mRNA_Ecto-sp13_S_contig64834.17268.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64834.17268.1
Unique NamemRNA_Ecto-sp13_S_contig64834.17268.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A0A7S3M0Q2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0Q2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-15
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLY 144
            AH GAV+ +RWS DG+A+ + GEDGD+KIWS+SGNLRSTL+ TG S+Y
Sbjct:   95 AHSGAVILIRWSHDGAAILTAGEDGDIKIWSKSGNLRSTLVSTGQSVY 142
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A0A2G8JQB2_STIJA (Putative intraflagellar transport protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JQB2_STIJA)

HSP 1 Score: 74.3 bits (181), Expect = 2.360e-14
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL 150
            AH GAV+C RWS DGSA+ + GEDG VKIWSRSG LRST+ QTG  +Y++
Sbjct:  116 AHRGAVLCGRWSYDGSAMATSGEDGQVKIWSRSGMLRSTIAQTGSPVYSI 165
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A0A7S1EYY4_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1EYY4_NOCSC)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL 150
            AH GAV+ VRWS DGSA+ S GEDG VK+WSRSG LRSTL Q  H++Y++
Sbjct:   35 AHRGAVISVRWSLDGSAIASAGEDGSVKVWSRSGMLRSTLTQMPHAVYSV 84
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A0A2G8L758_STIJA (Putative intraflagellar transport protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L758_STIJA)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL 150
            AH GAV+C RWS DGSA+ + GEDG VKIWSRSG LRST+ QTG  +Y++
Sbjct:   90 AHRGAVLCGRWSYDGSAMATSGEDGQVKIWSRSGMLRSTIAQTGSPVYSI 139
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A0A507DTG5_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DTG5_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL 150
            AH GAV+C+RW+ +GSAL + GEDG VKIWSRSG LRS ++QTG+ +Y++
Sbjct:  113 AHKGAVLCLRWNNEGSALVTAGEDGHVKIWSRSGMLRSVIIQTGYPIYSI 162
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: UPI0009E2D51E (intraflagellar transport protein 80 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2D51E)

HSP 1 Score: 70.5 bits (171), Expect = 9.250e-14
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL 150
            AH GAV+  RWS DGSA+ + GEDG VKIWSRSG LRSTL+QTG  +Y++
Sbjct:  104 AHRGAVLSGRWSFDGSAMVTVGEDGQVKIWSRSGMLRSTLVQTGTPVYSV 153
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A0A812RG83_SYMMI (IFT80 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RG83_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 9.920e-14
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLY 144
            AH GAV+ V WS DG+AL + GEDGDVKIWSRSGN+RS L  TG S+Y
Sbjct:   26 AHEGAVIAVDWSHDGAALLTGGEDGDVKIWSRSGNMRSVLASTGQSVY 73
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A0A6P8HPH3_ACTTE (uncharacterized protein LOC116294113 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HPH3_ACTTE)

HSP 1 Score: 72.8 bits (177), Expect = 9.930e-14
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL 150
            AH GAV+  RWS DGSA+ + GEDG VKIWSRSG LRSTLMQTG  +Y++
Sbjct:  104 AHRGAVLSGRWSYDGSAMATVGEDGQVKIWSRSGMLRSTLMQTGTPVYSV 153
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A7S6M0_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S6M0_NEMVE)

HSP 1 Score: 72.4 bits (176), Expect = 1.360e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL 150
            AH GAV+  RWS DGSA+ + GEDG VKIWSRSG LRSTLMQTG  +Y++
Sbjct:  104 AHRGAVLSGRWSYDGSAMVTVGEDGQVKIWSRSGMLRSTLMQTGTPVYSV 153
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BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Match: A0A0L0HVX2_SPIPD (Uncharacterized protein n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HVX2_SPIPD)

HSP 1 Score: 72.4 bits (176), Expect = 1.360e-13
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 AHMGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL 150
            AH GA++C+RW+ +GSAL + GEDG VKIWSRSG LRS L+Q G+ +Y+L
Sbjct:  111 AHKGALLCLRWNNEGSALITAGEDGHVKIWSRSGMLRSVLVQIGYPIYSL 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64834.17268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M0Q2_9STRA2.350e-1566.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2G8JQB2_STIJA2.360e-1466.00Putative intraflagellar transport protein n=1 Tax=... [more]
A0A7S1EYY4_NOCSC2.850e-1466.00Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A2G8L758_STIJA2.850e-1466.00Putative intraflagellar transport protein n=1 Tax=... [more]
A0A507DTG5_9FUNG2.850e-1462.00Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
UPI0009E2D51E9.250e-1466.00intraflagellar transport protein 80 homolog n=1 Ta... [more]
A0A812RG83_SYMMI9.920e-1468.75IFT80 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A6P8HPH3_ACTTE9.930e-1468.00uncharacterized protein LOC116294113 n=1 Tax=Actin... [more]
A7S6M0_NEMVE1.360e-1368.00Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A0L0HVX2_SPIPD1.360e-1362.00Uncharacterized protein n=3 Tax=Spizellomyces TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64834contigEcto-sp13_S_contig64834:3..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score69.7
Seed ortholog evalue4.2e-10
Seed eggNOG ortholog65071.PYU1_T009024
Preferred nameIFT80
Model size150
KEGG koko:K19678
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
Exons2
EggNOG free text desc.Intraflagellar Transport protein 80. Source PGD
EggNOG OGs1MAJ6@121069,COG2319@1,KOG1524@2759
Cds size144
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463894.9510157-CDS-Ecto-sp13_S_contig64834:2..681681463894.9510157-CDS-Ecto-sp13_S_contig64834:2..68Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64834 3..68 -
1681463894.9799845-CDS-Ecto-sp13_S_contig64834:521..5991681463894.9799845-CDS-Ecto-sp13_S_contig64834:521..599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64834 522..599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463894.9899962-UTR-Ecto-sp13_S_contig64834:599..6051681463894.9899962-UTR-Ecto-sp13_S_contig64834:599..605Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig64834 600..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64834.17268.1prot_Ecto-sp13_S_contig64834.17268.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64834 3..599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64834.17268.1

>prot_Ecto-sp13_S_contig64834.17268.1 ID=prot_Ecto-sp13_S_contig64834.17268.1|Name=mRNA_Ecto-sp13_S_contig64834.17268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MGAVVCVRWSPDGSALCSCGEDGDVKIWSRSGNLRSTLMQTGHSLYAL
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mRNA from alignment at Ecto-sp13_S_contig64834:3..605-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64834.17268.1 ID=mRNA_Ecto-sp13_S_contig64834.17268.1|Name=mRNA_Ecto-sp13_S_contig64834.17268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64834:3..605- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACATGGGGGCGGTCGTGTGCGTGCGCTGGAGCCCAGACGGGAGCGC
TTTGTGCTCCTGCGGCGAAGACGGAGACGTCAAGGTACCACAGCGATGGC
AGCGACAGAGAGCGCGCGGGGAGAGAGAGACAGACAGACAGACAGACAGA
TGAAGGCCGACAGCCAAACAAACGAGAGGGACTAAAACTAATCGCAGCTG
CACCGCACTGTTGGTGCAAAAAGCGTTGCTCAGCCCAGCAAGGGATGCGA
CGAGGATAGACGAAGACCGGGGGAAACCGACCTAATCAGTACCCTATCCT
ACCCTTTCTACCAAACCCTACGCTCGTCTCCCCACCGCCCCCTCCTGCGC
GCATTCTATCTCCGATAAAAACGCACACGCCGCGTATCTTTGAACCTTCG
GTTGGGTGTGCTCTGTTGAACTCAAACCAAAGTCAGGAATCCACAGAGCC
CCCCCACTCGCAACGGTAAACTTAGATAAGTGAGCACCGCCCCCTCGCCG
TCGCAACTGTGGTGTATCGCCCCTTCCTTGCTAAAAGATCTGGTCGAGAT
CTGGCAATCTGCGATCCACCTTGATGCAAACCGGTCACAGCCTATACGCG
CTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64834:3..605-

>mRNA_Ecto-sp13_S_contig64834.17268.1 ID=mRNA_Ecto-sp13_S_contig64834.17268.1|Name=mRNA_Ecto-sp13_S_contig64834.17268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64834:3..605- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGCGGTCGTGTGCGTGCGCTGGAGCCCAGACGGGAGCGCTTTGTG
CTCCTGCGGCGAAGACGGAGACGTCAAGATCTGGTCGAGATCTGGCAATC
TGCGATCCACCTTGATGCAAACCGGTCACAGCCTATACGCGCTT
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