mRNA_Ecto-sp13_S_contig65402.17355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65402.17355.1
Unique NamemRNA_Ecto-sp13_S_contig65402.17355.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.410e-49
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:   58 VRSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKR 327
            + SCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKR
Sbjct:  179 IGSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKR 268
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.150e-33
Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:   64 SCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEK 324
            +CV+LFESMGMGTL++Y AD EEA+L NT+++YARKSQ+W+E DSTPDY+IKAE AL+ E+ RV +YLN +TE KLLRVCD EMLEK
Sbjct:  183 ACVDLFESMGMGTLEAYTADFEEAMLDNTREYYARKSQQWVEGDSTPDYLIKAEAALDCERARVGHYLNAATEPKLLRVCDREMLEK 269
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: A0A7S1B6G2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6G2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.430e-32
Identity = 61/95 (64.21%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:   40 IIISCFVRSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEK 324
            II    ++SCVELFE+MGMGTLD+YVAD E+ LL NT+++Y  + QEWI TDSTP+Y+IKAE AL  EK RVA+YLNPS+EAK+L+VC++E+LE+
Sbjct:  172 IIDKDLIKSCVELFETMGMGTLDAYVADFEQPLLQNTREYYRLRRQEWIVTDSTPEYLIKAEKALANEKARVADYLNPSSEAKILKVCEEEILEE 266
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: A0A7R9ZBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBG0_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.130e-32
Identity = 63/95 (66.32%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:   40 IIISCFVRSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEK 324
            II    V+S VEL+ESMGMGTLD+Y ADLE  LL +T+++YA+K QEWI +DSTPDY+IKAE AL  EK RVA+YLNP++E+KLLRVC++E+LEK
Sbjct:  211 IIDKTLVKSIVELYESMGMGTLDAYTADLEGPLLDSTREYYAKKRQEWIVSDSTPDYLIKAERALIEEKNRVADYLNPASESKLLRVCEEEILEK 305
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: A0A7S4ILC2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILC2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 9.430e-32
Identity = 62/95 (65.26%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:   40 IIISCFVRSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEK 324
            II    V+S +EL+ESMGMGTLD+Y ADLE  LL +T+++YA+K QEWI +DSTPDY+IKAE AL  EK RVA+YLNP++E+KLLRVC++E+LEK
Sbjct:  177 IIDKTLVKSIIELYESMGMGTLDAYTADLEGPLLDSTREYYAKKRQEWIVSDSTPDYLIKAERALIEEKNRVADYLNPASESKLLRVCEEEILEK 271
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN)

HSP 1 Score: 125 bits (314), Expect = 3.300e-31
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:   58 VRSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKR 327
            V++CVEL E+MGMG+LD+YV D E+ LL +TK++YARKSQEW+ETD TP Y+ KAE AL+AEK RVA+YLN ++E KLLRVC+ E+LE R
Sbjct:  177 VKNCVELLEAMGMGSLDAYVTDFEDQLLGSTKEYYARKSQEWVETDDTPTYLAKAEVALDAEKARVAHYLNSASEPKLLRVCEHEILELR 266
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.230e-31
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:   58 VRSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKR 327
            V++CVEL E+MGMG+LDSY AD EE LL  TK++Y R SQ WIE+D TP Y+ KAE ALEAEK RVANYLN S+E KLLRVC+ E+LEKR
Sbjct:  177 VKNCVELIEAMGMGSLDSYCADFEEELLNATKEYYKRISQAWIESDDTPTYLEKAEKALEAEKQRVANYLNSSSEPKLLRVCESELLEKR 266
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: A0A7S3UPV7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPV7_HETAK)

HSP 1 Score: 117 bits (294), Expect = 2.430e-30
Identity = 58/78 (74.36%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   94 MGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKR 327
            MG+LD+Y +DLEE LLA +++ YARKSQEWI++DSTPDYM+KAE ALE E+ RVANYLNPSTEAKLLRV D E+LEKR
Sbjct:    1 MGSLDAYNSDLEEPLLAASQEFYARKSQEWIQSDSTPDYMVKAERALEEERQRVANYLNPSTEAKLLRVVDQELLEKR 78
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: W7TGC3_9STRA (Cullin 1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGC3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.440e-30
Identity = 59/109 (54.13%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:    1 NMQPYFLRSSYIYIIISCFVRSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKR 327
            ++ P F  +S   +I    ++SCVE+FE+MG    + Y  DLEE LL++T+++YA+KSQ WIETDSTP Y++KAE ALE EK RVANYLN  TE KLL+V  +E+LEK+
Sbjct:    5 SLPPSFPLTSQGQVIDRALIKSCVEIFETMGEQK-ECYKEDLEETLLSDTREYYAKKSQGWIETDSTPAYLLKAEAALEEEKARVANYLNAETEEKLLKVVIEELLEKQ 112
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BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Match: A0A7S2UHW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHW6_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.470e-30
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:   40 IIISCFVRSCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEK 324
            II    ++S VEL+ESMGMG+LD+Y ADLE  LL +T+ +Y +K QEWIETDSTPDY+IKAE AL  E+ RV +YLN ++E KLLRVC++E+LEK
Sbjct:  180 IIDKTLIKSSVELYESMGMGSLDAYAADLEAPLLDSTRAYYVKKRQEWIETDSTPDYLIKAERALNEERNRVGDYLNSASEVKLLRVCEEEILEK 274
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65402.17355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW9_9PHAE1.410e-4997.78CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YLK2_9STRA4.150e-3370.11Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S1B6G2_9STRA1.430e-3264.21Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7R9ZBG0_9STRA4.130e-3266.32Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4ILC2_9STRA9.430e-3265.26Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F0XVV7_AURAN3.300e-3165.56CULLIN_2 domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S3JSF7_9STRA6.230e-3168.89Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3UPV7_HETAK2.430e-3074.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TGC3_9STRA5.440e-3054.13Cullin 1 (Fragment) n=1 Tax=Nannochloropsis gadita... [more]
A0A7S2UHW6_9STRA5.470e-3062.11Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65402contigEcto-sp13_S_contig65402:12..746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score177.9
Seed ortholog evalue2.5e-42
Seed eggNOG ortholog2880.D7FY17
Model size327
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
Cds size324
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.059603-UTR-Ecto-sp13_S_contig65402:11..141681463902.059603-UTR-Ecto-sp13_S_contig65402:11..14Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65402 12..14 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.081635-CDS-Ecto-sp13_S_contig65402:14..2301681463902.081635-CDS-Ecto-sp13_S_contig65402:14..230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65402 15..230 +
1681463902.0921845-CDS-Ecto-sp13_S_contig65402:638..7461681463902.0921845-CDS-Ecto-sp13_S_contig65402:638..746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65402 639..746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65402.17355.1prot_Ecto-sp13_S_contig65402.17355.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65402 15..746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65402.17355.1

>prot_Ecto-sp13_S_contig65402.17355.1 ID=prot_Ecto-sp13_S_contig65402.17355.1|Name=mRNA_Ecto-sp13_S_contig65402.17355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MQPYFLRSSYIYIIISCFVRSCVELFESMGMGTLDSYVADLEEALLANTK
DHYARKSQEWIETDSTPDYMIKAENALEAEKLRVANYLNPSTEAKLLRVC
DDEMLEKR
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mRNA from alignment at Ecto-sp13_S_contig65402:12..746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65402.17355.1 ID=mRNA_Ecto-sp13_S_contig65402.17355.1|Name=mRNA_Ecto-sp13_S_contig65402.17355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65402:12..746+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATATGCAACCTTATTTTCTTCGTTCTTCGTATATTTACATCATTATTTC
ATGTTTTGTCAGGTCGTGCGTGGAGCTGTTTGAGTCGATGGGAATGGGTA
CGCTGGACTCGTACGTGGCGGACCTCGAGGAGGCTCTCCTAGCCAACACC
AAGGACCACTACGCCAGGAAGAGCCAGGAGTGGATAGAGACAGATTCCAC
GCCAGACTACATGATCAAGGTGTTTTTTTGTGTACATCAGGATCAAATTT
GATCTGTTTGGACAATAGATTTGTAATGTAAAGATGAGCCAGGAGTGGAT
GGAGACAGACTCCACGCCGGACTACAAGATGAAGGTGTCGTACCTTTTAT
TGTAATAGGATCGAAGTGGATTTGAATGGAGAAGAGTGTTTTAAGGTACT
GCACGACTCAAGTATTACATGTAACACTACACGCGCAAAAATTGGCGCAC
TGGTACTGGAGGAATTGTCTATATGTTTTGTAGTTACCCTTGTTGCTGTT
GTTGCTGCTGTTGTTGCTGTGTGCCACGTGATATGGTACTTTTTTAGACC
CTACGGTGCCACGTGTAACAACAGCTGGTGCGCCTCTTCCGTTGGTTCAC
CGCTTATTTTTTGTTTTTATTTTTTAGGCGGAAAACGCCCTAGAGGCTGA
GAAGCTTCGAGTGGCGAACTACCTCAACCCGTCCACGGAGGCCAAGCTGC
TGCGGGTCTGCGACGACGAGATGCTCGAGAAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65402:12..746+

>mRNA_Ecto-sp13_S_contig65402.17355.1 ID=mRNA_Ecto-sp13_S_contig65402.17355.1|Name=mRNA_Ecto-sp13_S_contig65402.17355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65402:12..746+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACCTTATTTTCTTCGTTCTTCGTATATTTACATCATTATTTCATG
TTTTGTCAGGTCGTGCGTGGAGCTGTTTGAGTCGATGGGAATGGGTACGC
TGGACTCGTACGTGGCGGACCTCGAGGAGGCTCTCCTAGCCAACACCAAG
GACCACTACGCCAGGAAGAGCCAGGAGTGGATAGAGACAGATTCCACGCC
AGACTACATGATCAAGGCGGAAAACGCCCTAGAGGCTGAGAAGCTTCGAG
TGGCGAACTACCTCAACCCGTCCACGGAGGCCAAGCTGCTGCGGGTCTGC
GACGACGAGATGCTCGAGAAGAGG
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