mRNA_Ecto-sp13_S_contig6302.17045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: A0A6H5KIY2_9PHAE (SEC7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY2_9PHAE) HSP 1 Score: 268 bits (684), Expect = 5.140e-83 Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 2
Query: 5 WMSQDIAEHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLVGVTAAASS 427
WMSQDIAEHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTL GVTAAASS
Sbjct: 444 WMSQDIAEHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLFGVTAAASS 584
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI) HSP 1 Score: 262 bits (670), Expect = 2.620e-78 Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 2
Query: 2 GWMSQDIAEHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLVGVTAAASS 427
GW+SQDIAEHVRLMHEITWGPLVSVFSEVLEASESPELIELCL+GVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDD L VTAAASS
Sbjct: 904 GWISQDIAEHVRLMHEITWGPLVSVFSEVLEASESPELIELCLDGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDNLFRVTAAASS 1045
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: A0A7S2WKI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKI6_9STRA) HSP 1 Score: 123 bits (308), Expect = 4.540e-33 Identity = 58/123 (47.15%), Postives = 85/123 (69.11%), Query Frame = 2
Query: 26 EHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDD 394
EHV+ M E+TWGP++ V+S +L+ + +I LCLEG++ +VRIA + V R+ ++N L +FT LD R M+ KN+ C VL+S+AL++G+ L ++W VL CISQLARL +S LQ DD
Sbjct: 16 EHVKPMFEVTWGPILGVYSYLLDTQDDAVIIGLCLEGLQDSVRIAAMFGISVVRDAMINTLAKFTTLDTVREMRPKNIECISVLISIALSDGDYLGDAWATVLGCISQLARLHLLSSGLQTDD 138
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: A0A7S1U0S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0S2_9STRA) HSP 1 Score: 119 bits (299), Expect = 2.070e-28 Identity = 61/138 (44.20%), Postives = 87/138 (63.04%), Query Frame = 2
Query: 14 QDIA--EHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLVGVTAAA 421
QD+ HV M + WGP + FS++L + P L+ L L G + A+RIAGG ++ VAR TL+NAL +FT LD M++K++ C + L+ +A+ +GN + ESW LVLRC+SQ+ARLQ AS DD A+A
Sbjct: 707 QDVRPEHHVVPMFHVVWGPSLGCFSQLLSTTSEPGLVRLVLRGFRLAIRIAGGFELEVARHTLMNALAKFTTLDTVTQMQEKHIDCIRTLIDVAIHDGNHMHESWELVLRCLSQVARLQLFASGAHTDDAFFSADASA 844
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: A0A7R9U5G8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5G8_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.620e-27 Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 2
Query: 26 EHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLVGVTAAA 421
EHV M + WGP + FS +L + P L+ L L G + A+RIAG ++ VAR+TL NAL +FT LD M++K++ C K L+ +A+ +GN L SW LVLRC+SQ+ARLQ AS DD A+A
Sbjct: 625 EHVVPMFHVVWGPSLGCFSHLLSTTSEPILVYLVLRGFRLAIRIAGDFELEVARDTLTNALAKFTTLDTVTQMQEKHIDCIKALIDVAINDGNNLHASWELVLRCLSQVARLQLFASGAHTDDAFFSADASA 756
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: A0A8J9T0E8_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0E8_PHATR) HSP 1 Score: 115 bits (287), Expect = 8.570e-27 Identity = 56/124 (45.16%), Postives = 85/124 (68.55%), Query Frame = 2
Query: 32 VRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLV 403
V+ M ++TWGP++ + S+VLE S+ + +CL G AVRIA + +AR+T +++L +FT L + + MK KNV + LLS+A+ +G+ L ESWG VL+CISQLARL+ TAS L D++ +
Sbjct: 488 VKPMFDVTWGPMIGILSQVLECSDDERAVAVCLNGFVYAVRIAAHSKMSLARDTFVSSLAKFTFLGSLKEMKRKNVESIRTLLSIAVIDGDFLNESWGPVLQCISQLARLRLTASGLDSDESFL 611
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: B7G1F2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1F2_PHATC) HSP 1 Score: 115 bits (287), Expect = 9.100e-27 Identity = 56/124 (45.16%), Postives = 85/124 (68.55%), Query Frame = 2
Query: 32 VRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLV 403
V+ M ++TWGP++ + S+VLE S+ + +CL G AVRIA + +AR+T +++L +FT L + + MK KNV + LLS+A+ +G+ L ESWG VL+CISQLARL+ TAS L D++ +
Sbjct: 1045 VKPMFDVTWGPMIGILSQVLECSDDERAVAVCLNGFVYAVRIAAHSKMSLARDTFVSSLAKFTFLGSLKEMKRKNVESIRTLLSIAVIDGDFLNESWGPVLQCISQLARLRLTASGLDSDESFL 1168
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: A0A7S1BGY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGY9_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.270e-26 Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 2
Query: 20 IAEHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLVGV 409
IAE M ++ WGPL+ S+VLE SE P+ I LCL G ++RIAG ++ +ARET +N+LV+ T L +R M KN+ K LL++A+ +G L ESW V+ CISQ+ARLQ L DDT + V
Sbjct: 601 IAEIAGPMFDVMWGPLLGTLSQVLETSEDPKFITLCLGGFDLSIRIAGFNNMILARETYINSLVKLTALGLNREMTFKNIESIKALLNIAIWDGEYLNESWNTVIPCISQIARLQLFGGGLATDDTFLAV 730
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: A0A835ZB96_9STRA (SEC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB96_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.980e-25 Identity = 52/104 (50.00%), Postives = 78/104 (75.00%), Query Frame = 2
Query: 83 EVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDD 394
EVLE +E P+ + LCL G+++ VR+AG LD+ ARE +NA+ ++T++D++R ++ K+V C LL++AL++GNLL+ESW VL C S+LARLQ +AS L DD
Sbjct: 222 EVLEFAEEPKTVALCLRGLRQGVRLAGALDMSTAREAFVNAIAKYTVVDSARDLRPKSVACINALLAVALSDGNLLRESWSAVLNCASRLARLQLSASGLATDD 325
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Match: A0A1Z5JS85_FISSO (SEC7 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS85_FISSO) HSP 1 Score: 109 bits (273), Expect = 6.930e-25 Identity = 50/124 (40.32%), Postives = 85/124 (68.55%), Query Frame = 2
Query: 32 VRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIAGGLDVPVARETLLNALVRFTLLDASRHMKDKNVRCAKVLLSLALTEGNLLKESWGLVLRCISQLARLQNTASRLQQDDTLV 403
++ M ++TWGP++ + S+VLE S+ ++ +CL G + AV++A + + R+T +++L +FT L + + MK KNV + LL +A+++G L +SWG VL+CISQLARL+ +AS L D+T +
Sbjct: 932 IKPMFDVTWGPMIGILSQVLECSDDWRMVSVCLHGFQYAVKLASPNHMSLTRDTFVSSLAKFTFLGSIKEMKQKNVESIRTLLEIAISDGEHLGDSWGSVLQCISQLARLRLSASGLDSDETFL 1055 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6302.17045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6302.17045.1 >prot_Ecto-sp13_S_contig6302.17045.1 ID=prot_Ecto-sp13_S_contig6302.17045.1|Name=mRNA_Ecto-sp13_S_contig6302.17045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp MSQDIAEHVRLMHEITWGPLVSVFSEVLEASESPELIELCLEGVKKAVRIback to top mRNA from alignment at Ecto-sp13_S_contig6302:3697..6457+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6302.17045.1 ID=mRNA_Ecto-sp13_S_contig6302.17045.1|Name=mRNA_Ecto-sp13_S_contig6302.17045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2761bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6302:3697..6457+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6302:3697..6457+ >mRNA_Ecto-sp13_S_contig6302.17045.1 ID=mRNA_Ecto-sp13_S_contig6302.17045.1|Name=mRNA_Ecto-sp13_S_contig6302.17045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6302:3697..6457+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |