mRNA_Ecto-sp13_S_contig6512.17312.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: A0A6H5L814_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L814_9PHAE) HSP 1 Score: 362 bits (930), Expect = 4.550e-124 Identity = 182/217 (83.87%), Postives = 186/217 (85.71%), Query Frame = 3
Query: 3 HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQV-----------------SVCLRNTTEEDVLGSRTGTFRVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRK 602
HVRMGDRRELEGVTPEYFSLLE FMATVTQAVV+REQAAPMFHV+SEALYPCPS ENATFTEFP WPVERDQV SVCLRN E+ SR GTFRVEGRP+LLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGD ISFFSTECGGHGAPLQSKMIPPLAVAERGR WVPIAGSWRDPVLR KHIFSAALD LLKRK
Sbjct: 32 HVRMGDRRELEGVTPEYFSLLEDFMATVTQAVVEREQAAPMFHVFSEALYPCPSPENATFTEFPLWPVERDQVDLNVSLHRLFSLSNEKVSVCLRNAAEQGAPASRKGTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDRISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHIFSAALDALLKRK 248
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI) HSP 1 Score: 382 bits (980), Expect = 6.230e-118 Identity = 186/205 (90.73%), Postives = 191/205 (93.17%), Query Frame = 3
Query: 3 HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQVSVCLRNTTEEDVLGSRTGTFRVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQRSTR 617
HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVV+REQAAPMFHV+SEALYPCP ENATFTEFPFWPVERDQVSVC RN E+D SR TFRVEGRP+LLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGR WVPIAGSWRDPVLR KH+FSA LDELLKRKQ STR
Sbjct: 190 HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVEREQAAPMFHVFSEALYPCPFPENATFTEFPFWPVERDQVSVCPRNAAEQDGPASRPDTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHVFSAVLDELLKRKQGSTR 394
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: A0A6H5JW68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW68_9PHAE) HSP 1 Score: 203 bits (517), Expect = 6.220e-61 Identity = 104/207 (50.24%), Postives = 133/207 (64.25%), Query Frame = 3
Query: 3 HVRMGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQVSVCLRNTTEEDVLG----------SRTGTFRVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELL 593
HVR+GDR++ YF LE FM TV A + R Q P+FH++SE CPS EN F EFP WPVE DQVS C+ TT E+ +R+G F V+GR + LH+G + LSCM +A+G+LMGCSTFGQ+AGVL+ GI FFSTEC G +Q K+IPP+A+A RG WVP++GSW DPV+ + I A+LD LL
Sbjct: 82 HVRLGDRKDSLN-DDSYFDYLEDFMETVASAAIARGQDHPVFHIFSETHSRCPSAENGAFEEFPKWPVEMDQVSTCMEATTPEECPEKDAGAPSCNPTRSGIFAVDGREMNLHVGLDVQNDLSCMANANGVLMGCSTFGQVAGVLS-KGIRFFSTECAGWRTTIQYKLIPPMAIAGRGHMWVPVSGSWHDPVIASESILGASLDLLL 286
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: D7G5J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J8_ECTSI) HSP 1 Score: 198 bits (504), Expect = 4.720e-60 Identity = 103/208 (49.52%), Postives = 126/208 (60.58%), Query Frame = 3
Query: 12 MGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQVSVCLRNTTEEDVLGSRTGTF---------RVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQR 608
MGDRR + +YF +E M TV +R P+FHV+SE L PCPST F EFP WPVE D++ CL T D + GTF R+ + I+LH+G + +SCM+ ADG+LMGCSTFGQ+AG+L GIS FST C G P Q + IPPLA+AE+G WVPI GSW DPVL + IFSAALD LL K R
Sbjct: 1 MGDRRAFYDGSLQYFHNVELIMETVADEFRERGLPEPLFHVFSETLSPCPSTVTGLFDEFPIWPVELDKIEECLAAATPIDCPEKQAGTFCTPKRAGIFRIRDKSIVLHVGSDVQNEMSCMIQADGVLMGCSTFGQIAGLLT-RGISLFSTRCSGEATPHQYRSIPPLAIAEKGHLWVPIEGSWHDPVLTSRSIFSAALDTLLVAKSR 207
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: A0A6H5JXM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM8_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.140e-38 Identity = 75/187 (40.11%), Postives = 104/187 (55.61%), Query Frame = 3
Query: 75 MATVTQAVVKREQAAPMFHVYSEALYPCPSTENATFTEFPFWPVERDQVSVCLRNTTEEDVLGSR----------TGTFRVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQ 605
M + + V Q P+FH++SE PCPS E+ F EFP W V D++ C +D + TG FRV G PI+ ++G N ++L M+ AD ++MGCS FGQLAG+L+ GI FST C G+ Q+KM P A+AE G WVP+ GSW DP L IF A + ++R++
Sbjct: 1 MKVIAKEVHGLGQRTPLFHIFSETELPCPSLEDGVFPEFPEWAVAPDEIRECHSARPPDDCPEKQAGGDFCYPHHTGIFRVPGEPIIFNVGGNVVQSLMSMISADAVVMGCSAFGQLAGILS-KGIKLFSTGCEGNMTWEQNKMAPLFAIAELGELWVPLEGSWADPTLTNVGIFRKAFELYVEREE 186
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Match: A0A6H5JJ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ94_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 8.420e-18 Identity = 50/141 (35.46%), Postives = 66/141 (46.81%), Query Frame = 3
Query: 213 DQVSVCLRNTTEEDVLGSRTGTF---------RVEGRPILLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRTWVPIAGSWRDPVLRGKHIFSAALDELLKRKQR 608
DQ+ CL TT +D + GTF R+ + I+LH+G + +SC++ ADG+LM + IPPL +AE+G WVPI GSW DPV + IFSAALD LL K R
Sbjct: 20 DQIEECLAATTPQDCPEKQAGTFCTPKRAGIFRIRYKSIVLHMGSDVQNEMSCIIEADGVLM---------------------------------RSIPPLTIAEKGHLWVPIEGSWHDPVWSSRSIFSAALDTLLVAKSR 127 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6512.17312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6512.17312.1 >prot_Ecto-sp13_S_contig6512.17312.1 ID=prot_Ecto-sp13_S_contig6512.17312.1|Name=mRNA_Ecto-sp13_S_contig6512.17312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp MGDRRELEGVTPEYFSLLEGFMATVTQAVVKREQAAPMFHVYSEALYPCPback to top mRNA from alignment at Ecto-sp13_S_contig6512:884..2228- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6512.17312.1 ID=mRNA_Ecto-sp13_S_contig6512.17312.1|Name=mRNA_Ecto-sp13_S_contig6512.17312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6512:884..2228- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6512:884..2228- >mRNA_Ecto-sp13_S_contig6512.17312.1 ID=mRNA_Ecto-sp13_S_contig6512.17312.1|Name=mRNA_Ecto-sp13_S_contig6512.17312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6512:884..2228- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |