mRNA_Ecto-sp13_S_contig65501.17371.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65501.17371.1
Unique NamemRNA_Ecto-sp13_S_contig65501.17371.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65501.17371.1 vs. uniprot
Match: A0A6H5KY18_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY18_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 7.670e-39
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 DFIEHHANLSFGIKRDEDFRELVINCWGLDGGGVGGGDACMPADVAYVLRRVNAPRRKFLVSYADGSQRVEEL 219
            DFIEHHANLSFGIKRDEDFRELVINCWGLDGGGVGGGDACMP DVA VL RVNAPRRKFLVSY DGSQRVEEL
Sbjct: 1306 DFIEHHANLSFGIKRDEDFRELVINCWGLDGGGVGGGDACMPVDVADVLSRVNAPRRKFLVSYEDGSQRVEEL 1378
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BLAST of mRNA_Ecto-sp13_S_contig65501.17371.1 vs. uniprot
Match: D8LQ60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ60_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 3.630e-38
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 DFIEHHANLSFGIKRDEDFRELVINCWGLDGGGVGGGDACMPADVAYVLRRVNAPRRKFLVSYADGSQRVEEL 219
            DFIEHHANLSFGIKRDEDFRELVINCWGLDGG VG GD CMPADVA +LRRVNAPRRKFLVSYADGSQRVEEL
Sbjct: 1302 DFIEHHANLSFGIKRDEDFRELVINCWGLDGGAVGDGDVCMPADVADMLRRVNAPRRKFLVSYADGSQRVEEL 1374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65501.17371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY18_9PHAE7.670e-3994.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LQ60_ECTSI3.630e-3893.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65501contigEcto-sp13_S_contig65501:7..225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score144.8
Seed ortholog evalue1.6e-32
Seed eggNOG ortholog2880.D8LQ60
Model size219
KEGG koko:K03234
KEGG Pathwayko04152,ko04921,map04152,map04921
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Cds size219
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463903.2827954-CDS-Ecto-sp13_S_contig65501:6..2251681463903.2827954-CDS-Ecto-sp13_S_contig65501:6..225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65501 7..225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65501.17371.1prot_Ecto-sp13_S_contig65501.17371.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65501 7..225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65501.17371.1

>prot_Ecto-sp13_S_contig65501.17371.1 ID=prot_Ecto-sp13_S_contig65501.17371.1|Name=mRNA_Ecto-sp13_S_contig65501.17371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
DFIEHHANLSFGIKRDEDFRELVINCWGLDGGGVGGGDACMPADVAYVLR
RVNAPRRKFLVSYADGSQRVEEL
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mRNA from alignment at Ecto-sp13_S_contig65501:7..225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65501.17371.1 ID=mRNA_Ecto-sp13_S_contig65501.17371.1|Name=mRNA_Ecto-sp13_S_contig65501.17371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65501:7..225- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTCATCGAACACCACGCTAATCTCAGCTTCGGCATAAAAAGGGACGA
AGATTTCCGCGAGCTCGTCATCAACTGCTGGGGACTCGATGGTGGAGGTG
TCGGCGGTGGTGATGCGTGTATGCCGGCGGATGTCGCCTATGTGCTTCGT
CGGGTCAATGCCCCACGGAGGAAGTTTCTGGTGTCGTACGCGGACGGGTC
GCAGCGCGTGGAGGAGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65501:7..225-

>mRNA_Ecto-sp13_S_contig65501.17371.1 ID=mRNA_Ecto-sp13_S_contig65501.17371.1|Name=mRNA_Ecto-sp13_S_contig65501.17371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65501:7..225- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTCATCGAACACCACGCTAATCTCAGCTTCGGCATAAAAAGGGACGA
AGATTTCCGCGAGCTCGTCATCAACTGCTGGGGACTCGATGGTGGAGGTG
TCGGCGGTGGTGATGCGTGTATGCCGGCGGATGTCGCCTATGTGCTTCGT
CGGGTCAATGCCCCACGGAGGAAGTTTCTGGTGTCGTACGCGGACGGGTC
GCAGCGCGTGGAGGAGCTC
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