mRNA_Ecto-sp13_S_contig6333.17078.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6333.17078.1
Unique NamemRNA_Ecto-sp13_S_contig6333.17078.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6333.17078.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 5.520e-76
Identity = 146/160 (91.25%), Postives = 150/160 (93.75%), Query Frame = 1 
Query:    1 LVAAVRSLRTLSASAVAMEKSVRISSACPNPPSGGGGRGPVSARVGPGGPSASRLVRYLTRECDKVRGITAHPVVERNLDALMSELRSWSAGLGSAAAGGGFSAPAVSTGEVFQSKGVRLLPAGPVGGGTEAGGGATSGRPGGKPLANGGKASLSCGGKA 480
            LVAAVRSLRTLSASAVA+EKSVRISSACP        RGPVS R+GPGGPSASRLVRYLTRECDKVRGIT+HPVVERNLDALMSELRSWSAGLGSAAAGG FSAPAVSTGEVFQSKGVRLLPAGPVGGGTEAGGGATSGRPGGKPLANGGKAS+SCGGKA
Sbjct:  172 LVAAVRSLRTLSASAVAIEKSVRISSACPTXXXXXXXRGPVSVRLGPGGPSASRLVRYLTRECDKVRGITSHPVVERNLDALMSELRSWSAGLGSAAAGGRFSAPAVSTGEVFQSKGVRLLPAGPVGGGTEAGGGATSGRPGGKPLANGGKASVSCGGKA 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6333.17078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1S2_9PHAE5.520e-7691.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6333contigEcto-sp13_S_contig6333:5527..6807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size495
Hectar predicted targeting categorymitochondrion
Exons2
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.0579648-CDS-Ecto-sp13_S_contig6333:5526..58271681463878.0579648-CDS-Ecto-sp13_S_contig6333:5526..5827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6333 5527..5827 -
1681463878.0689206-CDS-Ecto-sp13_S_contig6333:6613..68071681463878.0689206-CDS-Ecto-sp13_S_contig6333:6613..6807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6333 6614..6807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6333.17078.1prot_Ecto-sp13_S_contig6333.17078.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6333 5527..6807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6333.17078.1

>prot_Ecto-sp13_S_contig6333.17078.1 ID=prot_Ecto-sp13_S_contig6333.17078.1|Name=mRNA_Ecto-sp13_S_contig6333.17078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
LVAAVRSLRTLSASAVAMEKSVRISSACPNPPSGGGGRGPVSARVGPGGP
SASRLVRYLTRECDKVRGITAHPVVERNLDALMSELRSWSAGLGSAAAGG
GFSAPAVSTGEVFQSKGVRLLPAGPVGGGTEAGGGATSGRPGGKPLANGG
KASLSCGGKAGPVAG
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mRNA from alignment at Ecto-sp13_S_contig6333:5527..6807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6333.17078.1 ID=mRNA_Ecto-sp13_S_contig6333.17078.1|Name=mRNA_Ecto-sp13_S_contig6333.17078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6333:5527..6807- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTGGCGGCGGTCAGGTCGCTGCGCACTCTGAGCGCTAGCGCGGTGGC
AATGGAGAAGTCGGTCAGGATTTCCTCTGCGTGCCCTAACCCCCCCAGTG
GTGGCGGTGGCAGGGGCCCCGTGTCTGCGAGAGTGGGCCCGGGGGGGCCG
TCGGCGTCGAGGCTGGTGCGGTACCTAACACGGGAGTGCGACAAGTGAGT
TCAGCCGGTTTGTTTTTGTTTACGCCCAGCTGGGGGTGTACTCATCTTCG
GTCAGGCTGTCGTAGCTGGCTGCATTTTTTTGTTGTGGGTGTTTTCTTCG
AGTCAAGCTCCTGCGTGGCGGGTCTCAGTGTGTGGGAGCACGTTTCCTTC
GTCTTGTTGAGAGACGGTACTTGAAAGAAAACGTAGCAATATACCTCCTT
GTTCGACCCCACAAAAATATGCAACTCTTTCTCCGGTTGGTCCGAAGCCG
TCTGAAGTGCTCCCTTTTTTTTTGAGAGAGGTGGTGCAGTGCTGGCGACG
CAGCGATTAGCTCTGGTTGTGTTTTGGTGTCATTTCGGGCATTATACAGG
ACTTCCCGTTCTTCCTTCGGGCCTGTGCCTTTTGTGGGAGACGCCTGGCG
GTTGGCATGATGTTGTGGTTGAAGATCCTGTTCCAGCATGGGAAATAGCG
GTCAGCGCTGTAGGTTCCCTCGGTTTGATCACTTGCGGACGAGACAACTC
TGACAACCCTGAAAGAGACTGATATCACATCGAAACTGTAGGGATGGGAA
AACGTTTTGGAGCCCCCTTTGGCAAAGTAGGAAAGAACGATTGACCATCC
ATCATCGAATAATGCTACGTCCTCGCGTGGTCTAAACATCTAAGGCATGC
GAAACATGAGCACCCGCCCCCCCCCCCCCCCCGACCAATCGGTGATCGAG
TAGTGCTCCGTCTTCTCTCGAGGACGCGTGGTGTAAGCATCCAAGCCATG
TACCCCCCCTCCCCCCCCCCGACCATGCAGGGTTCGCGGGATCACGGCCC
ACCCGGTGGTGGAGCGAAACCTCGACGCCCTCATGTCCGAGCTCAGGTCT
TGGTCCGCCGGGCTAGGCAGCGCCGCCGCTGGTGGCGGTTTCAGCGCTCC
GGCGGTGAGCACGGGCGAGGTTTTCCAGAGCAAGGGCGTCCGATTGTTAC
CGGCCGGGCCCGTCGGCGGCGGCACCGAGGCGGGAGGAGGCGCAACGTCG
GGGAGACCAGGAGGGAAGCCTCTCGCCAATGGGGGCAAGGCCTCCTTGTC
TTGTGGGGGGAAGGCCGGGCCTGTTGCTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6333:5527..6807-

>mRNA_Ecto-sp13_S_contig6333.17078.1 ID=mRNA_Ecto-sp13_S_contig6333.17078.1|Name=mRNA_Ecto-sp13_S_contig6333.17078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6333:5527..6807- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTGGCGGCGGTCAGGTCGCTGCGCACTCTGAGCGCTAGCGCGGTGGC
AATGGAGAAGTCGGTCAGGATTTCCTCTGCGTGCCCTAACCCCCCCAGTG
GTGGCGGTGGCAGGGGCCCCGTGTCTGCGAGAGTGGGCCCGGGGGGGCCG
TCGGCGTCGAGGCTGGTGCGGTACCTAACACGGGAGTGCGACAAGGTTCG
CGGGATCACGGCCCACCCGGTGGTGGAGCGAAACCTCGACGCCCTCATGT
CCGAGCTCAGGTCTTGGTCCGCCGGGCTAGGCAGCGCCGCCGCTGGTGGC
GGTTTCAGCGCTCCGGCGGTGAGCACGGGCGAGGTTTTCCAGAGCAAGGG
CGTCCGATTGTTACCGGCCGGGCCCGTCGGCGGCGGCACCGAGGCGGGAG
GAGGCGCAACGTCGGGGAGACCAGGAGGGAAGCCTCTCGCCAATGGGGGC
AAGGCCTCCTTGTCTTGTGGGGGGAAGGCCGGGCCTGTTGCTGGG
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