mRNA_Ecto-sp13_S_contig64127.17177.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64127.17177.1
Unique NamemRNA_Ecto-sp13_S_contig64127.17177.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64127.17177.1 vs. uniprot
Match: UPI00141FD77A (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00141FD77A)

HSP 1 Score: 476 bits (1226), Expect = 4.640e-168
Identity = 236/251 (94.02%), Postives = 241/251 (96.02%), Query Frame = 1 
Query:    1 DRLFRIAQAVAAVDCYRARVTARRPEPGGDTNSVNRVCWSRLHPFLMARLTQCLQANAVQSLVCCAISGRVADKWMPAAEMSRQLEHELVDSGLFSSVEVSLDLRLPVPGGRTWLAGETEKTVAAIRESLARRQPVLVEILRDPVTSPAAAQIVVVYRLEEPADNKAMLTYYDPALATAPGSLRIAKTDYGFVFHDVPSQAAPDSDAPESEDRAAAQGLHLLAVPPAPPPLFGARRWLRWCLPWGLCWYLK 753
            DRLFRIAQAVAAVD YRARVTARRPEPGGDTN VNRVCWSRLHPFLMARLTQCLQ NAVQSLVCCAIS RVADKWMPAAEMSRQLEHELVDSGLFSSVEVSLDLRLPVPGGR WLA ETEKTVAAIR+SLARRQPVLVEILRDP TSPAAAQIVVVYRLEEPADNKAMLTYYDPALA APGSLRIAKTD+GFVFHD+P Q APDS+APESED+AAAQGLHLLAVPPAPPPLFGARRWLRWCLPWGLCWYLK
Sbjct:   74 DRLFRIAQAVAAVDYYRARVTARRPEPGGDTNPVNRVCWSRLHPFLMARLTQCLQTNAVQSLVCCAISSRVADKWMPAAEMSRQLEHELVDSGLFSSVEVSLDLRLPVPGGRIWLAAETEKTVAAIRKSLARRQPVLVEILRDPATSPAAAQIVVVYRLEEPADNKAMLTYYDPALAAAPGSLRIAKTDHGFVFHDMPGQVAPDSEAPESEDQAAAQGLHLLAVPPAPPPLFGARRWLRWCLPWGLCWYLK 324
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BLAST of mRNA_Ecto-sp13_S_contig64127.17177.1 vs. uniprot
Match: UPI001872A6E2 (hypothetical protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001872A6E2)

HSP 1 Score: 168 bits (426), Expect = 3.450e-47
Identity = 105/252 (41.67%), Postives = 138/252 (54.76%), Query Frame = 1 
Query:   16 IAQAVAAVDCYRARVTARRPEPGGDTNSVNRVCWSRLHPFLMARLTQCLQANAVQSLVCCAISGRVADKWMPAAEMSRQLEHELVDSGLFSSVEVSLDLRLPVPGGRTWLAGETEKTVAAIRESLARRQPVLVEILRDPVTSPAAAQIVVVYRLEEPAD------NKAMLTYYDPALATAPGSLRIAKTDYGFVFHDVPSQAAPDSDAPESEDRAAAQGLHLLAVPPAPPPLFGARRWLRWCLPWGLCWYLK 753
            +A A+AA D +R R+   R E GG TN  NR  W +L P+L+AR    L A   ++L   AI GRV D W+PAA+++R L+ EL  SGLFS VEV+L+L  PV GG  W+A +   T+A +R  L  R+P LVE++RD     AA Q  V YRLE+          +  L ++DP    A  SLRI   D      + P        APE+   AA + L L+ + P  PP FG RRW R   PWG  W+LK
Sbjct:   79 VALAIAAADYHRERLPVPRAEVGGITNPRNRPVWEKLRPYLVARCRAALAAQGAEALQWRAILGRVPDNWLPAAQLTRALQQELNASGLFSEVEVTLELNPPVAGGGRWIAMQCRGTLAELRRRLPAREPCLVELIRD--AEDAAPQWAVAYRLEDELSLGRDGVERVRLWFHDPRRGGAEVSLRITLADDRIQAVETP--------APEAG--AAVKALRLVKLEPGEPPRFGWRRWFRRAHPWGAFWWLK 318
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64127.17177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00141FD77A4.640e-16894.02hypothetical protein n=1 Tax=Pelagibius litoralis ... [more]
UPI001872A6E23.450e-4741.67hypothetical protein n=1 Tax=Pelagibius sp. NBU259... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64127contigEcto-sp13_S_contig64127:5..757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size753
Hectar predicted targeting categoryother localisation
Exons1
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463887.1505566-CDS-Ecto-sp13_S_contig64127:4..7571681463887.1505566-CDS-Ecto-sp13_S_contig64127:4..757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64127 5..757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64127.17177.1prot_Ecto-sp13_S_contig64127.17177.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64127 5..757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64127.17177.1

>prot_Ecto-sp13_S_contig64127.17177.1 ID=prot_Ecto-sp13_S_contig64127.17177.1|Name=mRNA_Ecto-sp13_S_contig64127.17177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
DRLFRIAQAVAAVDCYRARVTARRPEPGGDTNSVNRVCWSRLHPFLMARL
TQCLQANAVQSLVCCAISGRVADKWMPAAEMSRQLEHELVDSGLFSSVEV
SLDLRLPVPGGRTWLAGETEKTVAAIRESLARRQPVLVEILRDPVTSPAA
AQIVVVYRLEEPADNKAMLTYYDPALATAPGSLRIAKTDYGFVFHDVPSQ
AAPDSDAPESEDRAAAQGLHLLAVPPAPPPLFGARRWLRWCLPWGLCWYL
K
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mRNA from alignment at Ecto-sp13_S_contig64127:5..757-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64127.17177.1 ID=mRNA_Ecto-sp13_S_contig64127.17177.1|Name=mRNA_Ecto-sp13_S_contig64127.17177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64127:5..757- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGGCTCTTTCGGATCGCGCAGGCCGTCGCGGCGGTCGATTGCTACCG
GGCGCGCGTCACCGCGCGGCGGCCGGAACCCGGCGGCGACACCAATTCGG
TGAACCGGGTCTGCTGGTCCAGGCTGCATCCCTTCCTGATGGCGCGGTTG
ACGCAGTGTCTTCAGGCCAATGCCGTGCAGTCGCTGGTCTGCTGTGCGAT
TTCCGGCCGAGTGGCGGACAAGTGGATGCCGGCGGCGGAAATGAGCCGAC
AGTTGGAGCATGAACTGGTCGACAGCGGCTTGTTCTCCAGCGTCGAAGTT
TCCCTCGACCTGCGGCTGCCGGTGCCGGGCGGCCGAACCTGGCTGGCTGG
CGAGACGGAAAAGACCGTTGCGGCGATCAGGGAGAGCCTGGCGCGCCGCC
AACCCGTCCTGGTGGAGATCCTGCGCGATCCGGTGACTTCTCCGGCGGCG
GCGCAGATCGTTGTCGTTTACCGCCTGGAAGAGCCGGCGGACAACAAGGC
CATGCTGACCTACTACGATCCGGCCCTGGCCACTGCACCCGGCAGCCTGC
GGATCGCCAAGACGGATTACGGTTTCGTCTTTCATGATGTGCCGAGCCAG
GCTGCGCCCGATAGCGATGCACCTGAAAGCGAAGACCGGGCCGCAGCGCA
GGGGCTTCATCTGCTGGCGGTGCCGCCGGCCCCGCCGCCGCTGTTCGGTG
CCAGGCGATGGCTGCGCTGGTGCCTGCCCTGGGGCCTCTGCTGGTATCTG
AAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64127:5..757-

>mRNA_Ecto-sp13_S_contig64127.17177.1 ID=mRNA_Ecto-sp13_S_contig64127.17177.1|Name=mRNA_Ecto-sp13_S_contig64127.17177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64127:5..757- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGGCTCTTTCGGATCGCGCAGGCCGTCGCGGCGGTCGATTGCTACCG
GGCGCGCGTCACCGCGCGGCGGCCGGAACCCGGCGGCGACACCAATTCGG
TGAACCGGGTCTGCTGGTCCAGGCTGCATCCCTTCCTGATGGCGCGGTTG
ACGCAGTGTCTTCAGGCCAATGCCGTGCAGTCGCTGGTCTGCTGTGCGAT
TTCCGGCCGAGTGGCGGACAAGTGGATGCCGGCGGCGGAAATGAGCCGAC
AGTTGGAGCATGAACTGGTCGACAGCGGCTTGTTCTCCAGCGTCGAAGTT
TCCCTCGACCTGCGGCTGCCGGTGCCGGGCGGCCGAACCTGGCTGGCTGG
CGAGACGGAAAAGACCGTTGCGGCGATCAGGGAGAGCCTGGCGCGCCGCC
AACCCGTCCTGGTGGAGATCCTGCGCGATCCGGTGACTTCTCCGGCGGCG
GCGCAGATCGTTGTCGTTTACCGCCTGGAAGAGCCGGCGGACAACAAGGC
CATGCTGACCTACTACGATCCGGCCCTGGCCACTGCACCCGGCAGCCTGC
GGATCGCCAAGACGGATTACGGTTTCGTCTTTCATGATGTGCCGAGCCAG
GCTGCGCCCGATAGCGATGCACCTGAAAGCGAAGACCGGGCCGCAGCGCA
GGGGCTTCATCTGCTGGCGGTGCCGCCGGCCCCGCCGCCGCTGTTCGGTG
CCAGGCGATGGCTGCGCTGGTGCCTGCCCTGGGGCCTCTGCTGGTATCTG
AAG
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