mRNA_Ecto-sp13_S_contig632.17063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: D7FIJ0_ECTSI (Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ0_ECTSI) HSP 1 Score: 368 bits (944), Expect = 4.250e-125 Identity = 178/185 (96.22%), Postives = 180/185 (97.30%), Query Frame = 3
Query: 84 MAGSAPQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPSAVETSK 638
MAGSA +EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRY VVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCV+ESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVS LHESTPSVWTEDAVNFYETFEPSAV T K
Sbjct: 1 MAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVWTEDAVNFYETFEPSAVVTPK 185
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A7S2V2Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q0_9STRA) HSP 1 Score: 148 bits (373), Expect = 2.630e-39 Identity = 73/174 (41.95%), Postives = 113/174 (64.94%), Query Frame = 3
Query: 102 QEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPSA 623
+E+++T ++V KK + + + + G++I+M GVIIRG+L ++ +GRY VG T+IRPA +I +E + F + +G +T IG+ C+IE+A IG NV+ VLG+ S VRD C L GTVL GAVVPPF+V+ GCP R+ S L E++P ++ A + Y+ F+ +A
Sbjct: 10 EEFIRTTTNNLVSKKVRISSPNFVKITGKTILMHGVIIRGDLAKVEMGRYCEVGANTIIRPALKISEEPT-----FADVKIGDNTRIGEDCIIEAAWIGTNVQXXXXXVLGKGSLVRDCCRLEDGTVLAPGAVVPPFSVVAGCPGRVTSELPENSPEEFSHAAQDSYKKFKETA 178
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A7S3QBQ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBQ9_9STRA) HSP 1 Score: 145 bits (365), Expect = 2.070e-37 Identity = 75/205 (36.59%), Postives = 116/205 (56.59%), Query Frame = 3
Query: 63 DLGRIMAMAGSAPQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRP-AYRI-------------EQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVS--ALHESTPSVWTEDAVNFYETFEPSAVE 629
D R++ + YVKT + V +KA +HG N+ + G+SI+ P V IRG+ Q +RIGRY +GEG+++RP +Y+ E EE +F PL VGSHT IGK CVIE+A +G +V I D CV+ + ++D C++ GTV+ + V+PPF+ + GCP M+ + ES + +D V + F + ++
Sbjct: 32 DPSRLVVEVAPEEEGYVKTAAYNYVSRKAFIHGAKNVEMKGKSIVHPKVHIRGDFQTVRIGRYCHIGEGSILRPPSYQASLDTSHEGASENGENEEEKQLIKFLPLIVGSHTQIGKGCVIEAAAVGSSVYIGDNCVISKRVIIKDCCYIASGTVIAQDTVIPPFSRVAGCPGGMIENGLMAESITTTSVDDCVEQFNEFVKTMIQ 236
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A0L0DIQ2_THETB (Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIQ2_THETB) HSP 1 Score: 140 bits (353), Expect = 2.530e-36 Identity = 67/174 (38.51%), Postives = 110/174 (63.22%), Query Frame = 3
Query: 99 PQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPS 620
P+E+++T G+ V + + + G N+ L G+S+++PG IIRG+L +RIGRY V+ + V+RPAY+ + N + LS+G Y+GK V+E+A IG +V I +G ++ + + + D C +LPG V+PE AV+PPF++ G PA ++ L E+ V E A YE++ P+
Sbjct: 8 PEEWIETASGNKVSRASVLCGSQNIILNGKSLVLPGSIIRGDLAAVRIGRYCVISDRVVLRPAYKALPKGLN----YFQLSLGDCVYVGKDAVVEAASIGSHVIIGEGAIVSKRAVILDCCEILPGAVVPEDAVIPPFSIYGGNPAVLIGELTEAAQRVHEEKAFACYESYVPA 177
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A3S1H5M8_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1H5M8_ELYCH) HSP 1 Score: 131 bits (329), Expect = 8.240e-33 Identity = 61/171 (35.67%), Postives = 102/171 (59.65%), Query Frame = 3
Query: 105 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEP 617
+Y++T G+ V +++ + G N+ + G++I+M G +IRG+L +RIGR+ ++ VIRPA++ + F PL +G H I ++ V+ +A +G V I CV+GR + ++D C + T+LP AVVPPFT+ G P ++ S L + T + T+ VN+Y F P
Sbjct: 12 QYIETASGNKVSRQSVLCGSQNIVINGKTIVMTGCVIRGDLANVRIGRHCIISNNAVIRPAFK----RFSKGVAFFPLHIGDHVLIEENSVVNAAQVGSFVHIGKNCVIGRRAVLKDCCAIADNTILPPEAVVPPFTLCSGSPGKLTSELPDCTQDLMTDITVNYYHHFRP 178
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A0K0JQM9_BRUMA (BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 RepID=A0A0K0JQM9_BRUMA) HSP 1 Score: 130 bits (326), Expect = 2.250e-32 Identity = 64/177 (36.16%), Postives = 101/177 (57.06%), Query Frame = 3
Query: 105 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPSAVETS 635
EYV+T G+ V +K+ + G N+ L G+S +M I+RG++ IR GRY VVGE T+IRP+Y+ + F P+ +G H +IG C++ +A IG V + ++ +LP TV+P AV+PPF+++ G P ++ L EST + T+ NFY+ F P + +S
Sbjct: 8 EYVETATGNKVNRKSRLFGSQNIVLNGKSTLMKDCILRGDMHNIRTGRYCVVGERTIIRPSYK----RFSKGLTFFPVHIGDHVFIGNDCIVMAAEIGAFVHXXXXXXXXXSVIIKSCVQVLPNTVVPHDAVIPPFSIVGGNPGTVIGHLPESTQELMTQATRNFYDNFVPDSKNSS 180
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A0N4UWP5_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UWP5_ENTVE) HSP 1 Score: 126 bits (317), Expect = 4.670e-31 Identity = 63/171 (36.84%), Postives = 105/171 (61.40%), Query Frame = 3
Query: 111 VKTRDGDIVFKKA-HVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPS 620
V+T G+ V ++ H+ G N+ L G+SIIM G I+RG+L +RIG+Y V+GE ++IRP+++ + + P+ +G + +I CV+ +A IG V I ++GR++ ++D +LP V+P+ AV+PPF+++ G PA +V L ST + + +FYE F PS
Sbjct: 14 VETATGNKVSRRGTHLFGSTNIVLSGKSIIMDGCILRGDLNSVRIGKYCVIGERSIIRPSFKAFSKGLT----YFPVHIGDYVFIENDCVVMAAQIGSFVHIGSNAIIGRSTVLKDCVQILPDAVIPQDAVIPPFSIVGGNPAVIVGELPPSTQDLMMQANKSFYENFVPS 180
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: L8GIW5_ACACA (Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIW5_ACACA) HSP 1 Score: 125 bits (315), Expect = 1.580e-30 Identity = 63/171 (36.84%), Postives = 101/171 (59.06%), Query Frame = 3
Query: 105 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEP 617
E+++T G+ V +K+ + G N+ L G++++MPG +IRG+L + +G+YSV+G VIRPA++ Q F P+++G +I + C++ + IG V + G VLGR+S ++D C + G+VL G VVPPFT+ G PA L E + E ++ Y TF P
Sbjct: 16 EFIETHTGNKVGRKSILCGSQNIRLHGKTVVMPGAMIRGDLGAVNVGKYSVIGRNVVIRPAHKRYQGS----VAFFPVTIGDFVHIEEDCIVSATSIGSYVHVGRGAVLGRHSVLKDCCWVEEGSVLAPGTVVPPFTIFGGSPAVQKGQLPECFQEMQKEASLINYNTFLP 182
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A6P3X098_DINQU (dynactin subunit 5 n=9 Tax=Aculeata TaxID=7434 RepID=A0A6P3X098_DINQU) HSP 1 Score: 124 bits (312), Expect = 2.270e-30 Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 3
Query: 105 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEPSAV 626
EYV+T G+ V + + G N+ L G+ I+ IIRG+L +R GRY ++ + VIRP ++ + + F PLS+G+H ++G+ V+ +A +GC V I ++GR S ++D C++ G V+P +VP FT G PA V L E T + T+ N+YE F P+ V
Sbjct: 12 EYVETASGNKVSRLTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAVIRPPFK----KFSRGVAFFPLSMGNHVFVGERAVVNAALVGCYVYIGRNAIIGRRSVLKDCCYIEDGAVVPPETIVPSFTRFAGSPATCVEELPECTVDLMTDFTKNYYEHFLPARV 181
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Match: A0A0D6ELH2_SPOSA (SPOSA6832_02372-mRNA-1:cds n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6ELH2_SPOSA) HSP 1 Score: 123 bits (309), Expect = 8.830e-30 Identity = 67/193 (34.72%), Postives = 103/193 (53.37%), Query Frame = 3
Query: 81 AMAGSAPQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQE--------------IRIGRYSVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVIESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSALHESTPSVWTEDAVNFYETFEP 617
A + S+ Y+ T G+IV + + + G N+ L G+SI+ PG IIRG+L+ + +G+Y VVGEGTV+RP Y+ + + + P+ +G + IG V+E+A IG V I GC++G + ++D + G V+ G +VP T G PAR + L ESTP + A FY F+P
Sbjct: 5 APSASSKSSYIHTDTGNIVSRASTITGSQNIVLGGKSILQPGCIIRGDLRRSGATSAGXXXXXVVVAMGKYCVVGEGTVLRPCYKTYKGVFS----YYPMKIGDYVSIGPGSVVEAASIGTGVEIGKGCIVGPLAILKDYSRIADGAVVGAGTIVPSLTEWSGSPARPTAQLPESTPELVEAKAKAFYSRFQP 193 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig632.17063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig632.17063.1 >prot_Ecto-sp13_S_contig632.17063.1 ID=prot_Ecto-sp13_S_contig632.17063.1|Name=mRNA_Ecto-sp13_S_contig632.17063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp MAMAGSAPQEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELback to top mRNA from alignment at Ecto-sp13_S_contig632:15267..18694+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig632.17063.1 ID=mRNA_Ecto-sp13_S_contig632.17063.1|Name=mRNA_Ecto-sp13_S_contig632.17063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig632:15267..18694+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig632:15267..18694+ >mRNA_Ecto-sp13_S_contig632.17063.1 ID=mRNA_Ecto-sp13_S_contig632.17063.1|Name=mRNA_Ecto-sp13_S_contig632.17063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig632:15267..18694+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |