mRNA_Ecto-sp13_S_contig6494.17279.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6494.17279.1
Unique NamemRNA_Ecto-sp13_S_contig6494.17279.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 6.880e-119
Identity = 218/267 (81.65%), Postives = 228/267 (85.39%), Query Frame = 1
Query:    1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVK-----------------------ITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSVGGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRRXXXXXXXXXXXXXXXXXXXXXXDNKQL 732
            MQLLSHAVPVVGGLA+FAAAALKA DHRMQT+RVVK                       ITDLAADAVE CSLARRLALRMT+GLAAGTISTT+NSVGGRGWNL +GALPDGTSEEAVMEWFTEEVAN EA+TTASRGTP EQAGRRLGK+HLKKLL AVGQGRL GTNTTEEKVEKLLEVIAGGS  R+T+ PRAEDKS VE PAVPAPSHDG LDRDAEFAALKAKLEALELADERR+XXXXXXXXXXXXXXXXXXX   DNKQL
Sbjct:  147 MQLLSHAVPVVGGLASFAAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTISTTDNSVGGRGWNLDLGALPDGTSEEAVMEWFTEEVANHEANTTASRGTPAEQAGRRLGKQHLKKLLMAVGQGRLLGTNTTEEKVEKLLEVIAGGSGSRVTKPPRAEDKSLVEYPAVPAPSHDGDLDRDAEFAALKAKLEALELADERRQXXXXXXXXXXXXXXXXXXXLQSDNKQL 413          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: A0A6H5JUH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH6_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 4.250e-76
Identity = 174/265 (65.66%), Postives = 186/265 (70.19%), Query Frame = 1
Query:  103 VKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSVGGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRR-LG-----------------KEHLKKLLRAVGQGRLQGTNTTEEK-------------VEKLL----EVIAGGSSRRITQL-------------PRA---EDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRRXXXXXXXXXXXXXXXXXXXXXXDNKQLLAEV 744
            V ITDLAAD VECCSLARRLAL MTDGLAAGT STTENSVGGRGWNLGIG +PDGTSEEA+MEWFTEEVAN EA+TTASRGTP EQ GR+ +G                 ++HLKKLL AVGQ RLQGTNTTEE              +++L     E      S R TQ+             PR     DKS VE PAVPAPSHDGGLDRDAEFA LKAKLEALELADERR+XXXXXXXXXXXXXXXXXXX   DNKQLLAEV
Sbjct:  101 VAITDLAADVVECCSLARRLALPMTDGLAAGTTSTTENSVGGRGWNLGIGTMPDGTSEEALMEWFTEEVANHEANTTASRGTPAEQVGRKEIGASAFRGTQSCTSWEAAREQHLKKLLMAVGQDRLQGTNTTEEAFWPRDPGSDFDPGLQRLCLLPSETAPSRLSGRATQVQTLIQACNDCVSYPRRLHPPDKSLVEYPAVPAPSHDGGLDRDAEFATLKAKLEALELADERRQXXXXXXXXXXXXXXXXXXXLQSDNKQLLAEV 365          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.890e-56
Identity = 125/271 (46.13%), Postives = 164/271 (60.52%), Query Frame = 1
Query:   43 ANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSVGGR-------GWNLGIGA---------LPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRRXXXXXXXXXXXXXXXXXXXXXXDNKQLLAEVDTMKKLIPKPRGEARGCVDAG 807
            A FAA ALKAGD+ +QT+RV+K+TDLA DAVECCS+A+ L LR+TD L+  TI+T+ +  GG        G   GIGA         LPD  S+E  MEWF EE A+   + T  + TPEE+ GRRLGK H++ +L AV +G LQGT+  EEKVE+LL+V+   +  +      A+++SF + PA PAPSHDGGLD  AEFAA++AKLEALE+                            +N +L  +V TM+K IPKP+GE    VD G
Sbjct:  386 AGFAAEALKAGDNNIQTRRVIKMTDLAPDAVECCSVAKLLGLRLTDYLSDETITTSYDGRGGPVHSAAGFGEGAGIGACEWSQSNGGLPDCASDEDFMEWFAEEAASCVPNNTG-KSTPEEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHPAAPAPSHDGGLDLHAEFAAMQAKLEALEI----------------------------ENGKLTRKVSTMEKSIPKPQGEPSDEVDVG 627          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 6.220e-42
Identity = 103/246 (41.87%), Postives = 141/246 (57.32%), Query Frame = 1
Query:    1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSV--------------GGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEE-QAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRI-----------------TQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADE 642
            ++ LS AVPVV GLA  AAAALKAGD  +QT+RV KI D+A D+ +CC LAR LAL+++DG   GT+ TT+ +               GG GW+  IGA PD  +EEAVM+WF EEVA+ E +   +R T    QAGR+LGK HL+ LL+AVG+  L+GTNT +EKV+ L+ +I   + RR+                  Q    +  +    PAVP    DG    D + AAL  ++ ++ +  E
Sbjct:  536 LEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRERTNHDASSAQPASRQSHAAATRPAVP----DGAAKSDIDVAALMERVASMRMRTE 777          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 6.800e-42
Identity = 103/246 (41.87%), Postives = 141/246 (57.32%), Query Frame = 1
Query:    1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSV--------------GGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTT-ASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRI-----------------TQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADE 642
            ++ LS AVPVV GLA  AAAALKAGD  +QT+RV KI D+A D+ +CC LAR LAL+++DG   GT+ TT+ +               GG GW+  IGA PD  +EEAVM+WF EEVA+ E +   A + TP  QAGR+LG  HL+ LL+AVG+  L+GTNT +EKV+ L+ +I   + RR+                  Q    +  +    PAVP    DG    D + AAL  ++ ++ +  E
Sbjct:  748 LEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHGTRERLNHDASSAQPASRQSHAAATRPAVP----DGAPKSDIDVAALMERMASMRIRTE 989          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 6.170e-41
Identity = 132/282 (46.81%), Postives = 174/282 (61.70%), Query Frame = 1
Query:    1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSVGGR-----GWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRRXXXXXXXXXXXXXXXXXXXXXXD-------NKQLLAEVDTMKKLIPK------PRGEARG 792
            M+L+S AVPVVGGL   A  AL+AGDH +QT+R+VKIT +A+DAV+CC LARRLAL++TDGL     +T +N+   R     G N G    P   SEE V E+  EEVA+ + +         +  G RLGK+HL+KLL+A+ +G L G+N TE+K+E L+  I   +   +        +  V +P V  P+HDGGL   AEF A++A LEAL+   E ++XXXXXXXXXXXXXXXXXXXXXX        NKQL  +V  M+K +P+       RG A G
Sbjct:  536 MKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGGADMTPGDMSEEDVFEYLLEEVASYKRN---------DHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQAALEALKFDRETQQXXXXXXXXXXXXXXXXXXXXXXXXXAVESRNKQLREKVAAMEKRVPEGDCEPCDRGNAEG 808          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.290e-40
Identity = 94/189 (49.74%), Postives = 114/189 (60.32%), Query Frame = 1
Query:    1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSV-----GGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTT-ASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPA 549
            ++LLS AVP+VGGL   A+AALK GD  +QT+RVVKI D+A DAVECCSLARRLA                        GG GW+ G  ALPDG  +  VMEWF +EVAN E     A+R TPEEQAGRRLGK+HL+ LL AVG GRL+G  + EEKVE L+  +           P+A D    + P+
Sbjct:  849 LKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXGGGGWSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPEDEGNAVSTPQAPDVVVEQVPS 1037          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 5.550e-39
