mRNA_Ecto-sp13_S_contig6299.17038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6299.17038.1
Unique NamemRNA_Ecto-sp13_S_contig6299.17038.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: D7FW66_ECTSI (Serine/threonine-prot n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW66_ECTSI)

HSP 1 Score: 1228 bits (3178), Expect = 0.000e+0
Identity = 614/665 (92.33%), Postives = 630/665 (94.74%), Query Frame = 1
Query:    1 MTTHDCFVNHGGHDPLEKSMSTFLHLDATSTTSSDLKEGLSEILERFQTDQRYRNDERYLKLWMRYADLSDDADKVFLLLKSAGIGTQLSLFWAAWAYVLEMAEAYERVALIIAEGRAWGAQPVSLLEEFLRSFHERMLERMRMVGLDARIGEVKEEIDFASTRSSEQAMLRAKQSQTAAHAQREHAPDKPNISQREPIEGINKLCTGGGGAHGSRCRPVDAPLGARDVNSRDGAALRRKECSTRNRPDRLPRPRVETDKTATIATATSTLVRNPFSADMRRRLTTNTTQYLCWASSSSIVYDSRLDSLAKVCPRRMAKVNVGSRRPVALARSLGNQRINVLGVLGEGAFAVVFSCKFSKNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVRRPRSEVDRTEEMEHAGGKDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVDHRSRDLKDCLRRQDNMIFNR 1995
            MT HDC  NHGGHDPL KSMSTFLHLD+TSTTSSDLKE LSEILERFQTDQRYRNDERYLKLWMRYADLSDDADKVFLLLKS GIGTQLSLFWAAWAYVLEMAEAYERVALIIAEGRAWGAQPVSL EEFLRSFHERMLERMRMVGLD+RI EVKEEID ASTRSSEQAMLRAKQSQTAAHAQREHAPD+PNIS+REPIEGI   CTGGGGA GSRCRPVDAPLGARDVNS DGAALRR+ECSTRNRPDRLPRPRVETDK ATIATA +TL+ NPFS DMRRRLTTNT QYLCWASSSSIVYD+RLDSLA+VCPRRMAKVNVGSRRPVALARSLGNQRINVLGVLGEGAFAVVFSCKF+K+QRDVAVKVEYKE+APSLPWECFITLQLSERLLH RQRK+ SVTEAPITVVKPEALFLYRDGCAM MPVGLAGTLHDLVA YSKRA+AVPQLVAMHYAVEMLRFCR MHSASILHMDIKPDNWLLVRRPRSEVDRTEEMEHAGG DHS+SLIDFGRAIDLSVFPQNGSDMAF GQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDS LNRSGRWRPV+NCKRYWEVDLWD IFSELLNSDYR  DT G NE LLRLEESLTSYLNVDHRSRDLKDCLRRQDNM  NR
Sbjct:    1 MTMHDCDANHGGHDPLAKSMSTFLHLDSTSTTSSDLKEALSEILERFQTDQRYRNDERYLKLWMRYADLSDDADKVFLLLKSEGIGTQLSLFWAAWAYVLEMAEAYERVALIIAEGRAWGAQPVSLFEEFLRSFHERMLERMRMVGLDSRISEVKEEIDLASTRSSEQAMLRAKQSQTAAHAQREHAPDQPNISEREPIEGIENFCTGGGGACGSRCRPVDAPLGARDVNSHDGAALRRQECSTRNRPDRLPRPRVETDKKATIATAIATLICNPFSPDMRRRLTTNTAQYLCWASSSSIVYDTRLDSLARVCPRRMAKVNVGSRRPVALARSLGNQRINVLGVLGEGAFAVVFSCKFNKDQRDVAVKVEYKEDAPSLPWECFITLQLSERLLHRRQRKVHSVTEAPITVVKPEALFLYRDGCAMAMPVGLAGTLHDLVAQYSKRAQAVPQLVAMHYAVEMLRFCRAMHSASILHMDIKPDNWLLVRRPRSEVDRTEEMEHAGGIDHSVSLIDFGRAIDLSVFPQNGSDMAFMGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSTLNRSGRWRPVKNCKRYWEVDLWDKIFSELLNSDYRAADTAGNNEALLRLEESLTSYLNVDHRSRDLKDCLRRQDNMFSNR 665          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: UPI000D1C2A79 (mitotic checkpoint serine/threonine-protein kinase BUB1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C2A79)

HSP 1 Score: 179 bits (455), Expect = 2.030e-43
Identity = 187/705 (26.52%), Postives = 301/705 (42.70%), Query Frame = 1
Query:   13 DCFVNHGGHDPLEKSMSTFLHLDATSTTSS--DLKEGLSEILE----RFQTDQRYRNDERYLKLWMRYADLSDDADKVFLLLKSAGIGTQLSLFWAAWAYVLEMAEAYERVALIIAEGRAWGAQPVSLLEEFLRSFHERMLERMR----------MVGLDARIGEVKEEIDFASTRSSEQAMLRAKQSQTAAHAQREHAPDKPNISQREPIEGINKLCTGGGGAHGSRCRPVDAPLGARDVNSRDGAALRRKEC---------------STRNRPDRLPRPRVETDKTATIATATSTLVRNPFSADMRRRLTTNTTQYLCWASSSSIVYD--SRLDSLAKVCP-------RRMAKVNVGSRRPVALARS--LGNQRINVLGVLGEGAFAVVFSC-KFSKNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVRRPRSEVDRTEEMEHAGGKDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGR-WRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVDHRSRDLKDCLRRQDNMIFNR 1995
            D   ++ G DPL+  ++         T+SS   ++  L  +LE     F  D RYR D RYL++W+RYAD   D   +F LL++  IG   SLF+ A+A +LE+     +   I   G +  AQPV  LE+   SF +R  +  R           V   + I     +   A  + +E+A++     + AA+A+      +P I+ RE +  +  L               + PL    V      + +R+E                    +P    +P +   K        +  V + F  D R R       +       ++V D   +L    + C        +    V++ S +  A  ++  LGN    + G  G+GAFA V+   + S N+  V +K++     P  PWE +I  QL +R+    +    S  +          ++++ D   +    G  GTL D+V  Y   +  + +L+ M+Y +EMLR   V+H   I+H D KPDN LL+R      +          K   + LID+GR+ID+ +FP+ G++  F       +F C  M E   W +  D Y L   ++ MLHG Y+E+  ER  D      GR  +P  + KRYW  ++WD  F  LLN+          +     LE+++ S  N  H  R LK+ L +Q  M++ R
Sbjct:   67 DAIQSYAGSDPLKPWVACVKWAKGIITSSSAPGVRAELCPLLEFCTKAFLDDPRYREDLRYLRIWLRYADCCADPLHIFELLEAKRIGQTHSLFYEAYAMILELRGDITKANQIYELGISRHAQPVEQLEKMHASFLKRKFKTSRPSEVKGSFVAAVNPMSNIARPHGDETIAIKKYAEEAIVLGVDPE-AANAETHIGLVEPTINTREALVNVLSL--------------FNQPLPLDQVKQPKAPSCQRRELPGAMELNVFVDEAPLEQAKKPQGQDKPSLGAGKMDF-----NIFVDDAFCDDRRDRKIEFVDPW-----DETLVADLLKKLAPPLQTCKGFHCSSKKYSGGVSLSSLKANARNKTVELGNSTYFLKGCTGQGAFAQVYQAHENSNNESPVVLKIQ----KPPCPWEFYIYYQLDKRIPVEERDSFGSARK----------MYVFSDCSILVAGYGQHGTLQDVVNAYLAHSLKMDELLCMYYTIEMLRMLEVLHGVGIIHADFKPDN-LLIRNESDNWENWAPNRPGCWKGQGLCLIDWGRSIDMRLFPE-GTE--FLADSKTSAFRCIEMMEERPWTYQVDGYGLCCIVHCMLHGSYMELEEERSPDG-----GRVHKPKASLKRYWNTNVWDKFFKTLLNAS----PPLPLSSLREMLEQTIVS--NAAHPRR-LKELLIKQTVMMYPR 716          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: UPI001C4F50DA (mitotic checkpoint serine/threonine-protein kinase BUB1 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F50DA)

HSP 1 Score: 169 bits (427), Expect = 1.490e-42
Identity = 98/284 (34.51%), Postives = 146/284 (51.41%), Query Frame = 1
Query: 1000 LGNQRINVLGVLGEGAFAVVFSCKFSKNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVRRPRSEVDRTEEMEHAGG-KDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLN 1848
            LG ++  ++G  G+G FA VF    + N  DV   V  K + P+ PWE ++  QL  R+         S  E P +    E + ++ D   +       GTL D +  Y      + +++ ++Y +EMLR    +HS SI+H D KPDN LL+R  R E+   E     G   D  + L+D+GR IDLS+FP +G++  F G C    F C  M+E   WK   D Y L   ++ MLHG Y+E+ +   D S +     ++P  + KRYW V+LW  +F+ELLN
Sbjct:   37 LGGKKYQIIGCAGQGGFAQVFKAYINSNPDDV---VALKIQKPAFPWEFYMYRQLDSRI---------SDKERP-SFGFAERVHVFSDSSILVCDYLAHGTLQDAINSYIVTGHNMDEVLCIYYTIEMLRMLETLHSISIIHGDFKPDN-LLIRYARDELIDEEFRSQTGAWHDQGLCLVDWGRGIDLSLFP-DGTE--FEGDCRTSGFRCVEMQENKPWKFQVDTYGLCVIVHMMLHGSYMEIQKVSSDGSYI-----YQPKSSLKRYWNVELWKKLFTELLN 298          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: V9FHN2_PHYPR (BUB protein kinase n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=V9FHN2_PHYPR)

HSP 1 Score: 178 bits (452), Expect = 1.540e-42
Identity = 114/336 (33.93%), Postives = 177/336 (52.68%), Query Frame = 1
Query: 1015 INVLGVLGEGAFAVVFSCKFS----KNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVR-RPRSEVD------RTEEMEHAGGKDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVDH-RSRDLKDCLRRQDNMI 1986
            + ++GVLG G+FA VFS K       + R+ AVK+E  +E  +L WE +IT ++ ++L   R      + +  I V     L L+ +G  + M  G  GTL D++  Y +     P+++A++Y ++MLR   ++HSA++LH DIKPDNWL++   P SE++      + +++  AG     + LID+GR+IDLS +P       F G C A  F C  M     W +  D +A    M+ ML G Y+EV  +R      +    W  V+  KRYW+VD+W+  F  LLN  +  TD      +LL L   +  Y   D  R ++L   L RQD+++
Sbjct:  553 VQLVGVLGSGSFAYVFSAKVVDTTINSTRNKAVKIE--KERQNLAWEFYITNKIKKKLRIER-----GIPDEKIPVPTLTELHLFSNGALLIMDKGHVGTLFDVLNCYKQWGTTFPEVLAVYYGIKMLRCIELLHSANVLHGDIKPDNWLMIPGNPSSELELISQEPKPDKVYQAG----DLYLIDYGRSIDLSFYPDG---TVFRGSCHAKGFQCVEMLTQRPWTYQIDTFAFCGTMHCMLFGEYMEVKPKRNAKGATH----WGIVRQFKRYWQVDMWENFFHVLLNV-HSCTD----QPSLLNLRRRMERYFVSDRSRQQELFKQLSRQDSVL 865          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: W2RDA4_PHYPN (BUB protein kinase n=13 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RDA4_PHYPN)

HSP 1 Score: 178 bits (452), Expect = 3.290e-42
Identity = 114/336 (33.93%), Postives = 177/336 (52.68%), Query Frame = 1
Query: 1015 INVLGVLGEGAFAVVFSCKFS----KNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVR-RPRSEVD------RTEEMEHAGGKDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVDH-RSRDLKDCLRRQDNMI 1986
            + ++GVLG G+FA VFS K       + R+ AVK+E  +E  +L WE +IT ++ ++L   R      + +  I V     L L+ +G  + M  G  GTL D++  Y +     P+++A++Y ++MLR   ++HSA++LH DIKPDNWL++   P SE++      + +++  AG     + LID+GR+IDLS +P       F G C A  F C  M     W +  D +A    M+ ML G Y+EV  +R      +    W  V+  KRYW+VD+W+  F  LLN  +  TD      +LL L   +  Y   D  R ++L   L RQD+++
Sbjct:  816 VQLVGVLGSGSFAYVFSAKVVDTTINSTRNKAVKIE--KERQNLAWEFYITNKIKKKLRIER-----GIPDEKIPVPTLTELHLFSNGALLIMDKGHVGTLFDVLNCYKQWGTTFPEVLAVYYGIKMLRCIELLHSANVLHGDIKPDNWLMIPGNPSSELELISQEPKLDKVYQAG----DLYLIDYGRSIDLSFYPDG---TVFRGSCHAKGFQCVEMLTQRPWTYQIDTFAFCGTMHCMLFGEYMEVKPKRNAKGATH----WGIVRQFKRYWQVDMWENFFHVLLNV-HSCTD----QPSLLNLRRRMERYFVSDRSRQQELFKQLSRQDSVL 1128          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: UPI000B8CECAD (mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 n=2 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CECAD)

HSP 1 Score: 171 bits (432), Expect = 1.570e-41
Identity = 109/350 (31.14%), Postives = 172/350 (49.14%), Query Frame = 1
Query:  931 KVCPRRMAKVNVGSRRPVALARSLGNQRINVLGVLGEGAFAVVFSCKFSKNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVRRPRSEVDRTEEMEHAGG-KDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVDHRS-RDLKDCLRRQ 1974
            KVC   ++ +   SR  +     +G ++  + G  G+G FA VF    + N  DV   V  K + P  PWE ++  QL +R+   +QR I               + LY D   +       GTL D++  Y    +++ +++ ++Y +EML     +HS  I+H D KPDN LLV+  R ++   +  + +G  +D  + L+DFGR IDL +FP N   + F G C   SF C  M+E   WK   D Y L   ++ MLH  Y+EV ++            ++P  + +RYW VDLW+ +F++LLNS +   DT    + L  L ES   Y++ +    + LK  L +Q
Sbjct:  205 KVC---LSSLQKSSRNKII---EIGGKKYQIKGCAGQGGFAQVFKAHENSNPDDV---VALKIQKPPFPWEFYLYRQLDQRI-SDKQRSIFGFAHR---------MHLYTDYSILVCGYLSHGTLQDVINSYVVIGKSMEEVLCIYYTIEMLYMLETLHSVGIIHGDFKPDN-LLVQYSREDLTEDDFYDRSGPWRDQGLCLVDFGRGIDLRLFPDN---VEFKGDCRTSSFRCVEMQENRLWKFQVDAYCLCGVVHMMLHNSYMEVVKKASSSG----DYIYKPRSSLRRYWNVDLWENLFTKLLNSSHGNDDT----KLLRSLRESFQWYIHDNPELLKKLKQLLAKQ 523          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: A0A329SEE5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SEE5_9STRA)

HSP 1 Score: 174 bits (440), Expect = 9.600e-41
Identity = 113/346 (32.66%), Postives = 175/346 (50.58%), Query Frame = 1
Query:  973 RRPVALARSLGNQRINVLGVLGEGAFAVVFSCKF----SKNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVR-RPRSEVDRTEEMEHAGGKDHS--MSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVD-HRSRDLKDCLRRQDNMI 1986
