mRNA_Ecto-sp13_S_contig65172.17322.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65172.17322.1
Unique NamemRNA_Ecto-sp13_S_contig65172.17322.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65172.17322.1 vs. uniprot
Match: A0A197BVG3_9SPHN (Uncharacterized protein n=1 Tax=Sphingobium sp. 20006FA TaxID=2056888 RepID=A0A197BVG3_9SPHN)

HSP 1 Score: 64.7 bits (156), Expect = 7.860e-10
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 AYSASQARSTGHSTYSSPYGVSTYSYSYTDPTAAMLGSAMAGAVTAATVNAANENMQDTLRGLGQSALRTTTVDPGYSFGGRSIAQPIELEDEQTAEAV-LTVEAGGETTRFHFDV 345
            AYSA++  +T HSTYSSP+G STY+  +++P A    +A+ GA T   +NA  E +  T   LG++ ++ TTVDPG S+ G+ +    +L D++  + V L V   GET  F F V
Sbjct:  129 AYSATRP-TTYHSTYSSPWGRSTYTARWSNPYAGY-NAAVIGAGTGLAINAVQEQLDRTTDALGENVMQITTVDPGDSYAGKVVLA--KLRDKRLPKRVRLLVSVSGETYPFEFQV 240
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65172.17322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A197BVG3_9SPHN7.860e-1040.52Uncharacterized protein n=1 Tax=Sphingobium sp. 20... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65172contigEcto-sp13_S_contig65172:411..758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.9458385-CDS-Ecto-sp13_S_contig65172:410..7581681463898.9458385-CDS-Ecto-sp13_S_contig65172:410..758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65172 411..758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65172.17322.1prot_Ecto-sp13_S_contig65172.17322.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65172 411..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65172.17322.1

>prot_Ecto-sp13_S_contig65172.17322.1 ID=prot_Ecto-sp13_S_contig65172.17322.1|Name=mRNA_Ecto-sp13_S_contig65172.17322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
AYSASQARSTGHSTYSSPYGVSTYSYSYTDPTAAMLGSAMAGAVTAATVN
AANENMQDTLRGLGQSALRTTTVDPGYSFGGRSIAQPIELEDEQTAEAVL
TVEAGGETTRFHFDVS
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mRNA from alignment at Ecto-sp13_S_contig65172:411..758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65172.17322.1 ID=mRNA_Ecto-sp13_S_contig65172.17322.1|Name=mRNA_Ecto-sp13_S_contig65172.17322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65172:411..758- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTACTCCGCGTCACAAGCACGTTCGACCGGCCATTCCACCTATTCATC
GCCCTATGGCGTTTCGACCTACAGCTACAGCTACACAGACCCGACCGCGG
CAATGCTCGGCTCTGCCATGGCCGGCGCTGTAACGGCGGCAACCGTGAAT
GCGGCTAATGAGAACATGCAGGACACGCTCCGGGGGCTCGGCCAGTCAGC
GCTGAGAACGACCACGGTGGATCCCGGCTATTCTTTCGGGGGCCGCTCGA
TCGCCCAGCCGATCGAGCTGGAAGACGAACAGACGGCGGAGGCCGTGCTG
ACAGTCGAAGCCGGTGGTGAAACCACACGCTTCCATTTCGATGTATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65172:411..758-

>mRNA_Ecto-sp13_S_contig65172.17322.1 ID=mRNA_Ecto-sp13_S_contig65172.17322.1|Name=mRNA_Ecto-sp13_S_contig65172.17322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65172:411..758- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTACTCCGCGTCACAAGCACGTTCGACCGGCCATTCCACCTATTCATC
GCCCTATGGCGTTTCGACCTACAGCTACAGCTACACAGACCCGACCGCGG
CAATGCTCGGCTCTGCCATGGCCGGCGCTGTAACGGCGGCAACCGTGAAT
GCGGCTAATGAGAACATGCAGGACACGCTCCGGGGGCTCGGCCAGTCAGC
GCTGAGAACGACCACGGTGGATCCCGGCTATTCTTTCGGGGGCCGCTCGA
TCGCCCAGCCGATCGAGCTGGAAGACGAACAGACGGCGGAGGCCGTGCTG
ACAGTCGAAGCCGGTGGTGAAACCACACGCTTCCATTTCGATGTATCG
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