mRNA_Ecto-sp13_S_contig6320.17065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6320.17065.1
Unique NamemRNA_Ecto-sp13_S_contig6320.17065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6320.17065.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 5.720e-21
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:  460 IGPKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALHYTDSRRCKERIREAQRREERAAEAQRQLALEKKRNEANRRREQELLDRVDLRARARR 759
            IGPKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALHYTDSRRCKERIREAQRREERAAEAQRQLAL+KKR++ NRRREQELLDRVDLRARARR
Sbjct:  413 IGPKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKRDDENRRREQELLDRVDLRARARR 512
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6320.17065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z2_ECTSI5.720e-2196.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6320contigEcto-sp13_S_contig6320:2..2061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score102.1
Seed ortholog evalue4e-19
Seed eggNOG ortholog2880.D7G7Z2
Model size762
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_009530.1
Cds size762
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463876.7668009-CDS-Ecto-sp13_S_contig6320:1..1201681463876.7668009-CDS-Ecto-sp13_S_contig6320:1..120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 2..120 +
1681463876.783743-CDS-Ecto-sp13_S_contig6320:552..7741681463876.783743-CDS-Ecto-sp13_S_contig6320:552..774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 553..774 +
1681463876.7929237-CDS-Ecto-sp13_S_contig6320:1123..13071681463876.7929237-CDS-Ecto-sp13_S_contig6320:1123..1307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 1124..1307 +
1681463876.8023772-CDS-Ecto-sp13_S_contig6320:1824..20611681463876.8023772-CDS-Ecto-sp13_S_contig6320:1824..2061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6320 1825..2061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6320.17065.1prot_Ecto-sp13_S_contig6320.17065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6320 2..2061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6320.17065.1

>prot_Ecto-sp13_S_contig6320.17065.1 ID=prot_Ecto-sp13_S_contig6320.17065.1|Name=mRNA_Ecto-sp13_S_contig6320.17065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
ASIATVSRLLELGATVNATEKRKQTPLHCACERGRLDIVRFLVEKAGADS
RARAKVMHEPLHVACLGNWGQVVKFLLSEGNVDVEAADKNGMRSLHLAVQ
RNRLEAIRELLKHGCDVEATMPDGLTRPLHMACASGYEKAATLLLDHHAD
IGAIGPKGHRPLHLAAKEERAVIVELLIGRKADLHAKDDRGRDALHYTDS
RRCKERIREAQRREERAAEAQRQLALEKKRNEANRRREQELLDRVDLRAR
ARR*
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mRNA from alignment at Ecto-sp13_S_contig6320:2..2061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6320.17065.1 ID=mRNA_Ecto-sp13_S_contig6320.17065.1|Name=mRNA_Ecto-sp13_S_contig6320.17065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2060bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6320:2..2061+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAGCATCGCCACGGTGTCCAGGCTTTTGGAGCTCGGAGCCACCGTGAA
CGCGACTGAGAAACGCAAGCAGACGCCACTCCATTGTGCTTGCGAGCGGG
GCCGCTTGGACATAGTCAGGTACCCCTCAAGAAGCACCTCGCTTTTTAGC
CAGACGGGAGGTTGGTTGAAGAGTCTAGCGATGTTTACCGTCGTGCGTGC
ACGACATTCGCACGTCTGCGCAGTTCGGTGGGTAACACTGCCTGTTGAGT
CACCAAGGGTGGTAGGTGTTGTGAGCGTCCTGCCCCCGATCGGAAGTCGT
GGAATGTGCTCGTACTAGCTCGGTTTTCACCCCATACAAGGACACAAACT
GGAGGAGGTAACGTGACACGGGCTCACATGTAGTTGCGATTTCAACACCA
GAGGAAGACAACCCTGATATTGCCCAGTTGTTTGCTTTCCTTCAGTGCCA
GCACCACCCGCCTCTGTTCCTTGCGAAGGACCACCATCCACGTCATACTC
CCAACTGCGATCGCCGGATGACCATGTTTGTGACCTCATGTTCTCCGCAA
GGTTTTTGGTCGAGAAGGCAGGGGCCGACAGTCGCGCCCGGGCGAAGGTC
ATGCACGAGCCGCTGCACGTGGCGTGTCTCGGAAACTGGGGACAGGTGGT
GAAGTTCTTGCTCAGCGAAGGGAACGTGGACGTTGAGGCAGCCGACAAAA
ATGGCATGAGGAGCCTGCACCTGGCCGTCCAGAGGAACAGGCTGGAGGCC
ATTCGGGAGTTGCTCAAGCACGGGTGCGGAGGTTTATCAGTCGCGGTTGC
GGTAACGCACGTTGGGCAGCTTGGCCGCCCGACGCCAATCGCAAGCGAAC
GAGTGATGAAAATGTCTTTTCAACGTCTCTTAATTTCTCGATTACCTCAC
TCTTGACGGTCTGGCTTCGTCGATCCAATGAAAACTTAATTTTTTTTCAC
GACGACGACATTTTTTTCGACTGCGTGCAGTCATGCCCTCGTCGGCGTGG
GCCGATCGCTCCTAATCCCGACAGCTTTGCCAGACGCACCGCTGTCAAGT
AGACCAAGACCGCGCAACACCGACCCACACGACGTGTGACAACAACGTGG
AGTGTGGCAACGTTTTTCGCAGGTGCGACGTCGAGGCCACTATGCCTGAC
GGGCTCACGCGACCCCTGCACATGGCTTGCGCCAGTGGGTACGAGAAGGC
CGCAACGCTCCTGCTGGACCACCATGCTGACATCGGCGCAATAGGCCCCA
AAGGACATCGTCCCCTACACCTGGCTGCCAAGGAGGAGCGCGCCGTCATT
GTTGAGGTGAGAAAAAACAACGACTTCATGACTGTCTGCTTCCCCACCTT
TTGTGTATGTTGTTATTTCGTGGGTTGACAACCCACCTGGGGAGTATAGC
CCCGGTGATACATTTCCCCAGAACAGTGAAACTGCTTACGGCGGACAGGG
TCTACTCCCGTAGACGGCGCGGGTAAGGCGTTCCGAAGTCGTAGTTGTCT
GAGCTCGCCACGCAGGGCAGAAAGGTTTTTCGTTGAACCGGCGAGGACAG
GTCAAGAACGCCTTTTCCACACTGCTGTTGGTTGGTGTGTCGGGTCAGGA
GTGAAAATGGGCTGCTGTCGGTCGGGAGAGGGGAAACAGGCTTGCTTCTT
GTTGGATGTAGGCACGATGAGGCAGAAATATGCCGTGTCTTCGGCTCGCT
CGCCCAGAAAACCAGGCACTTGCTTAAGCAAAGCTCCCACCACCTCCCTC
CTGAGGAACAGGCGCTGGTCATGACACTTGACGATGAGCCCACAACCCCC
CCCACCATACCTTGACGCCGCAGCTTTTGATAGGGCGAAAAGCGGATTTG
CACGCCAAGGATGACAGGGGGCGAGACGCTCTACACTACACCGACAGCCG
GAGGTGCAAGGAAAGGATTCGGGAGGCGCAGCGGAGGGAGGAGCGGGCTG
CCGAGGCTCAGAGGCAGCTGGCTCTCGAGAAGAAGAGGAACGAGGCAAAC
CGGCGAAGGGAGCAGGAGCTGCTGGACAGGGTTGACCTGCGGGCGAGAGC
AAGGCGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6320:2..2061+

>mRNA_Ecto-sp13_S_contig6320.17065.1 ID=mRNA_Ecto-sp13_S_contig6320.17065.1|Name=mRNA_Ecto-sp13_S_contig6320.17065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6320:2..2061+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAGCATCGCCACGGTGTCCAGGCTTTTGGAGCTCGGAGCCACCGTGAA
CGCGACTGAGAAACGCAAGCAGACGCCACTCCATTGTGCTTGCGAGCGGG
GCCGCTTGGACATAGTCAGGTTTTTGGTCGAGAAGGCAGGGGCCGACAGT
CGCGCCCGGGCGAAGGTCATGCACGAGCCGCTGCACGTGGCGTGTCTCGG
AAACTGGGGACAGGTGGTGAAGTTCTTGCTCAGCGAAGGGAACGTGGACG
TTGAGGCAGCCGACAAAAATGGCATGAGGAGCCTGCACCTGGCCGTCCAG
AGGAACAGGCTGGAGGCCATTCGGGAGTTGCTCAAGCACGGGTGCGACGT
CGAGGCCACTATGCCTGACGGGCTCACGCGACCCCTGCACATGGCTTGCG
CCAGTGGGTACGAGAAGGCCGCAACGCTCCTGCTGGACCACCATGCTGAC
ATCGGCGCAATAGGCCCCAAAGGACATCGTCCCCTACACCTGGCTGCCAA
GGAGGAGCGCGCCGTCATTGTTGAGCTTTTGATAGGGCGAAAAGCGGATT
TGCACGCCAAGGATGACAGGGGGCGAGACGCTCTACACTACACCGACAGC
CGGAGGTGCAAGGAAAGGATTCGGGAGGCGCAGCGGAGGGAGGAGCGGGC
TGCCGAGGCTCAGAGGCAGCTGGCTCTCGAGAAGAAGAGGAACGAGGCAA
ACCGGCGAAGGGAGCAGGAGCTGCTGGACAGGGTTGACCTGCGGGCGAGA
GCAAGGCGATAG
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