mRNA_Ecto-sp13_S_contig6494.17279.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE) HSP 1 Score: 356 bits (913), Expect = 6.880e-119 Identity = 218/267 (81.65%), Postives = 228/267 (85.39%), Query Frame = 1
Query: 1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVK-----------------------ITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSVGGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRRXXXXXXXXXXXXXXXXXXXXXXDNKQL 732
MQLLSHAVPVVGGLA+FAAAALKA DHRMQT+RVVK ITDLAADAVE CSLARRLALRMT+GLAAGTISTT+NSVGGRGWNL +GALPDGTSEEAVMEWFTEEVAN EA+TTASRGTP EQAGRRLGK+HLKKLL AVGQGRL GTNTTEEKVEKLLEVIAGGS R+T+ PRAEDKS VE PAVPAPSHDG LDRDAEFAALKAKLEALELADERR+XXXXXXXXXXXXXXXXXXX DNKQL
Sbjct: 147 MQLLSHAVPVVGGLASFAAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTISTTDNSVGGRGWNLDLGALPDGTSEEAVMEWFTEEVANHEANTTASRGTPAEQAGRRLGKQHLKKLLMAVGQGRLLGTNTTEEKVEKLLEVIAGGSGSRVTKPPRAEDKSLVEYPAVPAPSHDGDLDRDAEFAALKAKLEALELADERRQXXXXXXXXXXXXXXXXXXXLQSDNKQL 413
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: A0A6H5JUH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH6_9PHAE) HSP 1 Score: 246 bits (627), Expect = 4.250e-76 Identity = 174/265 (65.66%), Postives = 186/265 (70.19%), Query Frame = 1
Query: 103 VKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSVGGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRR-LG-----------------KEHLKKLLRAVGQGRLQGTNTTEEK-------------VEKLL----EVIAGGSSRRITQL-------------PRA---EDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRRXXXXXXXXXXXXXXXXXXXXXXDNKQLLAEV 744
V ITDLAAD VECCSLARRLAL MTDGLAAGT STTENSVGGRGWNLGIG +PDGTSEEA+MEWFTEEVAN EA+TTASRGTP EQ GR+ +G ++HLKKLL AVGQ RLQGTNTTEE +++L E S R TQ+ PR DKS VE PAVPAPSHDGGLDRDAEFA LKAKLEALELADERR+XXXXXXXXXXXXXXXXXXX DNKQLLAEV
Sbjct: 101 VAITDLAADVVECCSLARRLALPMTDGLAAGTTSTTENSVGGRGWNLGIGTMPDGTSEEALMEWFTEEVANHEANTTASRGTPAEQVGRKEIGASAFRGTQSCTSWEAAREQHLKKLLMAVGQDRLQGTNTTEEAFWPRDPGSDFDPGLQRLCLLPSETAPSRLSGRATQVQTLIQACNDCVSYPRRLHPPDKSLVEYPAVPAPSHDGGLDRDAEFATLKAKLEALELADERRQXXXXXXXXXXXXXXXXXXXLQSDNKQLLAEV 365
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI) HSP 1 Score: 201 bits (510), Expect = 4.890e-56 Identity = 125/271 (46.13%), Postives = 164/271 (60.52%), Query Frame = 1
Query: 43 ANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSVGGR-------GWNLGIGA---------LPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRRXXXXXXXXXXXXXXXXXXXXXXDNKQLLAEVDTMKKLIPKPRGEARGCVDAG 807
A FAA ALKAGD+ +QT+RV+K+TDLA DAVECCS+A+ L LR+TD L+ TI+T+ + GG G GIGA LPD S+E MEWF EE A+ + T + TPEE+ GRRLGK H++ +L AV +G LQGT+ EEKVE+LL+V+ + + A+++SF + PA PAPSHDGGLD AEFAA++AKLEALE+ +N +L +V TM+K IPKP+GE VD G
Sbjct: 386 AGFAAEALKAGDNNIQTRRVIKMTDLAPDAVECCSVAKLLGLRLTDYLSDETITTSYDGRGGPVHSAAGFGEGAGIGACEWSQSNGGLPDCASDEDFMEWFAEEAASCVPNNTG-KSTPEEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHPAAPAPSHDGGLDLHAEFAAMQAKLEALEI----------------------------ENGKLTRKVSTMEKSIPKPQGEPSDEVDVG 627
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 163 bits (413), Expect = 6.220e-42 Identity = 103/246 (41.87%), Postives = 141/246 (57.32%), Query Frame = 1
Query: 1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSV--------------GGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEE-QAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRI-----------------TQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADE 642
++ LS AVPVV GLA AAAALKAGD +QT+RV KI D+A D+ +CC LAR LAL+++DG GT+ TT+ + GG GW+ IGA PD +EEAVM+WF EEVA+ E + +R T QAGR+LGK HL+ LL+AVG+ L+GTNT +EKV+ L+ +I + RR+ Q + + PAVP DG D + AAL ++ ++ + E
Sbjct: 536 LEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRERTNHDASSAQPASRQSHAAATRPAVP----DGAAKSDIDVAALMERVASMRMRTE 777
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 163 bits (413), Expect = 6.800e-42 Identity = 103/246 (41.87%), Postives = 141/246 (57.32%), Query Frame = 1
Query: 1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSV--------------GGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTT-ASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRI-----------------TQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADE 642
++ LS AVPVV GLA AAAALKAGD +QT+RV KI D+A D+ +CC LAR LAL+++DG GT+ TT+ + GG GW+ IGA PD +EEAVM+WF EEVA+ E + A + TP QAGR+LG HL+ LL+AVG+ L+GTNT +EKV+ L+ +I + RR+ Q + + PAVP DG D + AAL ++ ++ + E
Sbjct: 748 LEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHGTRERLNHDASSAQPASRQSHAAATRPAVP----DGAPKSDIDVAALMERMASMRIRTE 989
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 160 bits (405), Expect = 6.170e-41 Identity = 132/282 (46.81%), Postives = 174/282 (61.70%), Query Frame = 1
Query: 1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSVGGR-----GWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRRXXXXXXXXXXXXXXXXXXXXXXD-------NKQLLAEVDTMKKLIPK------PRGEARG 792
M+L+S AVPVVGGL A AL+AGDH +QT+R+VKIT +A+DAV+CC LARRLAL++TDGL +T +N+ R G N G P SEE V E+ EEVA+ + + + G RLGK+HL+KLL+A+ +G L G+N TE+K+E L+ I + + + V +P V P+HDGGL AEF A++A LEAL+ E ++XXXXXXXXXXXXXXXXXXXXXX NKQL +V M+K +P+ RG A G
Sbjct: 536 MKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGGADMTPGDMSEEDVFEYLLEEVASYKRN---------DHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQAALEALKFDRETQQXXXXXXXXXXXXXXXXXXXXXXXXXAVESRNKQLREKVAAMEKRVPEGDCEPCDRGNAEG 808
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 157 bits (397), Expect = 9.290e-40 Identity = 94/189 (49.74%), Postives = 114/189 (60.32%), Query Frame = 1
Query: 1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENSV-----GGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTT-ASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPA 549
++LLS AVP+VGGL A+AALK GD +QT+RVVKI D+A DAVECCSLARRLA GG GW+ G ALPDG + VMEWF +EVAN E A+R TPEEQAGRRLGK+HL+ LL AVG GRL+G + EEKVE L+ + P+A D + P+
Sbjct: 849 LKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXGGGGWSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPEDEGNAVSTPQAPDVVVEQVPS 1037
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 155 bits (391), Expect = 5.550e-39 Identity = 101/242 (41.74%), Postives = 141/242 (58.26%), Query Frame = 1
Query: 1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENS----------VGGR----GWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEE-QAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRI------TQLPRAEDKSFVE-------APAVPAPSHDGGLDRDAEFAALKAKLEALELADE 642
++ LS AVPVV GLA AAAALKAGD +QT+RV KI D+A D+ +CC LAR LAL+++DG GT+ T + + +GG GW+ IGA PD +EEAVM+WF EEVA+ E + +R T QAGR+LG HL+ LL+AVG+ L+GTNT +EKV+ L+ +I + R++ TQ D S + A A + DG D + AAL ++ ++ + E
Sbjct: 563 LEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQERTNHDASSAQPASRQSHAAATRPAAPDGAAKNDLDVAALMERMASMRIRTE 804
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.090e-38 Identity = 97/228 (42.54%), Postives = 132/228 (57.89%), Query Frame = 1
Query: 1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGT-----------ISTTENSVGGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRR 651
+ LLS AVPV+ GLA A AL+ GDH +QT+R+VKIT +AAD +ECCSLARRLAL++TDGL T T GG G PD E+ V E+ EEVA E S + G+RLGK+HL+KLL+A+ +G L G++ ++K+E LL I G+ R ++ K V +P AP+HDG L A+ AAL+A +E L LA +++R
Sbjct: 563 LVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMNGGSGSGRDADISPDDMIEDDVFEYLLEEVARYERS---------DHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMADIAALQAAVEVLTLAKDKQR 781
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 149 bits (375), Expect = 3.320e-37 Identity = 91/225 (40.44%), Postives = 134/225 (59.56%), Query Frame = 1
Query: 1 MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLARRLALRMTDGLAAGTISTTENS--------VGGRGWNLGIGALPDGTSEEAVMEWFTEEVANREASTTASRGTPEEQAGRRLGKEHLKKLLRAVGQGRLQGTNTTEEKVEKLLEVIAGGSSRRITQLPRAEDKSFVEAPAVPAPSHDGGLDRDAEFAALKAKLEALELADERRR 651
++L+S AVP++GGL A AL+AGD +QT+R+VKIT +A D VECCSLARRLAL++TDGL +T +++ GG G G +P SEE V ++ EEV E + + G+RLGK+HL+KLL+A+ G L G+N T +K++ LL I + + P + V +P A +HD GL AEFAA++A+L AL+ A ++++
Sbjct: 291 LKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERN---------DHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQ 506 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6494.17279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6494.17279.1 >prot_Ecto-sp13_S_contig6494.17279.1 ID=prot_Ecto-sp13_S_contig6494.17279.1|Name=mRNA_Ecto-sp13_S_contig6494.17279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp MQLLSHAVPVVGGLANFAAAALKAGDHRMQTQRVVKITDLAADAVECCSLback to top mRNA from alignment at Ecto-sp13_S_contig6494:1455..4110- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6494.17279.1 ID=mRNA_Ecto-sp13_S_contig6494.17279.1|Name=mRNA_Ecto-sp13_S_contig6494.17279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2656bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6494:1455..4110- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6494:1455..4110- >mRNA_Ecto-sp13_S_contig6494.17279.1 ID=mRNA_Ecto-sp13_S_contig6494.17279.1|Name=mRNA_Ecto-sp13_S_contig6494.17279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6494:1455..4110- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |