mRNA_Ecto-sp13_S_contig6437.17197.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6437.17197.1
Unique NamemRNA_Ecto-sp13_S_contig6437.17197.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6437.17197.1 vs. uniprot
Match: A0A6H5KRC5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC5_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 5.380e-66
Identity = 179/298 (60.07%), Postives = 188/298 (63.09%), Query Frame = 2
Query:    2 GDALAAEEGGPEGARSIIGSGAEPCAAEDXXXXXXXXXXXXXXXXXXAGLPGLLREEEMERAYEIFCGGEELTFQRFLTGIGVLG-------GLT--------------------------------REGRVGLFKFIYSML----EGRRPRPLPRQELETFVRRLRP-------------------DLTE-------------------KATRRLFDKTAELRGGGDVTREGFLAFAEQNGSILSVYQAMLLNDILGVERDIVEFGVAAGEDFGGLAVDTTELERTLDELVGPTALV 652
            GDALAA+EGGP+GARS IGSGAEPCAAEDXXXXXXXXXXXXXXXXXXAGLPGLLREEEMERAYEIFCGGEELTFQRFLTGIGVLG       G+                                 RE R  L   +  +L     GR            + R  +                    + TE                   +A RRLFDKTAELRGGGDVTREGFLAFAEQNGSILSVYQAMLLNDILGVERDIVEFGVAAGEDFGGLAVDTTELERTLDELVGPTALV
Sbjct:  570 GDALAAKEGGPDGARSTIGSGAEPCAAEDXXXXXXXXXXXXXXXXXXAGLPGLLREEEMERAYEIFCGGEELTFQRFLTGIGVLGLRYLVVAGVHLVRLVRGQEEAAAHVVVVKAALPPKHNPHRHGREHRRHLLDVLRGLLVTEFRGRHRXXXXXXXCRAWGRGRQGVDARGEGGTVQVHLFYVGGEATETSSAARAGDFHPAASTRPYRAARRLFDKTAELRGGGDVTREGFLAFAEQNGSILSVYQAMLLNDILGVERDIVEFGVAAGEDFGGLAVDTTELERTLDELVGPTALV 867          
BLAST of mRNA_Ecto-sp13_S_contig6437.17197.1 vs. uniprot
Match: D7FLI2_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI2_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 8.920e-61
Identity = 120/132 (90.91%), Postives = 124/132 (93.94%), Query Frame = 1
Query:  226 EILDGHRGARGIDTRGEGGTVQVHLFYVGGEATQTSSAARAGDFRPAASTRPYRESDEEALRQDGGAEGRRGRYAGRLLGLRRAKRVHPQRVPGHAAQRHLGRGARHRRVRGCCGRGLRRARRRHDRARAHP 621
            +ILD HRGARG+D R EGGTVQVHLF VGGEAT+TSSAARAGDF PAASTRPYRES EEALRQDGGAEGRRGRYA RLLGLRRA+RVHPQRVPGHAAQRHLGRGARHRRVRGCCGRGLRRARRRHD ARAHP
Sbjct:  645 KILDRHRGARGVDARREGGTVQVHLFDVGGEATETSSAARAGDFHPAASTRPYRESGEEALRQDGGAEGRRGRYARRLLGLRRAERVHPQRVPGHAAQRHLGRGARHRRVRGCCGRGLRRARRRHDGARAHP 776          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6437.17197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRC5_9PHAE5.380e-6660.07EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FLI2_ECTSI8.920e-6190.911-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6437contigEcto-sp13_S_contig6437:1019..6880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score230.7
Seed ortholog evalue6.2e-58
Seed eggNOG ortholog2880.D7FLI2
Preferred nameLPCAT2
Model size2347
KEGG rclassRC00004,RC00037
KEGG koko:K13510,ko:K13512
KEGG ReactionR01318,R03437,R03438,R04413,R04480,R09035,R09036
KEGG Pathwayko00564,ko00565,ko01100,map00564,map00565,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001654,GO:0001775,GO:0001894,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005811,GO:0005886,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006656,GO:0006658,GO:0006663,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010563,GO:0010604,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016407,GO:0016411,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019216,GO:0019220,GO:0019222,GO:0019637,GO:0030141,GO:0030258,GO:0030659,GO:0030667,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0035577,GO:0036148,GO:0036150,GO:0036151,GO:0036152,GO:0036230,GO:0042119,GO:0042171,GO:0042175,GO:0042176,GO:0042582,GO:0042592,GO:0043010,GO:0043129,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045055,GO:0045321,GO:0045732,GO:0045833,GO:0045936,GO:0046469,GO:0046470,GO:0046471,GO:0046473,GO:0046474,GO:0046486,GO:0046890,GO:0046903,GO:0047144,GO:0047159,GO:0047184,GO:0047191,GO:0047192,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048871,GO:0048875,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0060041,GO:0060249,GO:0060255,GO:0061024,GO:0065007,GO:0065008,GO:0071071,GO:0071072,GO:0071617,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090407,GO:0097164,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099503,GO:1901564,GO:1901566,GO:1901576,GO:1903725,GO:1903726,GO:2001245,GO:2001246
Exons4
EggNOG free text desc.1-alkylglycerophosphocholine O-acetyltransferase activity
EggNOG OGsCOG0204@1,KOG4666@2759
EC2.3.1.23,2.3.1.67
Cds size624
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463889.1357908-CDS-Ecto-sp13_S_contig6437:1018..12731681463889.1357908-CDS-Ecto-sp13_S_contig6437:1018..1273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6437 1019..1273 +
1681463889.1544662-CDS-Ecto-sp13_S_contig6437:3087..32201681463889.1544662-CDS-Ecto-sp13_S_contig6437:3087..3220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6437 3088..3220 +
1681463889.1680443-CDS-Ecto-sp13_S_contig6437:4056..41731681463889.1680443-CDS-Ecto-sp13_S_contig6437:4056..4173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6437 4057..4173 +
1681463889.1857963-CDS-Ecto-sp13_S_contig6437:5038..51571681463889.1857963-CDS-Ecto-sp13_S_contig6437:5038..5157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6437 5039..5157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463889.1958926-UTR-Ecto-sp13_S_contig6437:5157..68801681463889.1958926-UTR-Ecto-sp13_S_contig6437:5157..6880Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6437 5158..6880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6437.17197.1prot_Ecto-sp13_S_contig6437.17197.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6437 1019..5157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6437.17197.1

>prot_Ecto-sp13_S_contig6437.17197.1 ID=prot_Ecto-sp13_S_contig6437.17197.1|Name=mRNA_Ecto-sp13_S_contig6437.17197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
RRRSCCRRGGTRRRKKHYRERRRTVRRGGRGRVGGRDGGSRSRSGGGGGA
ARASPGGGDGEGLRDLLRRGGADVPEILDGHRGARGIDTRGEGGTVQVHL
FYVGGEATQTSSAARAGDFRPAASTRPYRESDEEALRQDGGAEGRRGRYA
GRLLGLRRAKRVHPQRVPGHAAQRHLGRGARHRRVRGCCGRGLRRARRRH
DRARAHP*
back to top

mRNA from alignment at Ecto-sp13_S_contig6437:1019..6880+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6437.17197.1 ID=mRNA_Ecto-sp13_S_contig6437.17197.1|Name=mRNA_Ecto-sp13_S_contig6437.17197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5862bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6437:1019..6880+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGACGCTCTTGCTGCCGAAGAGGGGGGACCCGAAGGCGCAAGAAGCA TTATCGGGAGCGGCGCCGAACCGTGCGCCGCGGAGGACGAGGAAGAGTTG GAGGAAGAGATGGCGGCAGCCGCAGCCGCAGCGGCGGCGGCGGCGGGGCT GCCCGGGCTTCTCCGGGAGGAGGAGATGGAGAGGGCCTACGAGATCTTTT GCGGAGGGGAGGAGCTGACGTTCCAGAGATTCTTGACGGGCATCGGGGTG CTCGGGTGAGGAGGCGGGTGGGAGCGGGGTGGGGGTGATGAAAATGCGCT TACTGGGAAGGGGGTGCGTGTGAAAAGGCGATTGCGGAGAGGGGACGTGG TTTTCGTGATCGCTCAGGGCCGTTCAGGGCGACCTATGTGTTTGCAACTG CTAAACGATCGGGTTGTGGCGTGCCGAAGGACTAGTGATGGTGCTAAAGT GGGAGATATCCTCAAATTTTACAAGTTTGGGTTTTGAACATGGAGAGGGA GGTATGACGGGCGTGCATTGCTTGCGGTATGGAGCACTGTCAAGTCATGC CATGCTCTTTGCTACGTGTAACTAAAATTTTTGGGTCACTGGAAAAGAAT GTTGGCATCGTTTGACCCCCTGTGCGGGACTCCGATTTATGGGAACAAAA TCTTGTCGACAACTCTTGATCTTGGCCAAGATCTGCCAGTTTCACGATTT ATGGGAGCAAAATCTTGCTATGTATCTTGGCCAAGATTTCTCGAGGCCCG AAATCTGCTCTTTCGAACAAATTTTGACCCAAGATCTGTCGAAACGAGCC TTCCGACAAATCTTGAGGCGGCGTAACAAATACTCCGAGTATTGCCTGGG TGCGGCGCGATCACCGAAGGTCAGTCAAGCTAATCGTCCTTAACGCATGG AATCTGCACGTGGCACACTCGCAAGGGTCTTCAACGCACCCTGGCGTCGC TGTATCGGCGCCCGTGGCGCCGACAGCGAACGGAAACGACCAAGGCGCGC CAAAAAAATGCTTATCTGCCCTGGCTCGTTCCACGTACGTCATCGCCAGT CTGTCGAGGGACCGTTCAAAGAGTACTTTTATTTTCAAGTAGAAATATAG AGGAGGAGGAACGCTTTTGCCAACACAGCTCTGTCGTGTGTGACGCTTCT ATCTCTTCATCGAATCATCCCACACCCAATCCGTTTGCACCTGAGCCAGA TCCGTGAATGCAGATGACAGCGCCGGAGGTTTGACCTCGGTACGCCTGGT ACATAGCGAGATACGTGCACGGGTGTCATCAGCTTCGGGTTGATGCACTT TCTTGTCAATTGGACAGCCATGGAACAGTTTTGTTTCTCCGCTTGACATG AACTCGTAGGCAACGGCTTTTTTTTTGCATCCCAGGTAGGCACCCATCGC TAGTATCCACCCATAATGTTGAAGCAACACAGCTGGGGGAGGGACACCCC TTCTACAACTGCGTCATGGTCACCTTTCGCCACACGTTGGCATTTTCTGT GGACCAAGTGGCTGTTGTGCTTTTATCAACTTCAAGCAGAAGAGAGGAAC AACTCGCCGCTTTTTCAACATTCAACATATTCCCCCATAAATCGCGATGC TGCAAATCTTGGTGGAGATCTGTTGTGAGCAAATCTTGGGTCAAAATGCC GAGATATATTTGTAACATTCTGTTTCCATAAAGAAGAGTCTGATCTTCGT TGCTGGTCTGTTGCCTGCTTGCTTGCAGATTCATCCCGCAATGTATGCGT GTTCTCGATTTCTCCGCTCAAGTGGTGTTTCCATACACGAGTGTTTTGTT CTGTTCCTACAGAGAGCTCGAAGGCTCGTCCTTGTGAAGTTTCTTTCGCA CGCAGGGGGAAATGCCGGTGACTAACTTGCTTTTTCCCAAGTGCCGCTGA ATCTCCCCCTGCCTCCCCCCCCCCGCTTTCCATGTATCAGCCTAAAATGC CTCTCGAGGACGCGTGGTCAATGGTCTAGCAACTAGGGCTGAAAAAAAAA TAAGTACGCCCCCCCTCCCTCCCACGATGGACGCCTTTCCCAACCGCATG CACACCTATGATGCCGCAGGGGATTGACACGCGAGGGGAGGGTGGGACTG TTCAAGTTCATTTATTCTATGTTGGAGGGGAGGCGACCCAGACCTCTTCC GCGGCAAGAGCTGGAGACTTTCGTCCGGCGGCTTCGACCAGACCTTACAG AGGTTAGCTTGTTTTTGTCTCGGCAGAACTTTTAGCGAGTGACCCCTTTG TGTCGGTTGTTGTTGTTCCTCTCTTTGCCTGCGCACGATCAGTGTGACGT CTGACATCTTGTTGCCTTTGTTTTTTTGTCTCCGGAGAACTTACAGCGAG TAGCCCCTTGCCTCCCCGCCACCGGTGACGTCTGGCTGGCTGGGGTTACT CAATAACACAATGGTTTAGCGCGATAGTCGCTTCGGCGAAGAAACCCTAG TGGCGGCACCGCTAAGATTTTTTTGGTTGGAGGATTTGGTTGAGTGACGG CCGACAAAAATACGCCCCCCTACAGCCAGCCCACCCGACATTGCGCCTTG TTCAGCGGAAACCACCCCCTGTCGTTTGATGCTCTGTGGCGAGTGAAACC TTGCTGTGTTCGATGCACCCGAGCGGTTGTTGCCCCACCAGACTATGTTG GTGCTGCGTTGGAGGCGTGTTGTGCACTCAAAGTTGGGCGACTGGGAGAG GCACCAGGCCTTTGGTCGTAACGTACGAGAGGGGCGCGCTCCTCCGTAAA TTTGCCCTTTTGTCTCAAATCGGCTCGACTATTAGTGAAAAGCTGTTGGT AAACGCCGTTGAGCTATCAGCAAGCAATAATGAGAGCTGTTGGCACGGTA TACACAGAGAACATGTTGGACATGTCCGTAGAAGCAACGGTGGATCCCCT CTACCCGCCTGTCTCTTCCCTTTTCTGCAACGAATGCTCACGTTTTCGTG TCGTTGTCTCCTCTGTCGCTGTGTAATCGTTGCCTCCCTCCTTGGTGCTG GAAATGCTTGTTTTTCGAACGGTGTTCGACGGCGGCAGAAAGCGACGAGG AGGCTCTTCGACAAGACGGCGGAGCTGAGGGGAGGCGGGGACGTTACGCG GGAAGGCTTCTTGGCCTTCGCCGAGCAAAACGGGTCCATCCTCAGCGTGT ACCAGGTGCGTGTGTGGTGTCTGTGTTTGTTGTTGGCATGGACTACGCTA ACCGGTAGACCAATGAAAAGAGGTCAGTCTCGAGCGTGTGTGAGTGTTGG GTTATTGACATGGATCGCGCTAACCGGCCGGCCAATGAATCCGCGTCAGT CTCAGTGTGTGTTTGGGGTGGCCACGCTAACCGGCTGATCAATGAATATA CTCCAGATTCAGTGCGGCTGAGAACGGAAAATGCTATGGAAGGCCATGAT CAGTATGTGTGGAGGCCCCATTGATGTTGTTGTGATGCCGTCATCCACGC CTCGCGTCCGCTGCTCTAACCGTGATGCGGTGTTCGTGCGCAGTGATGGG CTCGATACCTCTAGGTGTGATGTTCGGTTGGGAACTTAGGGCCGACATGC GGGTTGGCTGTGGGAATGAATATTCAGGGCGAGGGGCGGACACCTTGCTT CGATTTTTCTTCTCTCTGTGTTTTGTTCGATCGACTTTGGATTTTCATGC CGGTACCAATCGTAAACAGTTTGACCTTTTTTGGGCGTTGTGTTCAGGGG GCAGTTTCTTCGTCCGCGACGTGATTGCTCCCCGGCAACGTCGGTGACGC AAGCAACCTAGTTAGTCGCGAGTCGCGTTTACTCTTTCGTCGTTGGTCCA AGCCCCCCCCCGCTCGCGCCCTCACCCACGAGTGGTGTCCACCTCGAGAC ACGATGATTATGATATCAACCACGGCGTACGCCCAAGCCCAATGTTTTTG GGCGTCCAAGGGTTCAACTTAACAATTTCCCACCCCTCTTCTTTTCAAGG AACGTGTTTGGACACGATGTTTGTTAGGTCTTGACGCCCCCTCCCCCATT CCCCCCTCCGCTCATTGCAGGCCATGCTGCTCAACGACATCTTGGGCGTG GAGCGCGACATCGTCGAGTTCGGGGTTGCTGCGGGCGAGGACTTCGGCGG GCTCGCCGTCGACACGACCGAGCTCGAGCGCACCCTTGATGAACTCGTCG GCCCAACCGCCCTCGTTTAACGCTCGCTCGTGTCACGCTCGTGATGCGCC CCCCCCTCACTCTCCGTGCCTGACTGTTTGAAGAGATTCCCGACCAGCTC GTACGGAAGGGCTGGGGTGCAGCCTGTACGCTGGGCGACGGAGTCGGCCG GCGGCCGATTGGCGCCCTTGCTACTGGTGTTTTGGGGTCCCGCCTGGCTG GCGTCTGGCCTTACGAGAGCTAGTGAACGCTGCCGTGGGGCTGGTTGGAC ACCATTTAGGCGGCGGCCGGCGGCGGTGGCGCGCGTGACAAGCGGCGTGA GATTTTGGTGGGTTCGCCAACGAAAGGGGGGCGGGACAGCAGTGAGCGGT GTTGGTGCTGGCGGCGGAAGTTGTAGCCTCAGTAGCCCCACACGGCTGCA CGGGCTGCTACATTGGGGACACTACTATTATTGTGAGAGTTGGCCATGCC ACGTTGCGGGCGTCCCAGCCGTCGAGCGCGAAGCTGGGCAGCGCATGCCG TACGCGGCAAGTGGGGGAGCCATCTGCTGCGTGTTTTTGTTGATGATGTG GTTTTTTGCCCCGTCGTTAGGATGGCACGGCAAAAAATCTTGGCAAACCC TGAGATGTTGTACGGGGTGGTGTGCCAACTGGTTTTTCATGCGAGACAGG GAGGTGGTAGGTTCGTTGTGGCAGGGCCGTTGCCTTCGGGCGTTTGTTTG TAGCACGTGCTCACCATACCTCCGCCGTAGAGCTACCGAAATTCGGATAA ACGGGGTGAGCTGGCGAAATTTCGGACTACAAGAGTTGCATCGCAGCCGT GTGAAATCAGTGGCCGTTGTAGGAGTGTGAATGTTTGCAGTTCAGTGTAA GCTTGTGGTGTATGTTGTGGGTACACGATTTGGTAGTTGTTCGTAGGACT TGAGGCGGGACAGCAGCTGCTATAGAGTTTTGTGTGGGGCGCGCTGCATT GCTTGCTTGGTTTTATTCTTAGCCTGTCTTGTGTGTTGGGTTCTACAGCA GTAGTACCGCTATTGGTAGTACTGCCTTCCTCTGCGACAAATAGTTTCTG GCGTTAGAACGAAAACCGGTGCTTGCCGATGTCGTAGAGACGTTGTGGTG GTGAATACCTCGGTGCTCGGACAGCTGTTTTGTCAATGTACGTCGAAAGA CCTAAATCAACGCAGTAGTCTAGACATTGAGGAATAAACCTTCCAAGAGT TTTAATTACATTTTTCTCTTATCATCCAGCATGTCGCTCGGAGGGGGGTA GCATGCTCTCTTGCACCACGGGCCCCCAGATGAAAATAACGTTTTTCGAT TTTTTTTGTAGAAGGAGCTGGATAGACACCCAAGGACAGACCCTAAATTT TTCCACGAAGCTCAAGCAAGTTGGTCTAGTTAAGGCACCTCAGCAATGGA TCGTACGTTAAACCCTACACATCAGCATGTGCTCCACACATGGCGACTGA CAAGAACGAAAAGCTTCTGATACAACATCCGGAGTATAATTGAATGTGCG CCTCCGCCCGATTTGACTTTTCTTGTGTATCTCAGGGCCCCCGTTCCATT GTTGCACAAACCTCGGCGGGTAGAGGGGCAAAACCACTGAGAATGGCGGC TTTTGCTGCGGTTGACATCGTTGGCGATGCACGTGGTTGCTGCTGCTGCT ACTTGTGGCGCTGCAATTGGTCAGCATGCGAGGAGAACCTCCCACACGGT AGGCGACGTGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6437:1019..6880+

>mRNA_Ecto-sp13_S_contig6437.17197.1 ID=mRNA_Ecto-sp13_S_contig6437.17197.1|Name=mRNA_Ecto-sp13_S_contig6437.17197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6437:1019..6880+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGACGCTCTTGCTGCCGAAGAGGGGGGACCCGAAGGCGCAAGAAGCA
TTATCGGGAGCGGCGCCGAACCGTGCGCCGCGGAGGACGAGGAAGAGTTG
GAGGAAGAGATGGCGGCAGCCGCAGCCGCAGCGGCGGCGGCGGCGGGGCT
GCCCGGGCTTCTCCGGGAGGAGGAGATGGAGAGGGCCTACGAGATCTTTT
GCGGAGGGGAGGAGCTGACGTTCCAGAGATTCTTGACGGGCATCGGGGTG
CTCGGGGGATTGACACGCGAGGGGAGGGTGGGACTGTTCAAGTTCATTTA
TTCTATGTTGGAGGGGAGGCGACCCAGACCTCTTCCGCGGCAAGAGCTGG
AGACTTTCGTCCGGCGGCTTCGACCAGACCTTACAGAGAAAGCGACGAGG
AGGCTCTTCGACAAGACGGCGGAGCTGAGGGGAGGCGGGGACGTTACGCG
GGAAGGCTTCTTGGCCTTCGCCGAGCAAAACGGGTCCATCCTCAGCGTGT
ACCAGGCCATGCTGCTCAACGACATCTTGGGCGTGGAGCGCGACATCGTC
GAGTTCGGGGTTGCTGCGGGCGAGGACTTCGGCGGGCTCGCCGTCGACAC
GACCGAGCTCGAGCGCACCCTTGA
back to top