mRNA_Ecto-sp13_S_contig653.17339.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig653.17339.1
Unique NamemRNA_Ecto-sp13_S_contig653.17339.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig653.17339.1 vs. uniprot
Match: A0A6H5J8E2_9PHAE (6-pyruvoyltetrahydropterin synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8E2_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.180e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = -2 
Query:  406 MTRSGEWSAVDVLRSGPNPRWRCKSCSTVYTGA 504
            MTRSGEWSAVDVLRSGPNPRWRCKSCSTVYTGA
Sbjct:    2 MTRSGEWSAVDVLRSGPNPRWRCKSCSTVYTGA 34
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig653.17339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8E2_9PHAE3.180e-12100.006-pyruvoyltetrahydropterin synthase n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig653contigEcto-sp13_S_contig653:1780..2786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size748
Hectar predicted targeting categoryother localisation
Exons2
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.6368825-CDS-Ecto-sp13_S_contig653:1779..21231681463900.6368825-CDS-Ecto-sp13_S_contig653:1779..2123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig653 1780..2123 -
1681463900.6506176-CDS-Ecto-sp13_S_contig653:2382..25721681463900.6506176-CDS-Ecto-sp13_S_contig653:2382..2572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig653 2383..2572 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.6627278-UTR-Ecto-sp13_S_contig653:2572..27861681463900.6627278-UTR-Ecto-sp13_S_contig653:2572..2786Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig653 2573..2786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig653.17339.1prot_Ecto-sp13_S_contig653.17339.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig653 1780..2572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig653.17339.1

>prot_Ecto-sp13_S_contig653.17339.1 ID=prot_Ecto-sp13_S_contig653.17339.1|Name=mRNA_Ecto-sp13_S_contig653.17339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MTCMSWWALRNSHAVPIAFDLRPAKTPRCCYAASEVRFQHVGPPLSTRGS
QKSATCSRLLSPACAPVYTVEQLLHLQRGFGPLLRTSTALHSPDLVIVQE
AEASCCQRWVCAERAGGGADKIHYPQQLHAGQLTFPTETCADAQYKGKIL
NLTPALRRAPRRLPLCALPPSFADTGYR
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mRNA from alignment at Ecto-sp13_S_contig653:1780..2786-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig653.17339.1 ID=mRNA_Ecto-sp13_S_contig653.17339.1|Name=mRNA_Ecto-sp13_S_contig653.17339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1007bp|location=Sequence derived from alignment at Ecto-sp13_S_contig653:1780..2786- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGGTTCCACACAACATGGACGATCTTGTCGCTCAGCGATCGATCCGGC
ATATCTCGACTACGCAGAGTCAGGTAGCAGCAGCAGTAGCAGCGGTAGCA
GTGCCAACTTCTCCGGGGAGTGTTGCAAAATAGACCGCAAGGGGACCGAC
TCCGACGGCGGCGGGGCGCAATTTCAAGATCTCGCCGCAGCAACAACAGC
AGCAGCACGACTCAATGACGTGTATGTCCTGGTGGGCGCTGCGCAATTCC
CACGCCGTACCCATCGCATTCGACCTGCGCCCAGCGAAAACACCGCGCTG
CTGCTACGCGGCGAGCGAGGTTCGATTCCAGCACGTGGGGCCACCTCTCT
CTACGAGAGGCTCCCAAAAGTCGGCCACATGTTCGAGATTACTTTCGCCT
GCCTGTGGGCACAGCAGGTCTACACTGCCCACTACCGCGGGTGAGAGAGC
TCGCTTCAAAGCAGGGAGCAATTCTCACCGGCATCTGGCACGGAGATGCG
CTCGGTGCAAGAGGGCGAGATGCGAAAACGTGGTTGTTGTGTTTGTCGAA
GAACCACCATGGCCGGCAGCAAGCGTACGACGTTTATGTCAACAACTCGG
ACACAGACACAGGCTCGACAATTGTCGCTCCTACCCCGAGGATATGCTGC
GCAATTCTCCTAGGCGCGCCAGTGTACACCGTCGAGCAACTCTTGCACCT
CCAGCGAGGATTCGGCCCACTCCTGAGGACGTCCACAGCACTCCACTCGC
CTGACCTGGTCATCGTGCAAGAAGCAGAGGCAAGTTGTTGCCAACGTTGG
GTGTGCGCTGAAAGAGCAGGGGGGGGGGCTGACAAAATACATTACCCCCA
GCAGCTACACGCGGGCCAATTAACCTTCCCAACAGAAACATGCGCAGATG
CGCAGTATAAGGGGAAAATTCTAAATCTGACACCGGCGCTGCGCCGAGCT
CCGAGGAGGCTTCCGTTGTGCGCTCTTCCTCCCTCCTTCGCGGATACTGG
CTACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig653:1780..2786-

>mRNA_Ecto-sp13_S_contig653.17339.1 ID=mRNA_Ecto-sp13_S_contig653.17339.1|Name=mRNA_Ecto-sp13_S_contig653.17339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig653:1780..2786- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTGTATGTCCTGGTGGGCGCTGCGCAATTCCCACGCCGTACCCAT
CGCATTCGACCTGCGCCCAGCGAAAACACCGCGCTGCTGCTACGCGGCGA
GCGAGGTTCGATTCCAGCACGTGGGGCCACCTCTCTCTACGAGAGGCTCC
CAAAAGTCGGCCACATGTTCGAGATTACTTTCGCCTGCCTGCGCGCCAGT
GTACACCGTCGAGCAACTCTTGCACCTCCAGCGAGGATTCGGCCCACTCC
TGAGGACGTCCACAGCACTCCACTCGCCTGACCTGGTCATCGTGCAAGAA
GCAGAGGCAAGTTGTTGCCAACGTTGGGTGTGCGCTGAAAGAGCAGGGGG
GGGGGCTGACAAAATACATTACCCCCAGCAGCTACACGCGGGCCAATTAA
CCTTCCCAACAGAAACATGCGCAGATGCGCAGTATAAGGGGAAAATTCTA
AATCTGACACCGGCGCTGCGCCGAGCTCCGAGGAGGCTTCCGTTGTGCGC
TCTTCCTCCCTCCTTCGCGGATACTGGCTACAGG
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