mRNA_Ecto-sp13_S_contig6453.17223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6453.17223.1
Unique NamemRNA_Ecto-sp13_S_contig6453.17223.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.630e-39
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 2 
Query:    2 RMLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLPALWYLV 232
            RMLKRVVRAP+LFFDSNPVGRILNRFTKDMHFMDDLLPMT+YDC+ C+FMV GNTLIIFFVNPWVVLSLLPA+WY V
Sbjct:  932 RMLKRVVRAPVLFFDSNPVGRILNRFTKDMHFMDDLLPMTLYDCITCSFMVMGNTLIIFFVNPWVVLSLLPAMWYFV 1008
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 3.590e-39
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 2 
Query:    2 RMLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLPALWYLV 232
            RMLKRVVRAP+LFFDSNPVGRILNRFTKD+HFMDDLLPMT+YDC+MC FMV GNTLIIFFVNPWVVLSLLPA+WY V
Sbjct:  901 RMLKRVVRAPVLFFDSNPVGRILNRFTKDVHFMDDLLPMTLYDCIMCGFMVMGNTLIIFFVNPWVVLSLLPAMWYFV 977
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.690e-38
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 2 
Query:    2 RMLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLPALWYLV 232
            RML+RVVRAP+LFFDSNPVGRILNRFTKDMHFMDDLLPMT+YDCV C+FMVTGNTLII FVNPWVVLSLLPALW+ +
Sbjct:  851 RMLERVVRAPVLFFDSNPVGRILNRFTKDMHFMDDLLPMTLYDCVTCSFMVTGNTLIILFVNPWVVLSLLPALWFFI 927
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.040e-37
Identity = 66/75 (88.00%), Postives = 73/75 (97.33%), Query Frame = 2 
Query:    2 RMLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLPALWY 226
            RMLKRVVRAP+LFFDSNPVGRILNRFTKDMHFMDDLLPMT+YD ++C+FMVTG TLIIFFVNPWVVLS++PALWY
Sbjct:  952 RMLKRVVRAPVLFFDSNPVGRILNRFTKDMHFMDDLLPMTLYDFIICSFMVTGGTLIIFFVNPWVVLSMVPALWY 1026
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.790e-37
Identity = 65/75 (86.67%), Postives = 73/75 (97.33%), Query Frame = 2 
Query:    2 RMLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLPALWY 226
            RMLKRVVRAP+LFFDSNPVGRILNRFTKDMHFMDDLLPMT+YD ++C+FMVTG TLIIFFVNPWVVLS++PA+WY
Sbjct: 1143 RMLKRVVRAPVLFFDSNPVGRILNRFTKDMHFMDDLLPMTLYDFIICSFMVTGGTLIIFFVNPWVVLSMVPAMWY 1217
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: A0A2T7NCR6_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NCR6_POMCA)

HSP 1 Score: 87.0 bits (214), Expect = 3.100e-18
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:    5 MLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLP 214
            M  R++RAPI FFD+NPVGRILNRF KD+  MDDLLP+T +D V C  ++ G  L+  FVNPWV +  LP
Sbjct:  794 MFTRILRAPISFFDTNPVGRILNRFAKDVGHMDDLLPITFFDFVQCFLLIIGIILVAGFVNPWVFIPTLP 863
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: UPI000D73D83D (multidrug resistance-associated protein 4-like isoform X3 n=5 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D73D83D)

HSP 1 Score: 87.0 bits (214), Expect = 3.100e-18
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:    5 MLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLP 214
            M  R++RAPI FFD+NPVGRILNRF KD+  MDDLLP+T +D V C  ++ G  L+  FVNPWV +  LP
Sbjct:  805 MFTRILRAPISFFDTNPVGRILNRFAKDVGHMDDLLPITFFDFVQCFLLIIGIILVAGFVNPWVFIPTLP 874
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: A0A6P5AX34_BRABE (multidrug resistance-associated protein 4-like isoform X1 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AX34_BRABE)

HSP 1 Score: 86.3 bits (212), Expect = 5.770e-18
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 2 
Query:    2 RMLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLPALWYLV 232
            RM  RVVRAP+LFFDSNPVGRILNRF+KD+  +DDLLP  + D V  T  V G  ++   +NPWV + ++P +  LV
Sbjct:  813 RMFSRVVRAPVLFFDSNPVGRILNRFSKDLGHLDDLLPSIILDFVTITMQVLGGVILAGVINPWVFIPVVPVVLLLV 889
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: UPI0014580DF4 (multidrug resistance-associated protein 4-like isoform X1 n=3 Tax=Pecten maximus TaxID=6579 RepID=UPI0014580DF4)

