mRNA_Ecto-sp13_S_contig6441.17209.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6441.17209.1
Unique NamemRNA_Ecto-sp13_S_contig6441.17209.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6441.17209.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI)

HSP 1 Score: 452 bits (1162), Expect = 7.690e-157
Identity = 221/238 (92.86%), Postives = 229/238 (96.22%), Query Frame = 1 
Query:   19 QREGVLFGKFHKPPLLSTLVALGRFEGARMEWRQATWMNKEEFTGSTFQFFMKAAEGLKDADWALELHEQSLKGKKKHGRWFHPIALQVLAEAGRLEEAFGIAETLRTGGHPKLPPTSYHVLCRCCKQHGEKELVVKVVQTMRKGTMSLYLPPPDVLDFVVEAFIERGIPGEVLTLFDRMRAQRIQPNPEVYVLLADAAVAANDLPQTVHFAEMAEKGGRKASAGALAFTQSNAPPRE 732
            QREGVLFGKFHKPPLLSTLVALG+F+ AR EWRQATW NK+EFTGSTFQ FMKAAEGLKDADWALELHEQSL+GK+KHGRWFHPIALQVLAEAGRLEEAF IAETLRT GHPKLPPTSYHVLCRCCKQHGEK LVVKVVQTMRKGTMSLYLPPPDVL FVVEAFIE+GIPGEVLTLF+RMRAQRIQPNPEVYVLLADAA AANDLPQTVHFAEMAEKGGRKASAGALAFTQ+NAPPRE
Sbjct:  216 QREGVLFGKFHKPPLLSTLVALGKFKRARTEWRQATWANKKEFTGSTFQVFMKAAEGLKDADWALELHEQSLEGKQKHGRWFHPIALQVLAEAGRLEEAFRIAETLRTSGHPKLPPTSYHVLCRCCKQHGEKALVVKVVQTMRKGTMSLYLPPPDVLGFVVEAFIEKGIPGEVLTLFERMRAQRIQPNPEVYVLLADAAAAANDLPQTVHFAEMAEKGGRKASAGALAFTQNNAPPRE 453
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6441.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK81_ECTSI7.690e-15792.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6441contigEcto-sp13_S_contig6441:177..4846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size735
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-17_003100.1
Cds size735
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463890.0698838-CDS-Ecto-sp13_S_contig6441:176..3081681463890.0698838-CDS-Ecto-sp13_S_contig6441:176..308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6441 177..308 +
1681463890.0813346-CDS-Ecto-sp13_S_contig6441:1930..21281681463890.0813346-CDS-Ecto-sp13_S_contig6441:1930..2128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6441 1931..2128 +
1681463890.091563-CDS-Ecto-sp13_S_contig6441:3164..32721681463890.091563-CDS-Ecto-sp13_S_contig6441:3164..3272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6441 3165..3272 +
1681463890.1018584-CDS-Ecto-sp13_S_contig6441:3654..37831681463890.1018584-CDS-Ecto-sp13_S_contig6441:3654..3783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6441 3655..3783 +
1681463890.1120665-CDS-Ecto-sp13_S_contig6441:4678..48461681463890.1120665-CDS-Ecto-sp13_S_contig6441:4678..4846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6441 4679..4846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6441.17209.1prot_Ecto-sp13_S_contig6441.17209.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6441 177..4846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6441.17209.1

>prot_Ecto-sp13_S_contig6441.17209.1 ID=prot_Ecto-sp13_S_contig6441.17209.1|Name=mRNA_Ecto-sp13_S_contig6441.17209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MFSVVQQREGVLFGKFHKPPLLSTLVALGRFEGARMEWRQATWMNKEEFT
GSTFQFFMKAAEGLKDADWALELHEQSLKGKKKHGRWFHPIALQVLAEAG
RLEEAFGIAETLRTGGHPKLPPTSYHVLCRCCKQHGEKELVVKVVQTMRK
GTMSLYLPPPDVLDFVVEAFIERGIPGEVLTLFDRMRAQRIQPNPEVYVL
LADAAVAANDLPQTVHFAEMAEKGGRKASAGALAFTQSNAPPRE*
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mRNA from alignment at Ecto-sp13_S_contig6441:177..4846+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6441.17209.1 ID=mRNA_Ecto-sp13_S_contig6441.17209.1|Name=mRNA_Ecto-sp13_S_contig6441.17209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4670bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6441:177..4846+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCTGTGGTGCAGCAAAGGGAGGGAGTGCTGTTCGGAAAGTTTCA
CAAGCCACCGCTGCTGTCGACTTTGGTGGCGTTAGGGAGGTTCGAGGGGG
CAAGGATGGAGTGGAGACAAGCCACCTGGATGGTGAGGGAAGAATCTTTT
CTGCACAGCAGAAAATAGTTGTCGTCGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTAGTGTTGTTGCCTCCACCTTAAAAAAGCCGTTCCGATGTCTCTG
CCCAGTACGGTACATTCATTTGTCCGCACTGATCTACCCCGACGCGAATG
AATTTTTGGTCCCTCGTAGAAGGCCGCGTATCGATCAGACGGTCGATGTG
TACAGCAGTACTTTTTTTATCTGTTCGCGACGCCGTCGCACCGAAAAACG
GCGACAAAATTGTTTAAAAAGTGGAAGGTTGGAAGCAGCCCTGACCAGGG
CCTCTACTGCCGGGCACCCGGCGCTCATCAGAGCATGAGACGACTTGGAT
ATCGTAGGTGTCAAGGGATATTACGCCGCCTAGACCCATCGATTTCCAGA
GCTGGATTTCTCCACGACGAAGAGGGTGTGTAAATCAAGTCAAGATGTAC
TACGTTTTCGGAAAGCTCTCGACGAGATGGTTCAGGCGCCGCCGTGTCCG
GCACCGCCGCTCTACTGCCTGCTGTGGAGTATTGAGGGTTGAAAGCGGTT
CCGCGGGTGTGGTGTCTTTCGTCACCTGCGGTACCGTGTCACGCGATTTC
GCCAGCTTCACTTTTGCGACCTTCTACACGGGACGACTACTGTCATTTTT
TTTTTTGCCATCCCATTTATACTGCTGTACAGCAGTTTTTATTACCCTAC
CCTGTTGCTGCATCCAACGGACTCCTTTTTTTTTTTCGCATTGGCACCTC
TACCCGCAAATTTTAACTCTAGGATGAACTGGCGGTCGATTCGTTGTGAT
TTTCTACCAGTAAGTACCCCGTCGCAACTGATGCATTTTTTTTTTGCCAA
TGAAACTGGCAAAACATTGGTTTTCGTCTGTCTGGTACTGACTTGTTTTG
TAAATCGGTTGGTACATCCGTTTCATGCACCGGCCCGCGCACTTGCGGGC
ACGTTATCTACATCCCCAACTGAAGTACCAACCCGGCTGGCGGTGATTGT
TGTTATTTTACAACTTTTATCACGTAATATGTTCATTTTGTCCCTCAAAA
ACGCAACAACACGCACTCCTATGCGTATACTGTATCCCCCAAAAAAGACC
GTCTCAGAACAAGAAGGAGTGTTCAGGGTCGACGTTTCATAGTGCGCGTT
CGTTTCGTGTTCTGAAAACCCCGCGCACCCCTATGCCTATTTCACCCCCA
AGGTTCATCTTGTAATGCGTTATCATTTCGTGCCGTAAAACCTCGCACCC
ATACGCCTATTTTCCCCAACCCCCAAAAAACACCGCCTCACAACAAGAAG
GAATCCACCGGGTCGACCTTTGGTTGTCTTGTGGTCCACAACCCCGTACC
CCTATGCCTACATCCCCCCGGAATACACCGCCTGAGAACAAGAAGAATTC
CACCGGGTCGACCTTTGAATATCTCGTGTCCTTAAACCCCTCATCACGAT
ACCTATATTCCCTCCCCAAGAAACACCGCCTCAAAACAAGAAGGGTTCCA
CCGGGTCGACGTTTCGCTGTGTTGTCCTCACAACCCGCACCCGTACATAT
GCCTATACCCCCCCCCCCCCCCCCCCCGCCACCCCCCCCAAAAAAACGCC
TCAGAACAAGGAGGAGTTCACCGGGTCAACCTTCCAGTTCTTCATGAAAG
CTGCGGAGGGGCTGAAGGACGCAGACTGGGCGTTGGAGCTCCACGAGCAG
TCCCTCAAGGGCAAGAAGAAGCACGGCCGGTGGTTTCACCCGATCGCCCT
GCAGGTCTTGGCTGAAGCAGGAAGACTAGAGGAAGCGTTTGGAATCGCTG
AGGTATGTACGTACCGTAGGGTTGCGTAAGATAACACACCCCCATGGGTC
GATTTTCAAGGCTTGATTACCGTGACAATGAAGACGGAATGTCGACATCA
CAGAACGTGGTCCAACAGCAAGTGTCGGTTCGTGGGTAGAGAGCAAAACG
CGGCGTGACTTCGATGATGCGTGGGACGTGTTCCCCAACGGTCTTGCATC
TCTGAGGTTCCGAAATTAACACAGAGGGCTCCGCTCCGGGAGTAGAGGAA
TAGAGGCAGGAGGACATGGCTGGAATTAAATAGAAAGGAAAATGGCGTCC
GTTGCTGGGAGGGAGGGCTGTCGTTGGGTGGTTCCGCATCTACTGCTGTG
TAGTCATGCGTGAGGTTTGACCTTGGTTTCAGTAGGGGGTACAAGGTGGG
ATCGGGGGCTGGCGATAGGGGTACTAAGCCTCCCTATCTATTTCGTGAGG
TAATATATACAGATTTGCTCTAAATGATACAAGACTCTGTAAAATTAAGA
CTGTGTACAGATTTTTAATTTTTTTTCTCGTGAGGGGTTGTTGAGGTTTG
TTCGACTGTTCGAGTCACAAACACGTGAACTGCTGTGTGAGCTGTTAAGC
TTGGGAACGCCACACCACGGCTGGTAGCCAGCTTTGGGTGGGTCCTTCCT
GTCTGATGTATTTTTCATCTTGTTGCGTCACTCCCCTTGATGACACTGAA
CTCTCATGAGCCCACTCCAGAGGGATTCCTTGTAGGTTAATTACGTTATC
AAATCCTCGCGAAGGGGGCCCTGCTGGGATTTCGTATCCGAGTGAGTTGA
GAGAGTCGTGTCGGAGGAGGTGGCACAAGACACAAGAGTTGCGAAGAAAA
TATCACACGCACTGAAGAACTCACGGCCACGTGAGATACCACATGCATTT
ATTTATTATTTTCTTACTACAGAGAAGACAAGAATCCATCTCTTCCACAG
ATACAGGAGACAGAGTTCCGTGGTAGATTTGCAATTTATTTGAAATATTT
TCTTGCCTTGTGCTGCCATGCCATGCGAACGCGCGAAGACCCTACGAACC
GGTGGCCACCCCAAGCTTCCGCCAACGAGTTACCACGTCCTTTGCCGATG
TTGTAAGCAGCACGGCGAAAAGGAGCTCGTCGTCAAGGTCGTACAGGTTC
GTTGTTGGAGTGAATGCTGCTATTGTTGCTGTTGGTGATGGTGGTGTTGA
TACAAAGAAGAATATTGACCTATTTTGATCGTTTCTTAAGATGTTTGTAT
ATCGGTGCTAGTTTTGTTGATTTCTAGTCATTATGCTCCTGCTGATGGTC
ATCGTTTGGTTGAAAAAATTCGGCCCCTTGGGTGTTGAAATTATCAACCA
CGTCAACGGTTGGCATCACCTGGCCCTTCATCCAGGAGCCATTTTTGTTA
CCTACTACAAGTATTTTTCTTAACCGAAACAGAGGTCAGTTTTTAAGAGG
TATTCCACACCGAAACCGTTGCAGCCCAAGAAACTAAAAAAGACGAAAAA
CGCCTTCTTCCTTCGTTCGACTCGGCAGACCATGCGTAAGGGCACGATGA
GCCTGTACTTGCCACCCCCAGACGTGCTGGACTTCGTGGTCGAGGCCTTC
ATTGAGAGGGGAATTCCGGGCGAGGTGTTGACCTTGTTCGACAGGATGCG
TGCGCAGGTGCGTTTGGGACGGCAACGTTGCGAGCCAGGGGTTTCGTATT
TTTTGGAGGCGCCCCGCCCCCTCCACACGTTTGTGTGTCGCTATTTGGGT
AGCTGGGATGCCCAATCATCCCGTGGGGTTTCTTGTGTTTCGATGGCGGC
GGTTTTTACCGCAGCCTGGTCGGGTGAAAACCCGGCCTGCTCCGTCCCGG
ATTCGTAGGGATGCGAGGTAAATGGTGTAACGACTGTGGCATGCACGGCT
TTTAGTGCCCCCTGTGTCGCTGTTTCGTCGGCCGGGATACCCAATCAACC
CATGGCCAATCTGCTGTGTTTGGCACAGCGAACGCTGGGAGGATGGTGAC
CAGGTTCTGGTTCATCATTGTGAAGCTTAGCCTGGGCCGCCGAAAACGCG
CACATCGCTCCTCAGTCCCGGCATTGTTTGTAGGGATGCGAGGTCAATGG
TGAAGCGACTACGGCGTACGTTACATCAACACACGCACACCATGCAGCTA
ATTGCGAGAGTCACATCGGCGGTGCTATTGGTGGTGGTGTCTTTGTTGTT
GAGGTTTTGGGGTTTGGCAGGTTACGATGGTAGCGATGGCCGTGGTTTGT
TGCGCGGTAAGCTACATGCGTAGTTTTCTGACAAACAAACACACAAGTTT
TTTAGCCACCTTTGGCAATAGTAGGAAGAAACGATTGGCCATCAGCAATC
GGTTCTGTGGGAACAATACTCCGTCCTCTCGAGGACGCGTGATCGATGGT
CCAACAACAAAGGCAAGCAAAAAATGAGAATACCCCCCCCCCCCCCCAGT
ATACCAAGTATACTAACGGCTACCTCATGCTAACATCAGTCCCCCACACA
CATACACATCTTGGCCGCTGTCACCCCCACTACCGTCCGCACGTGCCCGC
AGCGAATTCAGCCCAACCCGGAGGTATACGTCCTCCTTGCCGATGCAGCC
GTGGCGGCTAACGACCTCCCCCAGACGGTCCACTTCGCGGAGATGGCTGA
GAAGGGCGGCCGGAAGGCCAGCGCGGGAGCGCTTGCCTTCACGCAGAGCA
ACGCGCCTCCACGAGAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6441:177..4846+

>mRNA_Ecto-sp13_S_contig6441.17209.1 ID=mRNA_Ecto-sp13_S_contig6441.17209.1|Name=mRNA_Ecto-sp13_S_contig6441.17209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6441:177..4846+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCTGTGGTGCAGCAAAGGGAGGGAGTGCTGTTCGGAAAGTTTCA
CAAGCCACCGCTGCTGTCGACTTTGGTGGCGTTAGGGAGGTTCGAGGGGG
CAAGGATGGAGTGGAGACAAGCCACCTGGATGAACAAGGAGGAGTTCACC
GGGTCAACCTTCCAGTTCTTCATGAAAGCTGCGGAGGGGCTGAAGGACGC
AGACTGGGCGTTGGAGCTCCACGAGCAGTCCCTCAAGGGCAAGAAGAAGC
ACGGCCGGTGGTTTCACCCGATCGCCCTGCAGGTCTTGGCTGAAGCAGGA
AGACTAGAGGAAGCGTTTGGAATCGCTGAGACCCTACGAACCGGTGGCCA
CCCCAAGCTTCCGCCAACGAGTTACCACGTCCTTTGCCGATGTTGTAAGC
AGCACGGCGAAAAGGAGCTCGTCGTCAAGGTCGTACAGACCATGCGTAAG
GGCACGATGAGCCTGTACTTGCCACCCCCAGACGTGCTGGACTTCGTGGT
CGAGGCCTTCATTGAGAGGGGAATTCCGGGCGAGGTGTTGACCTTGTTCG
ACAGGATGCGTGCGCAGCGAATTCAGCCCAACCCGGAGGTATACGTCCTC
CTTGCCGATGCAGCCGTGGCGGCTAACGACCTCCCCCAGACGGTCCACTT
CGCGGAGATGGCTGAGAAGGGCGGCCGGAAGGCCAGCGCGGGAGCGCTTG
CCTTCACGCAGAGCAACGCGCCTCCACGAGAATAG
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