mRNA_Ecto-sp13_S_contig64456.17213.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64456.17213.1
Unique NamemRNA_Ecto-sp13_S_contig64456.17213.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: D7FQS1_ECTSI (Phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 6.070e-22
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            LYYNALVPLSTTSHRGRSMKYGVISTKHL EDLTDWTWLYTAGR
Sbjct:   99 LYYNALVPLSTTSHRGRSMKYGVISTKHLAEDLTDWTWLYTAGR 142
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: W2TU11_NECAM (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Necator americanus TaxID=51031 RepID=W2TU11_NECAM)

HSP 1 Score: 54.3 bits (129), Expect = 2.330e-7
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            +YYN  VP+       R MKYGVI+T  LN+DL DW WLY AGR
Sbjct:   87 IYYNTHVPVGA-----RRMKYGVIATDDLNQDLLDWKWLYVAGR 125
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: A0A8K1FRT3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRT3_PYTOL)

HSP 1 Score: 53.5 bits (127), Expect = 4.480e-7
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            LYYN LVPL   +   R +KYGV+STK L EDLT W  LY +GR
Sbjct:   87 LYYNTLVPLLNPAVGNRLIKYGVVSTKTLCEDLTAWKTLYLSGR 130
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: K3WSQ8_GLOUD (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSQ8_GLOUD)

HSP 1 Score: 52.8 bits (125), Expect = 8.500e-7
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            +YYN LVPL + +   R +KYGV+S+K L +DLT+W  LY +GR
Sbjct:   91 IYYNTLVPLQSKATGNRLIKYGVVSSKTLCDDLTNWKTLYLSGR 134
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: M4BXI2_HYAAE (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXI2_HYAAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.130e-6
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            +YYN +VPL+ T    R +KYGV+ST+ L +DLT+W  LY +GR
Sbjct:   66 VYYNTMVPLTGTLLGTRLIKYGVVSTRTLYDDLTNWKTLYLSGR 109
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: H3DBF8_TETNG (Phosphatidate cytidylyltransferase, mitochondrial n=11 Tax=Percomorphaceae TaxID=1489872 RepID=H3DBF8_TETNG)

HSP 1 Score: 51.2 bits (121), Expect = 2.930e-6
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            +YYN LVP+      GR +KYGVIST+ L EDLT W  LY AGR
Sbjct:   52 VYYNTLVPVD-----GRIIKYGVISTESLIEDLTHWKTLYVAGR 90
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: A0A267G5P5_9PLAT (Phosphatidate cytidylyltransferase, mitochondrial (Fragment) n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267G5P5_9PLAT)

HSP 1 Score: 51.2 bits (121), Expect = 3.020e-6
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            +Y+N LVP +     GR++KYGV+S   L  DLT+W WLY AGR
Sbjct:   91 VYFNTLVPAA----EGRTVKYGVVSVDSLLADLTEWRWLYLAGR 130
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: A0A7S4C389_CHRCT (Phosphatidate cytidylyltransferase, mitochondrial (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C389_CHRCT)

HSP 1 Score: 51.2 bits (121), Expect = 3.030e-6
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            +YYNAL+P+     RGR +KYGV+ST  L +DL +W+ LY +GR
Sbjct:  106 IYYNALIPV-----RGRMVKYGVMSTSRLADDLRNWSTLYVSGR 144
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: A0A0R3PQ59_ANGCS (Phosphatidate cytidylyltransferase, mitochondrial n=3 Tax=Angiostrongylus TaxID=6312 RepID=A0A0R3PQ59_ANGCS)

HSP 1 Score: 50.8 bits (120), Expect = 4.120e-6
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            +YYN  V +       R MKYGV++T++LN+DL DW WLY +GR
Sbjct:   87 VYYNTHVKVGR-----RQMKYGVVTTENLNQDLLDWRWLYVSGR 125
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BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Match: A0A1B0GGL4_GLOMM (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Glossina morsitans morsitans TaxID=37546 RepID=A0A1B0GGL4_GLOMM)

HSP 1 Score: 50.4 bits (119), Expect = 5.710e-6
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR 132
            LY+N LVPL      G ++KYGVIS +HL +DL++W +LY AGR
Sbjct:   62 LYFNTLVPLPDL---GVNIKYGVISREHLLQDLSEWRYLYIAGR 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64456.17213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS1_ECTSI6.070e-2297.73Phosphatidate cytidylyltransferase, mitochondrial ... [more]
W2TU11_NECAM2.330e-756.82Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A8K1FRT3_PYTOL4.480e-759.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WSQ8_GLOUD8.500e-752.27Phosphatidate cytidylyltransferase, mitochondrial ... [more]
M4BXI2_HYAAE2.130e-652.27Phosphatidate cytidylyltransferase, mitochondrial ... [more]
H3DBF8_TETNG2.930e-659.09Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A267G5P5_9PLAT3.020e-652.27Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A7S4C389_CHRCT3.030e-652.27Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A0R3PQ59_ANGCS4.120e-650.00Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A1B0GGL4_GLOMM5.710e-654.55Phosphatidate cytidylyltransferase, mitochondrial ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64456contigEcto-sp13_S_contig64456:483..614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.0
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D7FQS1
Preferred nameTAMM41
Model size132
KEGG koko:K17807,ko:K21121
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0019637,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032048,GO:0032049,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0061024,GO:0070013,GO:0070567,GO:0071704,GO:0071840,GO:0090407,GO:1901576
Exons1
EggNOG free text desc.phosphatidate cytidylyltransferase activity
EggNOG OGsKOG2986@1,KOG2986@2759
EC2.3.1.259
Cds size132
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463890.4697487-CDS-Ecto-sp13_S_contig64456:482..6141681463890.4697487-CDS-Ecto-sp13_S_contig64456:482..614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64456 483..614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64456.17213.1prot_Ecto-sp13_S_contig64456.17213.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64456 483..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64456.17213.1

>prot_Ecto-sp13_S_contig64456.17213.1 ID=prot_Ecto-sp13_S_contig64456.17213.1|Name=mRNA_Ecto-sp13_S_contig64456.17213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
LYYNALVPLSTTSHRGRSMKYGVISTKHLNEDLTDWTWLYTAGR
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mRNA from alignment at Ecto-sp13_S_contig64456:483..614-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64456.17213.1 ID=mRNA_Ecto-sp13_S_contig64456.17213.1|Name=mRNA_Ecto-sp13_S_contig64456.17213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64456:483..614- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTACTACAACGCCCTAGTGCCGTTGTCGACCACCTCGCACCGAGGTCG
TTCGATGAAGTATGGCGTCATCAGCACGAAGCATCTGAACGAGGATCTGA
CCGACTGGACCTGGCTTTACACCGCCGGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64456:483..614-

>mRNA_Ecto-sp13_S_contig64456.17213.1 ID=mRNA_Ecto-sp13_S_contig64456.17213.1|Name=mRNA_Ecto-sp13_S_contig64456.17213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64456:483..614- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTACTACAACGCCCTAGTGCCGTTGTCGACCACCTCGCACCGAGGTCG
TTCGATGAAGTATGGCGTCATCAGCACGAAGCATCTGAACGAGGATCTGA
CCGACTGGACCTGGCTTTACACCGCCGGCAGG
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