mRNA_Ecto-sp13_S_contig65088.17303.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65088.17303.1
Unique NamemRNA_Ecto-sp13_S_contig65088.17303.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65088.17303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65088contigEcto-sp13_S_contig65088:6..664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size659
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.6412034-UTR-Ecto-sp13_S_contig65088:5..291681463897.6412034-UTR-Ecto-sp13_S_contig65088:5..29Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65088 6..29 +
1681463897.6614792-UTR-Ecto-sp13_S_contig65088:368..6641681463897.6614792-UTR-Ecto-sp13_S_contig65088:368..664Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65088 369..664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.6511283-CDS-Ecto-sp13_S_contig65088:29..3681681463897.6511283-CDS-Ecto-sp13_S_contig65088:29..368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65088 30..368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65088.17303.1prot_Ecto-sp13_S_contig65088.17303.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65088 30..368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65088.17303.1

>prot_Ecto-sp13_S_contig65088.17303.1 ID=prot_Ecto-sp13_S_contig65088.17303.1|Name=mRNA_Ecto-sp13_S_contig65088.17303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MDDRPPDGVICYSPFEASSLCSIANVILYELCFVIVVYRVLAEGVDLRPN
AIHRRSEALARCTLRPFVNNSNSSGVAVFDRVLLLACGGPSAPLKVAVSL
SCCIRVCCFLAM*
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mRNA from alignment at Ecto-sp13_S_contig65088:6..664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65088.17303.1 ID=mRNA_Ecto-sp13_S_contig65088.17303.1|Name=mRNA_Ecto-sp13_S_contig65088.17303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=659bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65088:6..664+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGTCTTTTTACGTGGTGGGTGGATGGATGACCGCCCTCCCGATGGTGT
TATCTGTTATAGTCCCTTCGAGGCCTCGTCATTATGTAGCATCGCAAATG
TTATATTGTACGAGTTATGTTTCGTTATTGTGGTGTATCGAGTGCTGGCT
GAGGGCGTTGACCTGCGACCCAATGCCATTCATCGTCGTAGCGAAGCACT
CGCGCGGTGCACGCTGCGACCCTTTGTGAACAACAGCAACAGCAGCGGTG
TTGCGGTATTCGATCGTGTTCTTCTGCTTGCATGTGGTGGCCCGTCAGCC
CCTCTGAAGGTTGCGGTCTCCCTCTCCTGCTGTATCAGAGTATGCTGTTT
CTTGGCGATGTGAAAGGATCGTTGGCTGTTTTGTTTGTACCAACGAGAGT
ATTGGGGGCACGGCTGTGCGGTTTTGAGTTTTGTTCCGTGGCATGATGGA
TGGACCTCTGGTAGCGTGCGGCATTTGTTTCTTCCGGTATGCCACAGGCG
GTGCCACCGGTACGCCAACGCTGCCTCTCGCTGTGGTGTCGTCGTCGCAC
GGTGTGTTGTTCTCCCCGTGAATGCCCACCTTCGTCGCGCAGAGCTAACT
CAGCTGGTTCGCGCTTTCCGCACTCGATGGGATGTAGCGTAAGCTTTCAC
GCAGACCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65088:6..664+

>mRNA_Ecto-sp13_S_contig65088.17303.1 ID=mRNA_Ecto-sp13_S_contig65088.17303.1|Name=mRNA_Ecto-sp13_S_contig65088.17303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65088:6..664+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGACCGCCCTCCCGATGGTGTTATCTGTTATAGTCCCTTCGAGGC
CTCGTCATTATGTAGCATCGCAAATGTTATATTGTACGAGTTATGTTTCG
TTATTGTGGTGTATCGAGTGCTGGCTGAGGGCGTTGACCTGCGACCCAAT
GCCATTCATCGTCGTAGCGAAGCACTCGCGCGGTGCACGCTGCGACCCTT
TGTGAACAACAGCAACAGCAGCGGTGTTGCGGTATTCGATCGTGTTCTTC
TGCTTGCATGTGGTGGCCCGTCAGCCCCTCTGAAGGTTGCGGTCTCCCTC
TCCTGCTGTATCAGAGTATGCTGTTTCTTGGCGATGTGA
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