mRNA_Ecto-sp13_S_contig6517.17320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6517.17320.1
Unique NamemRNA_Ecto-sp13_S_contig6517.17320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: D7FY40_ECTSI (GTP cyclohydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY40_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.850e-127
Identity = 208/240 (86.67%), Postives = 214/240 (89.17%), Query Frame = 2 
Query:  161 MLPANNAAISTAAXXXXPPRNGSAGPAASPSKGKGAVNGVAAAGPGLKRRRSTPDVRAEETRRALVDDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS*VVLRF------------PAYNGCFR 844
            MLPANNAA STA XXXXP RNG+AGPAASPSKGKGAVNG A AGPGLKRRRS PDVRAEE RRAL DDDEGRLDKMQKACSTLLECLGEDVSREGLVKTP+RMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS + +               + NGCF+
Sbjct:    1 MLPANNAATSTAXXXXXP-RNGAAGPAASPSKGKGAVNGAAEAGPGLKRRRSAPDVRAEEMRRALADDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQ 239
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: A0A835YJ24_9STRA (GTP cyclohydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ24_9STRA)

HSP 1 Score: 217 bits (552), Expect = 3.500e-66
Identity = 105/146 (71.92%), Postives = 128/146 (87.67%), Query Frame = 2 
Query:  365 DEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            +E RL  M  A STLL C+GED +REGLV+TP RMA+ALL CT+GY + L D++N A+FEE HHEMILVKDI+++S+CEHH+VPF G+ HIAYIPRSK++GLSKLARIADMYA+RLQVQERLT+QIAEAI EA++PLGVGVVVEA+
Sbjct:   52 EEERLATMTAAVSTLLTCMGEDPTREGLVRTPYRMARALLDCTKGYEKRLDDVINGAIFEEHHHEMILVKDIDVYSMCEHHLVPFYGRAHIAYIPRSKVLGLSKLARIADMYAQRLQVQERLTKQIAEAIYEAINPLGVGVVVEAT 197
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: A0A485KAS9_9STRA (GTP cyclohydrolase 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAS9_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.390e-63
Identity = 100/146 (68.49%), Postives = 126/146 (86.30%), Query Frame = 2 
Query:  365 DEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            D  +L+KM  A   LLEC+GEDV+REGL+KTP RMAKALL CT+GY+Q LSD++NEAVF ED+ EM++V+DIE++SLCEHH+VPF GKVHI YIP  K++GLSKLARI+D++ARRLQVQERLT +IA+A+ +AV  LGVGVV+EAS
Sbjct:   33 DTEKLEKMAAAVKVLLECMGEDVTREGLLKTPMRMAKALLYCTKGYAQELSDVLNEAVFTEDYSEMVIVRDIELYSLCEHHVVPFVGKVHIGYIPNGKVLGLSKLARISDVFARRLQVQERLTNEIAQALMDAVGALGVGVVIEAS 178
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: A0A0P1B1V7_PLAHL (GTP cyclohydrolase 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1V7_PLAHL)

HSP 1 Score: 210 bits (535), Expect = 1.530e-63
Identity = 99/147 (67.35%), Postives = 128/147 (87.07%), Query Frame = 2 
Query:  362 DDEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            DD+ +L+KM  A +TLLEC+GED  REGLVKTP RMAKALL  T+GYSQSL+D++NEAVFEEDH EM++V+DI+++S+CEHHMVPFTGKVHI YIP  K++GLSKLAR++++++RRLQVQERLT+QIA AI   ++P GV VV+EA+
Sbjct:   58 DDKAKLEKMAAAVTTLLECIGEDPHREGLVKTPMRMAKALLYNTKGYSQSLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIATAIMGVIEPKGVAVVIEAT 204
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: A0A7S2SXJ0_9STRA (GTP cyclohydrolase 1 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SXJ0_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.620e-63
Identity = 105/153 (68.63%), Postives = 126/153 (82.35%), Query Frame = 2 
Query:  344 RRALVDDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            ++    +DE RL +M  A  TLLE +GED  REGL+KTP RMAKALL  T+GYS SL D++N+AVF EDH EM++V+DIEI SLCEHHMVPF GKVHI Y+P  K+IGLSKLARIA+M+ARRLQVQERLT+QIA AI++A+DPLGVGVVVE S
Sbjct:   27 KKTAAPEDE-RLARMAGAVKTLLESIGEDPGREGLLKTPERMAKALLFFTKGYSTSLPDVINDAVFHEDHSEMVIVRDIEIASLCEHHMVPFVGKVHIGYVPHRKVIGLSKLARIAEMFARRLQVQERLTKQIAHAIKDAIDPLGVGVVVECS 178
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: A0A397DFB5_9STRA (GTP cyclohydrolase 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DFB5_9STRA)

HSP 1 Score: 209 bits (532), Expect = 5.900e-63
Identity = 100/147 (68.03%), Postives = 125/147 (85.03%), Query Frame = 2 
Query:  362 DDEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            +D  +L+KM  A   LLEC+GEDV+REGL+KTP RMAKAL+ CT+GYSQ LSD++NEAVF ED+ EM++V+DIE++SLCEHH+VPF GKVHI YIP  K++GLSKLARI+D++ARRLQVQERLT +IA  + EAV  LGVGVV+EAS
Sbjct:   30 NDTEKLEKMAAAVKVLLECMGEDVTREGLLKTPMRMAKALMYCTKGYSQQLSDVLNEAVFTEDYSEMVIVRDIELYSLCEHHIVPFVGKVHIGYIPNGKVLGLSKLARISDVFARRLQVQERLTNEIARGLMEAVGALGVGVVIEAS 176
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: D0NDK8_PHYIT (GTP cyclohydrolase 1 n=13 Tax=Phytophthora TaxID=4783 RepID=D0NDK8_PHYIT)

HSP 1 Score: 208 bits (530), Expect = 8.660e-63
Identity = 98/147 (66.67%), Postives = 127/147 (86.39%), Query Frame = 2 
Query:  362 DDEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            +D+ +L+KM  A +TLLEC+GED  REGLVKTP RMAKALL  T+GY QSLSD++NEAVFEEDH EM++V+DI+++S+CEHHMVPFTGKVHI YIP  K++GLSKLAR++++++RRLQVQERLT+QIA AI   ++P GV VV+EA+
Sbjct:   58 EDKEKLEKMAAAVTTLLECIGEDPQREGLVKTPMRMAKALLYNTKGYGQSLSDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIANAIMGVIEPKGVAVVIEAT 204
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: A0A3R7FZY1_9STRA (GTP cyclohydrolase 1 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FZY1_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.140e-62
Identity = 97/147 (65.99%), Postives = 127/147 (86.39%), Query Frame = 2 
Query:  362 DDEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            +D+ +L+KM  A +TLLEC+GED  REGLVKTP RMAKA+L  T+GY QSL+D++NEAVFEEDH EM++V+DI+++S+CEHHMVPFTGKVHI YIP  K++GLSKLAR+++++ARRLQVQERLT+QIA AI   ++P GV VV+EA+
Sbjct:   67 EDKEKLEKMAAAVTTLLECIGEDTQREGLVKTPMRMAKAMLYNTKGYGQSLTDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFARRLQVQERLTKQIANAIMGVIEPQGVAVVIEAT 213
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: A0A484DTW1_BRELC (GTP cyclohydrolase 1 n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTW1_BRELC)

HSP 1 Score: 207 bits (528), Expect = 1.960e-62
Identity = 98/148 (66.22%), Postives = 127/148 (85.81%), Query Frame = 2 
Query:  359 DDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            D D+ +L+KM  A  TLLEC+GED +REGLVKTP RMAKALL  T+GY Q+L+D++NEAVFEEDH EM++V+DI+++S+CEHHMVPFTGKVHI YIP  K++GLSKLAR+++++ARRLQVQERLT+QIA AI   ++P GV VV+EA+
Sbjct:   61 DKDQEKLEKMAGAVITLLECIGEDPTREGLVKTPMRMAKALLYNTKGYGQTLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFARRLQVQERLTKQIANAIMGVIEPKGVAVVIEAT 208
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BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Match: A0A024TJ12_9STRA (GTP cyclohydrolase 1 n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJ12_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.030e-62
Identity = 97/147 (65.99%), Postives = 126/147 (85.71%), Query Frame = 2 
Query:  362 DDEGRLDKMQKACSTLLECLGEDVSREGLVKTPTRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEAS 802
            +D  +L+KM  A   LLEC+GEDV+REGL+KTP RMAKAL+ CT+GY+Q LSD++NEAVF ED+ EM++V+DIE++SLCEHH+VPF GKVHI YIP  K++GLSKLARI+D++ARRLQVQERLT +IA+ + +AV  LGVGVV+EA+
Sbjct:   29 NDTEKLEKMAAAVKVLLECMGEDVTREGLLKTPMRMAKALMYCTKGYAQELSDVLNEAVFTEDYSEMVIVRDIELYSLCEHHVVPFVGKVHIGYIPNGKVLGLSKLARISDVFARRLQVQERLTNEIAQGLMQAVGALGVGVVIEAT 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6517.17320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY40_ECTSI1.850e-12786.67GTP cyclohydrolase 1 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YJ24_9STRA3.500e-6671.92GTP cyclohydrolase 1 n=1 Tax=Tribonema minus TaxID... [more]
A0A485KAS9_9STRA1.390e-6368.49GTP cyclohydrolase 1 n=1 Tax=Aphanomyces stellatus... [more]
A0A0P1B1V7_PLAHL1.530e-6367.35GTP cyclohydrolase 1 n=1 Tax=Plasmopara halstedii ... [more]
A0A7S2SXJ0_9STRA1.620e-6368.63GTP cyclohydrolase 1 (Fragment) n=1 Tax=Rhizochrom... [more]
A0A397DFB5_9STRA5.900e-6368.03GTP cyclohydrolase 1 n=1 Tax=Aphanomyces astaci Ta... [more]
D0NDK8_PHYIT8.660e-6366.67GTP cyclohydrolase 1 n=13 Tax=Phytophthora TaxID=4... [more]
A0A3R7FZY1_9STRA1.140e-6265.99GTP cyclohydrolase 1 n=3 Tax=Phytophthora kernovia... [more]
A0A484DTW1_BRELC1.960e-6266.22GTP cyclohydrolase 1 n=2 Tax=Bremia lactucae TaxID... [more]
A0A024TJ12_9STRA2.030e-6265.99GTP cyclohydrolase 1 n=6 Tax=Aphanomyces TaxID=100... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6517contigEcto-sp13_S_contig6517:4971..7718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score374.4
Seed ortholog evalue3.6e-101
Seed eggNOG ortholog2880.D7FY40
Preferred nameGCH1
Model size973
KEGG rclassRC00263,RC00294,RC00323,RC00945,RC01188
KEGG koko:K01495
KEGG ReactionR00428,R04639,R05046,R05048
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00841,M00842,M00843
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000278,GO:0001505,GO:0001882,GO:0001883,GO:0002027,GO:0002164,GO:0002165,GO:0002168,GO:0002237,GO:0002376,GO:0003008,GO:0003013,GO:0003018,GO:0003674,GO:0003824,GO:0003924,GO:0003933,GO:0003934,GO:0005488,GO:0005509,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0006066,GO:0006082,GO:0006520,GO:0006570,GO:0006575,GO:0006582,GO:0006584,GO:0006585,GO:0006725,GO:0006728,GO:0006729,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0006809,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0007049,GO:0007275,GO:0007389,GO:0007591,GO:0008015,GO:0008016,GO:0008150,GO:0008152,GO:0008217,GO:0008270,GO:0008277,GO:0008363,GO:0009058,GO:0009072,GO:0009108,GO:0009110,GO:0009396,GO:0009605,GO:0009607,GO:0009617,GO:0009712,GO:0009713,GO:0009790,GO:0009791,GO:0009880,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010460,GO:0010632,GO:0010646,GO:0012505,GO:0014916,GO:0016020,GO:0016043,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018958,GO:0019001,GO:0019222,GO:0019238,GO:0019438,GO:0019748,GO:0019751,GO:0019752,GO:0019889,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0023051,GO:0030234,GO:0030334,GO:0030742,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031410,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032496,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032768,GO:0032770,GO:0032879,GO:0032991,GO:0033301,GO:0033555,GO:0033993,GO:0034097,GO:0034311,GO:0034312,GO:0034341,GO:0034612,GO:0034641,GO:0035150,GO:0035185,GO:0035296,GO:0035639,GO:0036094,GO:0040003,GO:0040012,GO:0042133,GO:0042136,GO:0042221,GO:0042303,GO:0042311,GO:0042335,GO:0042337,GO:0042364,GO:0042398,GO:0042416,GO:0042417,GO:0042423,GO:0042438,GO:0042440,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043095,GO:0043167,GO:0043168,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043473,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044306,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044550,GO:0045087,GO:0045428,GO:0045429,GO:0045448,GO:0045776,GO:0045823,GO:0046146,GO:0046148,GO:0046165,GO:0046173,GO:0046189,GO:0046209,GO:0046394,GO:0046483,GO:0046655,GO:0046656,GO:0046872,GO:0046914,GO:0046983,GO:0048037,GO:0048066,GO:0048067,GO:0048069,GO:0048072,GO:0048265,GO:0048518,GO:0048522,GO:0048583,GO:0048856,GO:0050662,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050880,GO:0050884,GO:0050896,GO:0050905,GO:0050999,GO:0051000,GO:0051019,GO:0051066,GO:0051171,GO:0051173,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051259,GO:0051260,GO:0051270,GO:0051291,GO:0051336,GO:0051341,GO:0051353,GO:0051704,GO:0051707,GO:0051716,GO:0060308,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071840,GO:0072593,GO:0080134,GO:0080135,GO:0090066,GO:0090322,GO:0097159,GO:0097164,GO:0097367,GO:0097458,GO:0097708,GO:0097746,GO:0097755,GO:0098772,GO:0120025,GO:0120038,GO:1900407,GO:1901031,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901615,GO:1901617,GO:1901700,GO:1901701,GO:1902882,GO:1903409,GO:1903426,GO:1903428,GO:1903522,GO:1903524,GO:1904407,GO:1905627,GO:2000026,GO:2000121,GO:2000145,GO:2000274,GO:2000377,GO:2000379,GO:2001057
Exons2
EggNOG free text desc.7,8-dihydroneopterin 3'-triphosphate biosynthetic process
EggNOG OGsCOG0302@1,KOG2698@2759
Ec32 ortholog descriptionGTP cyclohydrolase I
Ec32 orthologEc-27_007000.1
EC3.5.4.16
Cds size645
COG Functional cat.H
BiGG ReactioniMM904.YGR267C,iND750.YGR267C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.8128016-UTR-Ecto-sp13_S_contig6517:4970..51301681463898.8128016-UTR-Ecto-sp13_S_contig6517:4970..5130Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6517 4971..5130 +
1681463898.8536391-UTR-Ecto-sp13_S_contig6517:7550..77181681463898.8536391-UTR-Ecto-sp13_S_contig6517:7550..7718Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6517 7551..7718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.8298817-CDS-Ecto-sp13_S_contig6517:5130..56281681463898.8298817-CDS-Ecto-sp13_S_contig6517:5130..5628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6517 5131..5628 +
1681463898.8417876-CDS-Ecto-sp13_S_contig6517:7403..75501681463898.8417876-CDS-Ecto-sp13_S_contig6517:7403..7550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6517 7404..7550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6517.17320.1prot_Ecto-sp13_S_contig6517.17320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6517 5131..7550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6517.17320.1

>prot_Ecto-sp13_S_contig6517.17320.1 ID=prot_Ecto-sp13_S_contig6517.17320.1|Name=mRNA_Ecto-sp13_S_contig6517.17320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp
MLPANNAAISTAAAAAAPPRNGSAGPAASPSKGKGAVNGVAAAGPGLKRR
RSTPDVRAEETRRALVDDDEGRLDKMQKACSTLLECLGEDVSREGLVKTP
TRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHM
VPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIRE
AVDPLGVGVVVEAS*
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mRNA from alignment at Ecto-sp13_S_contig6517:4971..7718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6517.17320.1 ID=mRNA_Ecto-sp13_S_contig6517.17320.1|Name=mRNA_Ecto-sp13_S_contig6517.17320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2748bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6517:4971..7718+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGACAGACCAATCATGACCGCCGTGAGCTCGAGAATCCCGCATTTAC
GAACTCATCCGTAAAATTACAACGCAGTCCGTGCCCAGCAGCCGACATTC
CCCACCCCTCTCACCTCCTGTGGTCGCCAACTCGTCGCCCAGGACAAGAT
ATACGTACACATGTTGCCCGCAAATAACGCCGCTATCTCAACCGCAGCAG
CAGCAGCGGCGCCGCCCAGAAACGGCTCTGCTGGCCCTGCGGCTTCCCCA
TCAAAAGGCAAGGGCGCGGTTAACGGCGTAGCGGCAGCAGGGCCTGGGTT
GAAGCGCAGGCGCAGTACACCCGACGTTCGCGCGGAAGAGACGCGGCGTG
CGCTGGTGGATGACGACGAGGGTCGACTGGACAAGATGCAGAAGGCCTGC
TCCACTCTGCTGGAATGCCTTGGGGAGGACGTGTCAAGGGAGGGCTTGGT
CAAGACTCCCACGAGGATGGCCAAGGCCTTGCTGGCGTGCACCCGGGGGT
ACAGCCAGAGCCTGTCCGACATCGTGAACGAGGCCGTATTCGAAGAGGAC
CACCATGAGATGATTCTCGTCAAGGACATCGAGATACACAGCTTGTGCGA
GCACCACATGGTTCCGTTCACCGGAAAGGTTCACATCGCCTACATCCCCC
GATCAAAGGCAAGTACAGCGTACATACGTACCTCTATAGGTGACACAAGA
TACCACACCTGTGTGATGACCTTTCTGGAGGTTCAAGAAGTGTCGCACGG
GTGTGGTATTCTATAGGGGGTGTGATATCTTGTATGACCAGTGTCGTGAA
CTGCACTCTCAGGACTCTACCCCAAAGGGGGTGACAACTGCTGTGTAATA
AAAGATGGGTTGTGATAGTCACGTTGATGGGCGTGGCGCCGCCGCTGGAG
TCTGATTCACTGCGTTTTTGTGCCGCGATGCTTTCAGCTGTGTTATGTGC
TTCGTCCATCTCCTCGTTGACGTCGATCGTCACAGCTTTAGTGTAAGCTG
TTGCGGGCTCTTTGCGCAAAATCACGGCCTGCATGTACCACACCGGTGTG
ATAATGGGGCTCCGGTGTATATTTGTGTCTCAACGTGCAAGTAGATTTTT
TTTTTTTTTTCGGCGACGGTTGCATGCATGTCACATTGTTCAAGCCCGCT
CATGTTTCTAGTACGCCAGTGACACATACTTCACGATGCACAGCGCGGCG
CAAAACAGGTGCGCGTTTACAGTAGCTTAGCACTATAACAGTCGAATCAA
TATCCATGTGTGCCACATCAGCACCATCAGGTACGATAAAACTGCACACA
TGCACACACACAAAAGGAGTGTTTTGTGTTTTCAACCGCACTAAGACTGA
CATATTTTCATTGGTCAGCCGGTTAGCGCGGTCGATGCTAACAATGAAAA
CACACACAAACAGGCCGTTCTCTTGTGCTCTCCTTTGTGGACATTCAACC
GCGACCCCCCCCTTTATTATATGACTTAACCTCAGCCCCTACAGCATTTG
TGCCGCTTACTCCAACCCGTGGTCACTCCGAAGGTCCCTCTCCCTGAGGC
CCCCTACCCACCTCTCTTGCGGTGCTTTGCCTTTAATTTTTATTTGGAGT
AACTCTCTTCCCTCTGTGTACACACGAACAATTATGAGCGGTTTCGTTTT
CCACCAAGACCAGGAGCAGAACCTCGCTTACGCCGGGATTCGAACCCCTC
ATCCTGGCCACGTGAAGGCTTTCGAGGATACAAGTTGGACTACCGGGGCG
ATCGTTTCCATGAGTACAACAAATACCAGTAGAGTACAGCAGTGGAGGTC
CCTGTAGAATACATACATTTACATCAGAGGTCCCCGTTTAGTGTCGAGTG
TGAGCAGAAAACTCACCACTCACCGGCGCTAGTCAGGGACTGAAAATCCC
TCAACCGGCGCTGTTGAGAGCTTTGGCTGTGCGCACTGAGATTTGGCCGG
CATTAGACTAAAGTATACCGGCAACCAGCACAGGTATTCAACCAGCCCTT
GCGTTGACACCTCTATTTTACCCGCCACCCAACATTTTCCCAACATCCTC
CTCTACAACTCCCAAGCATAACATGGGGGCTTGCGTTTGCCTTTGTCTCG
GCTCTAACGTGCAATGATTATGTGGTGCCGAGCAACTTGCCGTCTCGCGC
GTCCTCTGTTAACGCCCCGGCATGTTGGGTGTGAAACTTGGAGAGGGTAG
ATCCAAATTGACGGAAACACGAAGACGCGCAGGAAAGAGCAAAAGACCAA
AAAAAATGGGAAACTCTCTAATAACTGACAGGACGCAGCAAAAGACCCAA
ACGTGGTGTATGTTCCATGCACCTTTTTCGTATTTAGCGTACATGAATGC
TTATGTATGCCGCACATGTGCCGCTGTTATGTTCGGTGCTGACACGCTCG
CTCTCTCCTTCGCCGTCCGTCCGTGCACCGCAGATCATTGGCTTGAGCAA
GCTGGCTCGAATCGCGGACATGTACGCGCGCCGGCTGCAGGTGCAAGAGA
GGTTGACGCGTCAGATCGCGGAAGCCATTCGAGAAGCTGTCGACCCGCTG
GGAGTGGGGGTGGTCGTCGAGGCATCGTGAGTCGTGCTGCGTTTCCCCGC
ATACAATGGATGTTTCCGTATCGGGTATGCACGGATGTGTTATGGTTTGG
ATTGGACGGGTGGGCTGTTCCTAGTGTCGGGGGAGATCGATGCACTGGTC
TCTTAAAGCTTTGATGCACGTCGAAGTTTTTAATGATAGCGTTCGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6517:4971..7718+

>mRNA_Ecto-sp13_S_contig6517.17320.1 ID=mRNA_Ecto-sp13_S_contig6517.17320.1|Name=mRNA_Ecto-sp13_S_contig6517.17320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6517:4971..7718+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCCCGCAAATAACGCCGCTATCTCAACCGCAGCAGCAGCAGCGGC
GCCGCCCAGAAACGGCTCTGCTGGCCCTGCGGCTTCCCCATCAAAAGGCA
AGGGCGCGGTTAACGGCGTAGCGGCAGCAGGGCCTGGGTTGAAGCGCAGG
CGCAGTACACCCGACGTTCGCGCGGAAGAGACGCGGCGTGCGCTGGTGGA
TGACGACGAGGGTCGACTGGACAAGATGCAGAAGGCCTGCTCCACTCTGC
TGGAATGCCTTGGGGAGGACGTGTCAAGGGAGGGCTTGGTCAAGACTCCC
ACGAGGATGGCCAAGGCCTTGCTGGCGTGCACCCGGGGGTACAGCCAGAG
CCTGTCCGACATCGTGAACGAGGCCGTATTCGAAGAGGACCACCATGAGA
TGATTCTCGTCAAGGACATCGAGATACACAGCTTGTGCGAGCACCACATG
GTTCCGTTCACCGGAAAGGTTCACATCGCCTACATCCCCCGATCAAAGAT
CATTGGCTTGAGCAAGCTGGCTCGAATCGCGGACATGTACGCGCGCCGGC
TGCAGGTGCAAGAGAGGTTGACGCGTCAGATCGCGGAAGCCATTCGAGAA
GCTGTCGACCCGCTGGGAGTGGGGGTGGTCGTCGAGGCATCGTGA
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