_contig6556:1131..1686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6556 1132..1686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463903.8942196-UTR-Ecto-sp13_S_contig6556:1686..23901681463903.8942196-UTR-Ecto-sp13_S_contig6556:1686..2390Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6556 1687..2390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6556.17381.1prot_Ecto-sp13_S_contig6556.17381.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6556 481..1686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6556.17381.1

>prot_Ecto-sp13_S_contig6556.17381.1 ID=prot_Ecto-sp13_S_contig6556.17381.1|Name=mRNA_Ecto-sp13_S_contig6556.17381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
VGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPK
VVPVARTKQTVPRKEWKELQKKQAGGKGFHTSAACFSALQPGTGEPASDP
LPRTLFSASDDGELTDGIATRRPSSGASQYPSLETRPLSFWWGTGTERET
HRNGEAFSTTAIGPDELGSGIALDLSRMSLTGRSAGEQQARSPLRAVLAS
HLSLLGPAACSVIGLRVDAEEEARDTR*
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mRNA from alignment at Ecto-sp13_S_contig6556:481..2390+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6556.17381.1 ID=mRNA_Ecto-sp13_S_contig6556.17381.1|Name=mRNA_Ecto-sp13_S_contig6556.17381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1910bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6556:481..2390+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGCACCTACAACCCGCTCGCTACCCGCAGCGGTGTGAAGGAGGTCAC
GTTCAAGGTGGACAGGATACGCTACTGGATCTCGGTCGGTGCTCAGCCGA
GCGACAGGGTGGCGTGGCTTCTGGGGCAGGTGAGGTGCAGCAGCGGTTGT
ATCTTTGTTGGTAGGTGGTTGTTGCCTTCATGTGAAAATGTCGCAGCTCT
CATTTTTTCTCCTGCAAGCTGGTTTACGGTGGTGGGAGAATTGTTGTGAA
GTGTCCTCGTGTTGTTGCAGCCGTCCTCTTGAGGCGAACAGCGCCAACTG
CGTGATGTATTGTCTCGCGCCCAATATCGAACTGCTCTGGCGAGCAATAG
CTTGATGGCGTTCCGCTACTGGCCTATGTGTACAGCATTGGGACCCTCAC
TCGGGCTTACGTCATCCCGTCTTGCATCGTGCCTGCCTACCCTCCCTGCA
CGGCCTGTCTAGTATCTACTCGCTGAACGCAACTGGAACTTCGTAATGCC
CGTGGACCTAAGCGTATCCCGCATGTTTCTCGCCACGCTTCACCCTGCTT
TCTCCGCCTTGATTCACTCCACAAACATCCACATATGTTCCCTGTTCCAC
CGCGCGCACATCCGACTACGTTCGACTTTTCGCCTTTCCCTCCGACCCCA
GTTCGGCATACTGCCGCCCAAAGTTGTCCCCGTAGCACGGACGAAGCAAA
CAGTACCCAGGAAGGAGTGGAAGGAGCTCCAGAAGAAGCAGGCTGGGGGC
AAAGGTTTCCACACGTCGGCGGCGTGTTTCAGCGCTCTCCAACCCGGGAC
TGGCGAGCCAGCTAGTGACCCCCTCCCACGGACTCTCTTTTCGGCCAGCG
ACGACGGCGAACTAACCGACGGAATCGCGACGCGGCGACCGTCGAGTGGT
GCGTCCCAGTATCCGTCACTTGAGACGAGACCTTTGTCCTTCTGGTGGGG
AACGGGAACAGAGAGAGAAACACACCGCAACGGCGAGGCCTTTAGCACGA
CGGCCATCGGGCCGGATGAGCTCGGCAGTGGCATCGCTCTTGATTTGTCT
CGAATGTCGCTGACTGGACGCAGCGCGGGGGAGCAGCAAGCGCGGTCGCC
GCTCCGCGCCGTTCTTGCTTCGCACCTCAGCCTTCTCGGCCCTGCCGCCT
GCTCCGTGATTGGTCTACGGGTGGACGCGGAGGAGGAGGCGCGGGATACA
CGGTGACAACGCGACGGAGAGAGGGCTTTGTCCGAAGGCTCGGTTGGAGA
GATGCATCTTTCTTTTGGGCGTCGCAATCTGCTGGAGAGCTGGCCTTGCG
GTGGGAGGGAGCGGGGCGTGGGTGGACTCAGAGTCGCTTACGTCAATTGG
CCACGCACAGCATTATCCCAAAGGGTGCATGCGCATAGGGACTTACTCTC
CTGCGAATATACGGTTGGATGGAGTGGGCAACTATCCTTGGACACACGTG
CGTGTTTCCTTTTTTTGAACTACGTTCGAGGAGGGGCTGACGAAAGCCTC
GGGGGCGGCGGTTGAAGTTTTCCAAGGGTGGTAATATTAGTACTTGACTG
GTTTGAATTGTTCGCCTGCTGCTGCTGCTGCTGCTACCCCTCGTTCGCGG
GATGACATCAGCAGCCGCCGATGGTGCGAACGGTGTGAATGAAACGTCTG
GGCGAAATGCCATGAGGGTCAGTAGGAGACGGCAGGTTACGCATATTCTT
TTGCGTTTTGCGGAGAAAGAAACATTTCCCGCCAAGAACAGAACAAGTGA
AATGTTTCGCGACGGTCTCCGCGGGGAGCTCCTCGTCCATATCTGTTCCT
TTACAAGTTCTCCTTGCATTGGCTCGCCCTTTCCCGGCACCCCTCCGAAC
GTTTGGGTGCGGCTGCAAGTACTCAGTGGGGTGGATTTTTTCGTTTCTTC
TCGACGTCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6556:481..2390+

>mRNA_Ecto-sp13_S_contig6556.17381.1 ID=mRNA_Ecto-sp13_S_contig6556.17381.1|Name=mRNA_Ecto-sp13_S_contig6556.17381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6556:481..2390+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGCACCTACAACCCGCTCGCTACCCGCAGCGGTGTGAAGGAGGTCAC
GTTCAAGGTGGACAGGATACGCTACTGGATCTCGGTCGGTGCTCAGCCGA
GCGACAGGGTGGCGTGGCTTCTGGGGCAGTTCGGCATACTGCCGCCCAAA
GTTGTCCCCGTAGCACGGACGAAGCAAACAGTACCCAGGAAGGAGTGGAA
GGAGCTCCAGAAGAAGCAGGCTGGGGGCAAAGGTTTCCACACGTCGGCGG
CGTGTTTCAGCGCTCTCCAACCCGGGACTGGCGAGCCAGCTAGTGACCCC
CTCCCACGGACTCTCTTTTCGGCCAGCGACGACGGCGAACTAACCGACGG
AATCGCGACGCGGCGACCGTCGAGTGGTGCGTCCCAGTATCCGTCACTTG
AGACGAGACCTTTGTCCTTCTGGTGGGGAACGGGAACAGAGAGAGAAACA
CACCGCAACGGCGAGGCCTTTAGCACGACGGCCATCGGGCCGGATGAGCT
CGGCAGTGGCATCGCTCTTGATTTGTCTCGAATGTCGCTGACTGGACGCA
GCGCGGGGGAGCAGCAAGCGCGGTCGCCGCTCCGCGCCGTTCTTGCTTCG
CACCTCAGCCTTCTCGGCCCTGCCGCCTGCTCCGTGATTGGTCTACGGGT
GGACGCGGAGGAGGAGGCGCGGGATACACGGTGA
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