HSP 1 Score: 85.5 bits (210), Expect = 1.080e-17
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:    5 MLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLP 214
            M  R++R PI+FFD+NPVGRILNRF+KD   MDD+LP+T +D + C  ++ G  L++  VNPWV + L P
Sbjct:  810 MFNRLLRVPIMFFDTNPVGRILNRFSKDTGHMDDILPITFFDFIQCFLLILGIVLVVCIVNPWVFIPLFP 879
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BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Match: C3ZEA4_BRAFL (Uncharacterized protein n=7 Tax=Branchiostoma TaxID=7737 RepID=C3ZEA4_BRAFL)

HSP 1 Score: 85.1 bits (209), Expect = 1.470e-17
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 2 
Query:    2 RMLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMVTGNTLIIFFVNPWVVLSLLPALWYLV 232
            RM + VVRAP+LFFDSNPVGRILNRF+KD+  +DDLLP T+ D V+    V G  ++   +NPWV + ++P +  LV
Sbjct:  812 RMFRSVVRAPVLFFDSNPVGRILNRFSKDLGHLDDLLPSTLLDVVVIMMQVLGGVILAGVINPWVFIPVVPVVLLLV 888
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6453.17223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW4_ECTSI2.630e-3989.61Multidrug resistance-associated protein-like prote... [more]
D8LSW3_ECTSI3.590e-3989.61Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE1.690e-3888.31ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JDN6_9PHAE2.040e-3788.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSW6_ECTSI3.790e-3786.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2T7NCR6_POMCA3.100e-1858.57Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
UPI000D73D83D3.100e-1858.57multidrug resistance-associated protein 4-like iso... [more]
A0A6P5AX34_BRABE5.770e-1854.55multidrug resistance-associated protein 4-like iso... [more]
UPI0014580DF41.080e-1752.86multidrug resistance-associated protein 4-like iso... [more]
C3ZEA4_BRAFL1.470e-1753.25Uncharacterized protein n=7 Tax=Branchiostoma TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6453contigEcto-sp13_S_contig6453:3704..5728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score144.4
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D8LSW4
Model size234
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
Cds size228
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.2951522-UTR-Ecto-sp13_S_contig6453:3703..37071681463891.2951522-UTR-Ecto-sp13_S_contig6453:3703..3707Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6453 3704..3707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.306687-CDS-Ecto-sp13_S_contig6453:3707..37661681463891.306687-CDS-Ecto-sp13_S_contig6453:3707..3766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6453 3708..3766 +
1681463891.3174443-CDS-Ecto-sp13_S_contig6453:4085..42261681463891.3174443-CDS-Ecto-sp13_S_contig6453:4085..4226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6453 4086..4226 +
1681463891.3284318-CDS-Ecto-sp13_S_contig6453:5700..57281681463891.3284318-CDS-Ecto-sp13_S_contig6453:5700..5728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6453 5701..5728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6453.17223.1prot_Ecto-sp13_S_contig6453.17223.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6453 3708..5728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6453.17223.1

>prot_Ecto-sp13_S_contig6453.17223.1 ID=prot_Ecto-sp13_S_contig6453.17223.1|Name=mRNA_Ecto-sp13_S_contig6453.17223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MLKRVVRAPILFFDSNPVGRILNRFTKDMHFMDDLLPMTVYDCVMCTFMV
TGNTLIIFFVNPWVVLSLLPALWYLV
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mRNA from alignment at Ecto-sp13_S_contig6453:3704..5728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6453.17223.1 ID=mRNA_Ecto-sp13_S_contig6453.17223.1|Name=mRNA_Ecto-sp13_S_contig6453.17223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2025bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6453:3704..5728+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAATGCTCAAGCGGGTCGTCCGCGCCCCGATCCTGTTCTTTGACTCCA
ACCCTGTCGGAAGGTATTGTTGATACTGATCCTATCTATCCTCCTAAGAA
TACTCCCCGGTGGATCACCAAGGAGAAACCGTTTCAGGAGCACAATAGTC
CGTGGCGGACGGGGTACTCCTTAACGCACACAGATGCCGTTATGTGGATG
AATTGGTCGATGGTCGATAGATCAGTCGCGTTCTATCAACGTCCGACGTC
ATCATTGGTGACCTCAGAAATCGTCGATGAATGACCTGCAGGATCGTTCT
CAAGCGCTTTGACTCACTTCGTAGCTGGAAACTCCGCCGCCTTCCTCCCA
CTTTCAATGCCCGGTGTTGTGTTGTGCTCTAGGATCCTGAACCGCTTCAC
TAAGGACATGCACTTCATGGACGATCTCCTGCCGATGACTGTGTACGACT
GCGTCATGTGCACTTTCATGGTGACGGGTAACACCCTCATCATCTTCTTC
GTCAATCCCTGGGTGGTTCTCAGGTTTGTTTGTCTGTCGAGAGGCATATA
TTCTAGACGATTCGGAGGTTTCCCACATCGTTTTCGTGAACTCCCGGGTG
GTTCTCTCAGGATTGTCTTTCGACAGGAGAATGGTTTCCAAAGACTGTCG
GCAATGTTGTTCGATCTCTTTTTCTTGCAAAGAACACCGCTGGTGCTAGT
CCTGCGGGATACGCCATTCTTGGTCACAATGCGGAAGACCGTTTTGTATT
GCGGCTTCAGTGCCTTAGCTTTTGTGACCGGTGGTTGTCGTCATTTTCTC
CCACCCGCTCGGATACCGAGCAGTTTATGCATTTCGGTACCTCAAGGGCA
CCCCGATTGCTGCTGCCTGTAGATGTGAAGATCATGATTTCACTTTCCCT
GTGAACATCATGTGGCTTCACATTTGCGAGAGTTCGTTTGTTGGAGGGGA
GTGTTGACCGTTGTTGCGCGAGTGAGATCGAGAGTTTGCCTGGTAGGAAA
ACAACTCCCTTGGAACTATTCCGAGTCGGGAGAACAAGTAGGTCTTGTCA
GTTGCGCCAGAGTCTTAAATGTGGGGGGCATGAATATGGAGCTCACAGGG
CTGAGAACAGGAAATGACGCCCGCGTTGTATGGGTCAGTATTTTGCGCAC
GGGTTCGCTGCGAGTGCACCTACAACTCTGGCGCCCTGGAATTATTTTCT
ACGAATCGAAGGACGCCGTAACCTCACCCTGTGTTACTGTTTGGGGGGAG
CATTTGCTTGCTGTCCGTATTTTGAGAATAGAGTTAGAGAGTACCACCTT
TCATATTTCTGAGAAGAACTTGCATCGGAAACCTTCAGCCTACACCGTGA
TTGGAGGAGTCATTGCCCTTTGTCCTTCTGCTATGAAACGTTGTGGCCGA
CGGGCGGAATTTTTTTGACGTGCGACTTGGCGAAAGCGATCCGGAGCGGT
TGCCGCGTATCGTGCGTCTGTGATTGCTTTTGGTCGGTATGAAGAAGTTG
GACTCGCATCCGCAGAAAATTCGGGTTGGCTTTTTGTCTCAATCTGAGTG
AAAAGTCGGTCATTCCAGCATGCTGGTAGTTGGCATTGGCCGAAGCGGAA
GCAGCAGATTCTCGTGTTTTGATTTGGACGATTGGCATCAAGCTCACTAA
GGTTTTGTTGTTTGGCTAAATCTCCTCGGGCTCGATGTGCAGATGCATCA
CTTGATGTCGTTAGTTTGTTTTTTCGCATTTGCTTTTTCTTTAGTCCAAG
AAATCGACACGAAGTCGCCACAAAGTTTCTTCCGTCGGTGAGTTTAAAAG
TTAATGCTGTGGTGATGGTTGACAAGGAGCATGGTTTCCTTGTTTTTCTC
TCGTATCGGCTACCGCGAACGACCATTGTGGCCTCTGCCGTGCTATCGAC
CCGCGCCTTTGCAGTCATCGCGAACGTCCACCACGTGAAGCAACACATTT
TGGCTTTTCCATCCCGTTCCCTTCCCAAATTGTGTGCGACCACACAGCTT
GCTCCCAGCCCTGTGGTACTTAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6453:3704..5728+

>mRNA_Ecto-sp13_S_contig6453.17223.1 ID=mRNA_Ecto-sp13_S_contig6453.17223.1|Name=mRNA_Ecto-sp13_S_contig6453.17223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6453:3704..5728+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAAGCGGGTCGTCCGCGCCCCGATCCTGTTCTTTGACTCCAACCC
TGTCGGAAGGATCCTGAACCGCTTCACTAAGGACATGCACTTCATGGACG
ATCTCCTGCCGATGACTGTGTACGACTGCGTCATGTGCACTTTCATGGTG
ACGGGTAACACCCTCATCATCTTCTTCGTCAATCCCTGGGTGGTTCTCAG
CTTGCTCCCAGCCCTGTGGTACTTAGTG
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