mRNA_Ecto-sp13_S_contig6529.17338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6529.17338.1
Unique NamemRNA_Ecto-sp13_S_contig6529.17338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: D8LSF7_ECTSI (C2-C2_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF7_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.340e-25
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            +VWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV
Sbjct:  612 EVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 663
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A6H5KSV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.340e-25
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            +VWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV
Sbjct:  163 EVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 214
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A836CCF4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.370e-16
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            +VWVVGA+L+ GV++A +SSF V+DFFD+ESQATPLL G  P FDFATT+KV
Sbjct:  715 EVWVVGAQLKEGVIAANASSFAVLDFFDYESQATPLLAGREPRFDFATTYKV 766
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A7S1TSY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSY9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-12
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            +VW+   EL+ G L  GS++F +VDF+DFES ATP++ G++P FDFATT+KV
Sbjct:  395 EVWIRKVELKDGALEEGSNTFCIVDFYDFESVATPIMAGLTPGFDFATTYKV 446
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A7S3ZSY2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSY2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.610e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            +VWVV A L+ GV+S  +S+F VVDF  +ESQAT  LPG  P FDFAT++KV
Sbjct:  568 EVWVVSASLDEGVVSPNASTFAVVDFLTYESQATQWLPGSKPEFDFATSYKV 619
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A7S3ZSY1_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSY1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.610e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            +VWVV A L+ GV+S  +S+F VVDF  +ESQAT  LPG  P FDFAT++KV
Sbjct:  568 EVWVVSASLDEGVVSPNASTFAVVDFLTYESQATQWLPGSKPEFDFATSYKV 619
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A482SAF9_9ARCH (C2-C2_1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAF9_9ARCH)

HSP 1 Score: 66.2 bits (160), Expect = 2.180e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            +VWV  A ++ GVL   SS+F+VVDFFD+ESQAT LL G+ P +DFA T+K+
Sbjct:  394 EVWVKEANIKDGVLPPASSTFVVVDFFDYESQATTLLTGMKPQWDFAATYKL 445
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A1V9YGY3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGY3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            +VWVV A  EP  +   S +F++ DFFDFESQ T LLPG  P ++FAT++K+
Sbjct:  628 EVWVVSAHFEPKYVHGSSCTFVLCDFFDFESQTTALLPGGDPVYNFATSYKI 679
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A2D4BFP6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFP6_PYTIN)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-9
Identity = 24/52 (46.15%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            ++W+V A  +  V+++ +S+FI+ DF++FESQ+TPLL G  P F+F+ TF+V
Sbjct:  678 EIWIVSATYDRSVVTSSASTFILCDFYEFESQSTPLLVGCRPEFNFSATFRV 729
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BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Match: A0A7S3XN98_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN98_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 3.470e-9
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   19 AELEPGVLSAGSS----SFIVVDFFDFESQATPLLPGVSPAFDFATTFKV 156
            AEL+ G L   +     +F++VDFFD+ESQATPLL G  P FDFATT+KV
Sbjct:    1 AELKAGALGGAADDDACTFVLVDFFDYESQATPLLRGARPKFDFATTYKV 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6529.17338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF7_ECTSI6.340e-2598.08C2-C2_1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KSV9_9PHAE6.340e-2598.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCF4_9STRA7.370e-1669.23EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S1TSY9_9STRA1.800e-1255.77Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3ZSY2_9STRA1.610e-1159.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZSY1_9STRA1.610e-1159.62Hypothetical protein (Fragment) n=3 Tax=Pelagomona... [more]
A0A482SAF9_9ARCH2.180e-1157.69C2-C2_1 domain-containing protein n=1 Tax=archaeon... [more]
A0A1V9YGY3_9STRA1.430e-1051.92Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4BFP6_PYTIN3.270e-946.15Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A7S3XN98_HETAK3.470e-958.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6529contigEcto-sp13_S_contig6529:7572..7727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.5
Seed ortholog evalue7.5e-21
Seed eggNOG ortholog2880.D8LSF7
Preferred nameRPGRIP1L
Model size156
KEGG koko:K16512,ko:K16550
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001654,GO:0001655,GO:0001664,GO:0001701,GO:0001736,GO:0001738,GO:0001754,GO:0001822,GO:0001889,GO:0002009,GO:0003002,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005886,GO:0005911,GO:0005929,GO:0005930,GO:0006935,GO:0006996,GO:0007163,GO:0007164,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008277,GO:0008283,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0021532,GO:0021537,GO:0021549,GO:0021591,GO:0021670,GO:0021772,GO:0021915,GO:0021988,GO:0022008,GO:0022037,GO:0022038,GO:0022406,GO:0022607,GO:0022615,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030054,GO:0030154,GO:0030182,GO:0030326,GO:0030900,GO:0030902,GO:0031862,GO:0031870,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035116,GO:0035136,GO:0035137,GO:0035253,GO:0035295,GO:0035869,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043583,GO:0043584,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045744,GO:0046530,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051640,GO:0051641,GO:0060039,GO:0060041,GO:0060173,GO:0060271,GO:0060322,GO:0060429,GO:0060541,GO:0061008,GO:0061351,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0072657,GO:0090102,GO:0090596,GO:0097014,GO:0097458,GO:0097499,GO:0097500,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1903441,GO:1904491,GO:1905515,GO:1990778
Exons1
EggNOG free text desc.thromboxane A2 receptor binding
EggNOG OGs2CMYB@1,2QSQG@2759
Cds size156
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.594069-CDS-Ecto-sp13_S_contig6529:7571..77271681463900.594069-CDS-Ecto-sp13_S_contig6529:7571..7727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6529 7572..7727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6529.17338.1prot_Ecto-sp13_S_contig6529.17338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6529 7572..7727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6529.17338.1

>prot_Ecto-sp13_S_contig6529.17338.1 ID=prot_Ecto-sp13_S_contig6529.17338.1|Name=mRNA_Ecto-sp13_S_contig6529.17338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
QVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTF
KV
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mRNA from alignment at Ecto-sp13_S_contig6529:7572..7727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6529.17338.1 ID=mRNA_Ecto-sp13_S_contig6529.17338.1|Name=mRNA_Ecto-sp13_S_contig6529.17338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6529:7572..7727+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTTGGGTGGTCGGTGCCGAGCTGGAGCCGGGCGTGCTTTCGGCCGG
ATCGTCGAGCTTCATCGTCGTGGACTTCTTTGACTTCGAGAGCCAGGCGA
CCCCTCTGCTGCCCGGGGTGTCGCCGGCCTTTGACTTCGCGACGACATTC
AAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6529:7572..7727+

>mRNA_Ecto-sp13_S_contig6529.17338.1 ID=mRNA_Ecto-sp13_S_contig6529.17338.1|Name=mRNA_Ecto-sp13_S_contig6529.17338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6529:7572..7727+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTTGGGTGGTCGGTGCCGAGCTGGAGCCGGGCGTGCTTTCGGCCGG
ATCGTCGAGCTTCATCGTCGTGGACTTCTTTGACTTCGAGAGCCAGGCGA
CCCCTCTGCTGCCCGGGGTGTCGCCGGCCTTTGACTTCGCGACGACATTC
AAGGTT
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