Identity = 101/242 (41.74%), Postives = 141/242 (58.26%), Query Frame = 1
Query:    1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENS----------VGGR----GWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEE-QAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRI------TQLPRAEDKSFVE-------APAVPAPSHDGGLDRDAEFAALKAKLEALELADE 642
            ++ LS AVPVV GLA  AAAALKAGD  +QT+RV KI D+A D+ +CC LAR LAL+++DG   GT+ T + +          +GG     GW+  IGA PD  +EEAVM+WF EEVA+ E +   +R T    QAGR+LG  HL+ LL+AVG+  L+GTNT +EKV+ L+ +I   + R++      TQ     D S  +       A A    + DG    D + AAL  ++ ++ +  E
Sbjct:  563 LEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQERTNHDASSAQPASRQSHAAATRPAAPDGAAKNDLDVAALMERMASMRIRTE 804          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.090e-38
Identity = 97/228 (42.54%), Postives = 132/228 (57.89%), Query Frame = 1
Query:    1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGT-----------ISTTENSVGGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRR 651
            + LLS AVPV+ GLA  A  AL+ GDH +QT+R+VKIT +AAD +ECCSLARRLAL++TDGL   T              T    GG G        PD   E+ V E+  EEVA  E S         +  G+RLGK+HL+KLL+A+ +G L G++  ++K+E LL  I  G+  R ++      K  V +P   AP+HDG L   A+ AAL+A +E L LA +++R
Sbjct:  563 LVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMNGGSGSGRDADISPDDMIEDDVFEYLLEEVARYERS---------DHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMADIAALQAAVEVLTLAKDKQR 781          
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 3.320e-37
Identity = 91/225 (40.44%), Postives = 134/225 (59.56%), Query Frame = 1
Query:    1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENS--------VGGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRR 651
            ++L+S AVP++GGL   A  AL+AGD  +QT+R+VKIT +A D VECCSLARRLAL++TDGL     +T +++         GG G   G   +P   SEE V ++  EEV   E +         +  G+RLGK+HL+KLL+A+  G L G+N T +K++ LL  I   +  +    P    +  V +P   A +HD GL   AEFAA++A+L AL+ A ++++
Sbjct:  291 LKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERN---------DHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQ 506          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KEA4_9PHAE6.880e-11981.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUH6_9PHAE4.250e-7665.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A7_ECTSI4.890e-5646.13Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA2_ECTSI6.220e-4241.87Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA0_ECTSI6.800e-4241.87Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FH90_ECTSI6.170e-4146.81Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FPS8_ECTSI9.290e-4049.74Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FUA1_ECTSI5.550e-3941.74Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5KZF6_9PHAE1.090e-3842.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L2_ECTSI3.320e-3740.44Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6494contigEcto-sp13_S_contig6494:1455..4110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score205.3
Seed ortholog evalue3.7e-50
Seed eggNOG ortholog2880.D7G8A7
Model size832
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2E19U@1,2S8MQ@2759
Cds size831
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6494.17279.1prot_Ecto-sp13_S_contig6494.17279.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6494 1455..4110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.8756657-CDS-Ecto-sp13_S_contig6494:1454..15441681463895.8756657-CDS-Ecto-sp13_S_contig6494:1454..1544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6494 1455..1544 -
1681463895.890104-CDS-Ecto-sp13_S_contig6494:1715..20031681463895.890104-CDS-Ecto-sp13_S_contig6494:1715..2003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6494 1716..2003 -
1681463895.9060836-CDS-Ecto-sp13_S_contig6494:2275..23681681463895.9060836-CDS-Ecto-sp13_S_contig6494:2275..2368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6494 2276..2368 -
1681463895.9163675-CDS-Ecto-sp13_S_contig6494:2497..26341681463895.9163675-CDS-Ecto-sp13_S_contig6494:2497..2634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6494 2498..2634 -
1681463895.9267895-CDS-Ecto-sp13_S_contig6494:3743..38581681463895.9267895-CDS-Ecto-sp13_S_contig6494:3743..3858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6494 3744..3858 -
1681463895.9373643-CDS-Ecto-sp13_S_contig6494:4002..41101681463895.9373643-CDS-Ecto-sp13_S_contig6494:4002..4110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6494 4003..4110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6494.17279.1

>prot_Ecto-sp13_S_contig6494.17279.1 ID=prot_Ecto-sp13_S_contig6494.17279.1|Name=mRNA_Ecto-sp13_S_contig6494.17279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSL
ARRLALRMTDGLAAGTISTTENSVGGRGWNLGIGALPDGTSEEAVMEWFT
EEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEE
KVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFA
ALKAKLEALELADERRRAKLEVLELAEERRQAEFEELQSDNKQLLAEVDT
MKKLIPKPRGEARGCVDAGETICFCCM
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mRNA from alignment at Ecto-sp13_S_contig6494:1455..4110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6494.17279.1 ID=mRNA_Ecto-sp13_S_contig6494.17279.1|Name=mRNA_Ecto-sp13_S_contig6494.17279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2656bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6494:1455..4110- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAATTGCTCTCTCACGCAGTTCCCGTGGTCGGTGGACTAGCGAACTT CGCAGCCGCAGCTTTGAAGGCCGGGGACCACCGCATGCAAACTCAACGAG TGGTCAAGGTGAGCAGATTTTCATGGCTGTGGGGTGTAGGGTAGCTCGAC GTCGTTGGGAAACACTGTACGCGTCCAGTGTAGCATCTCCAGCCTTCGAC TTACGTTCACAATCGGACCACCGGCCTCAACCCAACTTTTTGATGATTGC AGATCACCGACCTGGCAGCTGATGCGGTTGAGTGCTGTTCGCTGGCGAGG AGGTTGGCCCTACGAATGACGGACGGTCTTGCCGCCGGCACAATCTCCAC GACCGAGAACTCAGTCGGTAAGAATGATGTTCGAACGTGCCACTGGGTTA TTCGCCTGGCACGTCCCTTGGTGGGCAGCGCCGTCGCACGCAAGATGGTA TGATGTGGAATCCTAAGCTATCCATCCACATTCTGGTGGTGTGTGTTCAC CATGGAGCTTTGAGCAAGATAGTTTTTTTTGGTTATGGTGTGTTTCAGAT TTTCTTGTGAAATCTGCGAGTTTGTTCAGCCGAAATGGAGTACACGTTGC CCGGTGACTGTTTGGGCGGGATACCCCCAAACTCTGTTCCTGCACACACC AAGCAGATCCATAGCAGTCGGGTAGTTGGAGGAATGTTGATCCCGATGTC ATTGTTGGGATATAGACAAAAGTGGGTATACCGACCCCTTTCTCCGACCC CTTTCTCAGACAAAAGTGGGCACTCGAAAATGTGCTTTCCGGAGACTCCT GGTGACAGGGCACAACCACTCAAAGTATAATTCCGATACATGGAAAACAT GGGCAGAGCCCATGCACAGCATGAAAATCAACGTTTACGGCCTTTCGGGC ACGTCTTCACCCCATACAACGCTGCTGTATGTACCCACTCTTGTCCGATT TTTTCATTCGAACATCGACCTCCACGTCACCGCACGAGGGAACTTTTCGA ATGGAATTGTTTTTTTGGCAAGAGTGGGTACATTTCGGACAAAGGGGGGT CACAAGACAAAGGTCGGTATGCATGTATGAAAAAATTATAGATTTCGGTG GGAATATCCACCGGAATTTCGGACAGCATCGGGCAACCTGTTGGGGCCTT GTGCGCCACGGCGGTGGTGTAGGGTGAAGACGTGCCCGAAAGTCCGTAAA CGTTGATGTTCATGCTGTGCATAGGCTCTGCCCGTGTTTTCCATGCATCG GAATGTTACTTCGAGTGGTTGTGCCATGTCACCAGTAGTCTCCGGAAAGC AAATAATTTTCGAGTACCCACCTTTGTGAGTTTCCCTTTTTTGTTTGTCG TTCAGGGTAGTGTACATACGCGGTCACGTGCGACATCTCAAACCCACCGG TGAGCTAATATTGGCGCAACACCTAAACCATAGACGACCGCAGTCCACAA ACCGTTTGCTATGATCCGTGTCTCAGGAGGGCGCGGTTGGAATCTGGGCA TCGGCGCGTTGCCAGACGGTACGAGCGAGGAAGCCGTCATGGAATGGTTC ACAGAAGAGGTGGCGAACCGCGAGGCCAGCACAACCGCAAGCAGAGGGAC CCCCGAAGAACAGGTAGGAGGGACGAAACTCGGCGCGTCGGCCGCCCAAT CTTGCAGAAGTTTGTCCACTAACTACTTTTGTGTGGGAAATGTCGGCACA CCATTATTGATGCCGCACTTTTATGGTCACCGGTCTTGACAGGCTGGGAG GCGGCTCGGGAAAGAGCACCTCAAGAAGCTACTGAGGGCAGTGGGACAAG GCCGCCTCCAAGGCACGAACACCACAGAAGAAAAGGTGAGAGGCTGCTGT GTGCTCAAACCCACCGGACTCGCTTGTTTTGCGTCTCCCCTTGGTTCTCT CAGCAGCCGCAGGTTTTTGGCCTCGCTACCCAGGTTCAGACTTTGATCCG GGCGGGCAATGACCGCGTCTCTGGCTCTCTCGCAGTCTGCGCCCTCTGGG TGAAAATGGGTAGCATGTGAGTGACACTTTTCTTCGAAGGAGAATTTTCA TCGATCGCCCTCATGTTTGCTCAAGCGCTTGCTTTGGACACACGGTGATC TAAAAAGGTTGAGAAGCTGCTGGAGGTCATCGCCGGCGGGTCCAGCCGTA GGATCACTCAACTCCCCCGTGCGGAAGACAAATCGTTTGTGGAGGCTCCT GCGGTGCCAGCTCCATCCCACGACGGCGGCTTGGATCGGGACGCGGAGTT TGCCGCTCTCAAAGCGAAATTGGAAGCATTAGAGCTCGCCGATGAGAGGC GGCGAGCAAAATTGGAAGTACTAGAGCTCGCTGAAGAGAGGCGGCAAGCA GAATTTGAGGAATTGCAGTCTGACAACAAGCAGCTTCTGGCCGAGGTAAG CCGAAGTCCTGATTGCTGGCATTGCTCTGTACGTGGGGAAGCGAACACCG GGATTGGCCGTGACGAAAGTACGAAGCATTTGGTTTTGTTTGAAGAAGTG AAGGCATCTCGTCGTTGTGCTCCGCGGTCACGTTTACCACTTATTTCTTG TACCGTCTCCGGCTAGGTGGACACCATGAAGAAACTAATTCCAAAGCCTC GAGGGGAGGCACGCGGCTGCGTGGATGCCGGTGAGACCATCTGTTTTTGC TGCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6494:1455..4110-

>mRNA_Ecto-sp13_S_contig6494.17279.1 ID=mRNA_Ecto-sp13_S_contig6494.17279.1|Name=mRNA_Ecto-sp13_S_contig6494.17279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6494:1455..4110- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAATTGCTCTCTCACGCAGTTCCCGTGGTCGGTGGACTAGCGAACTT
CGCAGCCGCAGCTTTGAAGGCCGGGGACCACCGCATGCAAACTCAACGAG
TGGTCAAGATCACCGACCTGGCAGCTGATGCGGTTGAGTGCTGTTCGCTG
GCGAGGAGGTTGGCCCTACGAATGACGGACGGTCTTGCCGCCGGCACAAT
CTCCACGACCGAGAACTCAGTCGGAGGGCGCGGTTGGAATCTGGGCATCG
GCGCGTTGCCAGACGGTACGAGCGAGGAAGCCGTCATGGAATGGTTCACA
GAAGAGGTGGCGAACCGCGAGGCCAGCACAACCGCAAGCAGAGGGACCCC
CGAAGAACAGGCTGGGAGGCGGCTCGGGAAAGAGCACCTCAAGAAGCTAC
TGAGGGCAGTGGGACAAGGCCGCCTCCAAGGCACGAACACCACAGAAGAA
AAGGTTGAGAAGCTGCTGGAGGTCATCGCCGGCGGGTCCAGCCGTAGGAT
CACTCAACTCCCCCGTGCGGAAGACAAATCGTTTGTGGAGGCTCCTGCGG
TGCCAGCTCCATCCCACGACGGCGGCTTGGATCGGGACGCGGAGTTTGCC
GCTCTCAAAGCGAAATTGGAAGCATTAGAGCTCGCCGATGAGAGGCGGCG
AGCAAAATTGGAAGTACTAGAGCTCGCTGAAGAGAGGCGGCAAGCAGAAT
TTGAGGAATTGCAGTCTGACAACAAGCAGCTTCTGGCCGAGGTGGACACC
ATGAAGAAACTAATTCCAAAGCCTCGAGGGGAGGCACGCGGCTGCGTGGA
TGCCGGTGAGACCATCTGTTTTTGCTGCATG
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