mRNA_Ecto-sp13_S_contig6553.17378.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: D7G0H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H8_ECTSI) HSP 1 Score: 603 bits (1554), Expect = 2.980e-215 Identity = 312/345 (90.43%), Postives = 318/345 (92.17%), Query Frame = 1
Query: 70 MNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEAGADPKASTPEGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEHGRPSQEEESFNFAGLSTVTNLGGGTLMGMRDGGVTMSTTQVTTSDGTVNVS 1104
MNPRELVN+REEQGFTALHIAVMMGA DCARKLL+AGADPKASTPEGATPI MAAQGTG+PGAPELQEGG QTERD+VVGTVPLHTA+YSGRLEVF TLLAGPGGEVAVNTKDSQGATPLHSACRA GA GPVAAMALL+EGCPVAVDVSVRDDSGRTPLFDAAHHGH EVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLEL NNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEHGRPSQEEESFNF GLS VTNLGGGTLMGMRDGGV MSTTQ TT DGTV VS
Sbjct: 1 MNPRELVNRREEQGFTALHIAVMMGAADCARKLLDAGADPKASTPEGATPITMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDKVVGTVPLHTAVYSGRLEVFNTLLAGPGGEVAVNTKDSQGATPLHSACRAKGAAGPVAAMALLEEGCPVAVDVSVRDDSGRTPLFDAAHHGHAEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEHGRPSQEEESFNFDGLSMVTNLGGGTLMGMRDGGVNMSTTQETTPDGTVEVS 345
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A6H5KW25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW25_9PHAE) HSP 1 Score: 141 bits (355), Expect = 5.300e-38 Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 625 KLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDL 876
+LLLAAGSDPSLQDSSGLS +SAT WLGKEACLD ILGTERGL TLEL NNLGATPLIFACQENNK IAK LIAAGASLDAKDL
Sbjct: 6 QLLLAAGSDPSLQDSSGLSSVSATTWLGKEACLDPILGTERGLTTLELTNNLGATPLIFACQENNKGIAK-LIAAGASLDAKDL 88
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A818KRB4_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818KRB4_9BILA) HSP 1 Score: 97.1 bits (240), Expect = 1.430e-18 Identity = 88/313 (28.12%), Postives = 143/313 (45.69%), Query Frame = 1
Query: 10 LVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEA-GADPKASTPEGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTE 945
L +AC + + E++ L++ N +N+ EQG TALH DCAR LLE + EG + + +A G V++ + GAD T D + ++ +H G L++F L+ E V+T D GA P+H A + G P ++A+L + VDV+ D+ RTP AA + +++L AG++P D L+ L A G +C+ ++ E ++E + G TPL +A + + + L+ A+ + KD G+TP A + CLK L E
Sbjct: 6 LFEACQKVDIEQIKYLIEQKYN----INQLNEQGRTALHYCCDHQNIDCARLLLEYDNSIINIKDNEGFSALHLACLN------------GNYIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHLDLFDILVQY---EAPVHTSDIYGAFPIHYASQLCGNNDPAKSLAILKKLIDNNVDVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHTDKDSLTALHCAATCGHTSCIRMLI--ELYGCSIESEDINGCTPLFYAITLEHSNACRVLLDLKANSNHKDNRGRTPSHCAALKGNINCLKHLIE 296
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A821BSN6_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821BSN6_9BILA) HSP 1 Score: 97.1 bits (240), Expect = 4.070e-18 Identity = 88/313 (28.12%), Postives = 143/313 (45.69%), Query Frame = 1
Query: 10 LVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEA-GADPKASTPEGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTE 945
L +AC + + E++ L++ N +N+ EQG TALH DCAR LLE + EG + + +A G V++ + GAD T D + ++ +H G L++F L+ E V+T D GA P+H A + G P ++A+L + VDV+ D+ RTP AA + +++L AG++P D L+ L A G +C+ ++ E ++E + G TPL +A + + + L+ A+ + KD G+TP A + CLK L E
Sbjct: 6 LFEACQKVDIEQIKYLIEQKYN----INQLNEQGRTALHYCCDHQNIDCARLLLEYDNSIINIKDNEGFSALHLACLN------------GNYIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHLDLFDILVQY---EAPVHTSDIYGAFPIHYASQLCGNNDPAKSLAILKKLIDNNVDVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHTDKDSLTALHCAATCGHTSCIRMLI--ELYGCSIESEDINGCTPLFYAITLEHSNACRVLLDLKANSNHKDNRGRTPSHCAALKGNINCLKHLIE 296
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A819CPQ1_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819CPQ1_9BILA) HSP 1 Score: 95.5 bits (236), Expect = 1.520e-17 Identity = 87/313 (27.80%), Postives = 142/313 (45.37%), Query Frame = 1
Query: 10 LVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEA-GADPKASTPEGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTE 945
L +AC + + E++ L++ N +N+ EQG TALH DCAR LLE + EG + + +A G V++ + GAD T D + ++ +H G L++F L+ E V+T D GA P+H A + G P ++A+L + DV+ D+ RTP AA + +++L AG++P D L+ L A G +C+ ++ E ++E + G TPL +A + + + L+ A+ + KD G+TP A + CLK L E
Sbjct: 6 LFEACQKVDIEQIKYLIEQKYN----INQLNEQGRTALHYCCDHQNIDCARLLLEYDNSIINIKDNEGFSALHLACLN------------GNYIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHLDLFDILVQY---EAPVHTSDIYGAFPIHYASQLCGNNDPAKSLAILKKLIDNNADVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHTDKDSLTALHCAATCGHTSCIRMLI--ELYGCSIESEDINGCTPLFYAITLEHSNACRVLLDLKANSNHKDNRGRTPSHCAALKGNINCLKHLIE 296
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A818QJB4_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A818QJB4_9BILA) HSP 1 Score: 94.0 bits (232), Expect = 1.580e-17 Identity = 85/315 (26.98%), Postives = 142/315 (45.08%), Query Frame = 1
Query: 10 LVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEAGADP-KASTPEGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEH 951
L +AC + + E++ L++ N +NK EQG TALH DCAR LLE EG + + +A G V++ + GAD T D + ++ +H G +++F L+ + ++T D GA P+H A + G P+ + +L + DV+ D+ RTP AA + +++L AG++P D L+ L A G +C+ ++ E +LE + G TPL +A + ++ + L+ A+ + KD G+TP A + CLK L E +
Sbjct: 3 LFEACQKVDIEQVKYLIEQNFN----INKLNEQGRTALHYCCDHENIDCARLLLENDKSIINIKDNEGFSALHLACLN------------GNLIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHVDLFDILVQY---QTPIHTSDIYGAFPIHYASQLCGNNDPIKNLTILKKLIDNNADVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHADKDSLTALHCAATCGHLSCIRMLI--ELYGCSLESEDINGCTPLYYAITFEHLNVCRVLLHLKANPNHKDHRGRTPSHCAALKGNINCLKCLIEHN 295
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A816A672_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816A672_9BILA) HSP 1 Score: 95.5 bits (236), Expect = 1.680e-17 Identity = 87/313 (27.80%), Postives = 142/313 (45.37%), Query Frame = 1
Query: 10 LVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEA-GADPKASTPEGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTE 945
L +AC + + E++ L++ N +N+ EQG TALH DCAR LLE + EG + + +A G V++ + GAD T D + ++ +H G L++F L+ E V+T D GA P+H A + G P ++A+L + DV+ D+ RTP AA + +++L AG++P D L+ L A G +C+ ++ E ++E + G TPL +A + + + L+ A+ + KD G+TP A + CLK L E
Sbjct: 6 LFEACQKVDIEQIKYLIEQKYN----INQLNEQGRTALHYCCDHQNIDCARLLLEYDNSIINIKDNEGFSALHLACLN------------GNYIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHLDLFDILVQY---EAPVHTSDIYGAFPIHYASQLCGNNDPAKSLAILKKLIDNNADVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHTDKDSLTALHCAATCGHTSCIRMLI--ELYGCSIESEDINGCTPLFYAITLEHSNACRVLLDLKANSNHKDNRGRTPSHCAALKGNINCLKHLIE 296
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A814WKQ2_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814WKQ2_ADIRI) HSP 1 Score: 87.0 bits (214), Expect = 8.000e-15 Identity = 88/325 (27.08%), Postives = 141/325 (43.38%), Query Frame = 1
Query: 1 MQRLVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEAGADPKASTP----EGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNL------GATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTE 945
M L +AC + + ER+ SL++ + ++ ++QG T LH CA+ +L+ + K EG + + +A G V++L + GA+ D TV +H G L +F L+ V+T D GA P+H A + G G + +A+L + VDV+ D+ RTP AA G + ++LL AG++P D L+ L A G C+ ++ E LE N G T L +A + D+ + L+ A+ + +D G+TP A A+ CLK L E
Sbjct: 1 MMSLFEACQQADVERIKSLIEQQCDLTQI----DDQGRTVLHYCNDHTDIACAQLILQDESVRKLILDRHDNEGCSALHLACLN------------GNMVMVKYLCEQGANVQLVDYESHTV-IHWITVCGHLHLFNILMKYGA---PVHTPDVYGAFPIHYASQLCGKDGAIEGLAILKKLIDNNVDVNCVDEHKRTPFIWAASAGAVDALRLLYKAGANPQHVDKDALTALHGVATRGHANCVRILV--ELYECPLEAKKNRLGEDINGCTALFYATSFQHVDVCRLLLDLKANPNHQDKRGRTPSHCAAAKGNLECLKYLIE 303
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A817SJ67_9BILA (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A817SJ67_9BILA) HSP 1 Score: 84.0 bits (206), Expect = 8.270e-14 Identity = 84/322 (26.09%), Postives = 141/322 (43.79%), Query Frame = 1
Query: 1 MQRLVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEAGADPKA----STPEGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEHG 954
M L AC +G+ E++ L++ + +++ E+G TALH DCA+ LLE + + EG + + +A G A V++L + D D ++ H G +++F L+ + ++T D GA P+H A + G PV +A+L++ DV D+ RTP AA T+ ++ L AG++P D L+ L A G +C+ ++ E LE + G T L +A + + + L+ A+ + KD G+TP A + CLK L E +G
Sbjct: 1 MSFLFDACQKGDVEQVKFLIERQCD----IDQVTEEGRTALHYCCEHETIDCAKILLENESIKNSIINRQDNEGFSALHLACLN------------GNAVMVKYLCEQQGDVKLVDYESHSI-FHWVTVCGHIDLFDILVQY---QAPIHTCDIYGAFPIHYASQLCGNKEPVKRLAILNKIIDNNADVDCLDEQKRTPFLWAASANATDALRTLYKAGANPLHADKDSLTALHCAATCGHISCIRMLV--ELYGCPLESEDVNGCTALFYAITLEHSNACRILLDLKANPNHKDNRGRTPSHCAALKGNIDCLKFLIEYNG 300
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Match: A0A818J7F6_9BILA (Hypothetical protein n=10 Tax=Rotaria TaxID=231623 RepID=A0A818J7F6_9BILA) HSP 1 Score: 84.0 bits (206), Expect = 1.050e-13 Identity = 84/322 (26.09%), Postives = 141/322 (43.79%), Query Frame = 1
Query: 1 MQRLVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPDCARKLLEAGADPKA----STPEGATPIVMAAQGTGKPGAPELQEGGAAKCVQFLLDAGADQTERDEVVGTVPLHTAIYSGRLEVFKTLLAGPGGEVAVNTKDSQGATPLHSACRATGATGPVAAMALLDEGCPVAVDVSVRDDSGRTPLFDAAHHGHTEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELANNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEHG 954
M L AC +G+ E++ L++ + +++ E+G TALH DCA+ LLE + + EG + + +A G A V++L + D D ++ H G +++F L+ + ++T D GA P+H A + G PV +A+L++ DV D+ RTP AA T+ ++ L AG++P D L+ L A G +C+ ++ E LE + G T L +A + + + L+ A+ + KD G+TP A + CLK L E +G
Sbjct: 1 MSFLFDACQKGDVEQVKFLIERQCD----IDQVTEEGRTALHYCCEHETIDCAKILLENESIKNSIINRQDNEGFSALHLACLN------------GNAVMVKYLCEQQGDVKLVDYESHSI-FHWVTVCGHIDLFDILVQY---QAPIHTCDIYGAFPIHYASQLCGNKEPVKRLAILNKIIDNNADVDCLDEQKRTPFLWAASANATDALRTLYKAGANPLHADKDSLTALHCAATCGHISCIRMLV--ELYGCPLESEDVNGCTALFYAITLEHSNACRILLDLKANPNHKDNRGRTPSHCAALKGNIDCLKFLIEYNG 300 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6553.17378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6553.17378.1 >prot_Ecto-sp13_S_contig6553.17378.1 ID=prot_Ecto-sp13_S_contig6553.17378.1|Name=mRNA_Ecto-sp13_S_contig6553.17378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=391bp MQRLVQACVEGNTERLTSLLDSAMNPRELVNKREEQGFTALHIAVMMGAPback to top mRNA from alignment at Ecto-sp13_S_contig6553:3491..6572- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6553.17378.1 ID=mRNA_Ecto-sp13_S_contig6553.17378.1|Name=mRNA_Ecto-sp13_S_contig6553.17378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3082bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6553:3491..6572- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6553:3491..6572- >mRNA_Ecto-sp13_S_contig6553.17378.1 ID=mRNA_Ecto-sp13_S_contig6553.17378.1|Name=mRNA_Ecto-sp13_S_contig6553.17378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6553:3491..6572- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |