mRNA_Ecto-sp13_S_contig6336.17083.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6336.17083.1
Unique NamemRNA_Ecto-sp13_S_contig6336.17083.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6336.17083.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.660e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = -2 
Query:    3 MDNDFVDVFPSAGGVGDSPVKTSAAEEHLNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS 203
            MDNDFVDVFPSAGGVGDSPVKTSAAEEHLNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS
Sbjct:    1 MDNDFVDVFPSAGGVGDSPVKTSAAEEHLNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6336.17083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2L8_9PHAE1.660e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6336contigEcto-sp13_S_contig6336:3489..3722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_010340.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.2371898-CDS-Ecto-sp13_S_contig6336:3488..37221681463878.2371898-CDS-Ecto-sp13_S_contig6336:3488..3722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6336 3489..3722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6336.17083.1prot_Ecto-sp13_S_contig6336.17083.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6336 3489..3722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6336.17083.1

>prot_Ecto-sp13_S_contig6336.17083.1 ID=prot_Ecto-sp13_S_contig6336.17083.1|Name=mRNA_Ecto-sp13_S_contig6336.17083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MDARLEPGTAGDTRASLPPVSAGIESDSPGRDHELPAGLRCSSAALVFTG
LSPTPPAEGNTSTKSLSMLLQARGSGV*
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mRNA from alignment at Ecto-sp13_S_contig6336:3489..3722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6336.17083.1 ID=mRNA_Ecto-sp13_S_contig6336.17083.1|Name=mRNA_Ecto-sp13_S_contig6336.17083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6336:3489..3722+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCCGCCTGGAGCCGGGGACCGCCGGGGACACCAGGGCCTCCCT
GCCTCCTGTATCGGCGGGGATCGAGAGCGATAGCCCGGGGCGAGACCACG
AACTTCCTGCTGGGTTGAGGTGCTCCTCGGCAGCGCTCGTCTTCACGGGG
CTGTCACCAACCCCTCCCGCGGAGGGGAACACGTCCACGAAGTCGTTGTC
CATGCTGCTGCAGGCACGGGGATCCGGGGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6336:3489..3722+

>mRNA_Ecto-sp13_S_contig6336.17083.1 ID=mRNA_Ecto-sp13_S_contig6336.17083.1|Name=mRNA_Ecto-sp13_S_contig6336.17083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6336:3489..3722+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCCGCCTGGAGCCGGGGACCGCCGGGGACACCAGGGCCTCCCT
GCCTCCTGTATCGGCGGGGATCGAGAGCGATAGCCCGGGGCGAGACCACG
AACTTCCTGCTGGGTTGAGGTGCTCCTCGGCAGCGCTCGTCTTCACGGGG
CTGTCACCAACCCCTCCCGCGGAGGGGAACACGTCCACGAAGTCGTTGTC
CATGCTGCTGCAGGCACGGGGATCCGGGGTCTGA
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