            R+P+    S     + ++GVLG G+FA VFS K     S    + AVK+E  +E  +L WE +IT ++ +++    +     + +  I V     L L+ +G  + M  G  GTL D++  Y +     P+++A++Y ++MLR   ++HSA +LH DIKPDNWL++   P SE+    +  H     H+  + LID+GR+IDLS++P+      F G C A  F C  M     W H  D +A    ++ ML G Y+EV   R      +    W  V+  KRYW+VD+W   F  LLN    T        +L  L     +Y   D +R ++L   L RQD+++
Sbjct:  802 RKPIVFKAS-PTLTLQLVGVLGSGSFAYVFSAKVVDTTSNTTCNKAVKIE--KERQNLAWEFYITNKIKKKVRIENK-----LPDEKIPVPTFTGLHLFPNGALLIMEKGDFGTLFDVLNCYKQWGITFPEVLAVYYGIKMLRCIEMLHSAKVLHGDIKPDNWLMIPGNPSSELSMITQEPHTDKDFHAGDLHLIDYGRSIDLSLYPEG---TVFKGNCHAKGFQCVEMLTHRPWTHQVDTFAFCGTVHCMLFGEYMEVKPRRNAKGATH----WGIVKQFKRYWQVDMWTDFFHNLLNVRSCTDQ-----PSLPNLRRRFENYFVSDGNRQQELFKQLSRQDSLL 1127          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: A0A0P1B6J4_PLAHL (Bub protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6J4_PLAHL)

HSP 1 Score: 167 bits (423), Expect = 3.240e-40
Identity = 128/413 (30.99%), Postives = 198/413 (47.94%), Query Frame = 1
Query:  793 ATATSTLVRNPFSADMRRRLTTN--TTQYLCWASSSSIVYDSRLDSL--AKVCPRRMAKVNVGSRRPVALARSLGNQRINVLGVLGEGAFAVVFSCKFSKNQRDV----AVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVR-RPRSEV-----DRTEEMEHAGGKDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVD-HRSRDLKDCLRRQDNMI 1986
            AT    L  +PF+ + R+ L ++    +YLC    +  ++ +RL  L  A     ++ K  V    P    R        +L VLG G+FA VFS       ++     AVK+E  +E  +L WE +IT Q+  RL   R     S  E P+       L L+ +G  + M  G  GTL D++  Y +     P+++ ++Y+++MLR   ++H A +LH DIKPDNWL++   P SE+     D   + E   G    + LID+GR+IDL ++P+      F G C A  F C  M     W H  D +A    M+ +L G Y+++   +     ++    W   +  KRYW+VD+W+ IF ELLN       +     +L  +   L SY   D +R R+L   L RQ+ +I
Sbjct:  163 ATVVPALELDPFTFENRKTLVSDKRVERYLCSRPDAVKLHSNRLPRLLCANQSKCKLQKQFVFKAGPTLSLR--------LLKVLGSGSFANVFSANVVDTSKNTTLSKAVKIE--KERQNLAWEFYITNQIKNRL---RIENELSDKEIPVPTFTE--LHLFSNGALLIMEKGHIGTLFDILNCYKQSGIRFPEVLVVYYSIKMLRCIELLHCAKVLHGDIKPDNWLMMPGNPASELSMIIQDPRIDNEFQAG---DLFLIDYGRSIDLGLYPEG---TYFNGSCHAKGFQCVEMLTQRPWLHQIDTFAFCGTMHCLLFGEYMDIKPRQNSKGTID----WGIARQFKRYWDVDMWEGIFYELLN-----VRSCIDQPSLSDIRGRLKSYFVSDENRQRELFKQLSRQERII 545          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: A0A067D3C5_CITSI (Protein kinase domain-containing protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067D3C5_CITSI)

HSP 1 Score: 160 bits (405), Expect = 1.540e-39
Identity = 99/326 (30.37%), Postives = 159/326 (48.77%), Query Frame = 1
Query: 1000 LGNQRINVLGVLGEGAFAVVFSCKFSKNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVRRPRSEVDRTEEMEHAGGKDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVDHRS-RDLKDCLRRQ 1974
            +G ++  + G  G+G FA VF    + +  DV   V  K + P+ PWE ++  QL +R+   R+R                 + LY D   +       GTL D +  Y    +++ +++ ++Y +EML     +H   I+H D KPDN LL+R  R E+   +       +D  + L+D+GR IDL +FP N   M F G C    F C  M+E   WK   D Y L + ++ MLH  Y+E+ ++   D  L     + P  + KRYW+V+LW ++F+ LLN       +    E L  L++S   YL  + +  ++LK+ L +Q
Sbjct:   45 IGGKKYQIKGCAGQGGFAKVFKAYVNGDPEDV---VALKIQKPAFPWEFYMYRQLDQRI-SGRERSSFGFAHR---------IHLYSDYSILVCDYLSQGTLQDAINSYVVIGKSMEEVLCIYYTIEMLCILESLHDVGIIHGDFKPDN-LLIRYARDELTVLDHDRSGPWQDQGLCLVDWGRGIDLHLFPDN---MEFEGDCRTSGFRCIEMQEKKPWKFQVDTYGLCAIVHMMLHNSYMEIEKKASPDGGLV----YLPKLSFKRYWKVELWKSLFTNLLNMS-----SGNDKEVLQNLQKSFQDYLCSNPQLLKNLKELLAKQ 344          
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Match: A0A067CDW5_SAPPC (BUB protein kinase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDW5_SAPPC)

HSP 1 Score: 160 bits (405), Expect = 1.910e-39
Identity = 102/326 (31.29%), Postives = 156/326 (47.85%), Query Frame = 1
Query: 1018 NVLGVLGEGAFAVVFSCKFSKNQRDVAV--KVEYKEEAPSLPWECFITLQLSERLLHSRQRKICSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVPQLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVRRPRSEVDRTEEMEHAGGKDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGLAWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKRYWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVD-HRSRDLKDCLRRQDNMI 1986
            ++ G LG G+FA V++  F   +    +  +V  K+    LPWE +    +  R   S       +      V++ + L +Y++   + +     GTLHDLV  Y+K  +AVP+ +A+ Y ++MLR   ++HSA  LH DIKPDNW+L+R              A  +   +SLIDFGR+IDL ++P+      F G C A  F C  M     W+H  D + + +  +F+L G Y+E+               WR  ++ KRYW  DLW T+F  +LN       +      LL L   L  Y   D  + ++L   LR QD M+
Sbjct:   55 HLTGRLGSGSFASVYAATFPSIEDTELMDHEVAMKKGIEFLPWEFYAIQTIHNRTKPSHWALFPRLHPF---VIQVDQLHVYQNATFLCLERSYRGTLHDLVNTYAKHGKAVPENIAVFYTLQMLRSIHMVHSAHFLHGDIKPDNWVLLRGSGLATGA------AAFETSELSLIDFGRSIDLRLYPKG---TCFKGDCHAKGFQCVEMLTKRPWRHQVDAFGVVATAHFLLFGDYIELHT--------TSPSTWRIKRHWKRYWRSDLWTTLFDRVLN-----VPSCDAPPDLLALATMLERYYTEDASKIKELTQLLRAQDRMV 355          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6299.17038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW66_ECTSI0.000e+092.33Serine/threonine-prot n=2 Tax=Ectocarpus TaxID=287... [more]
UPI000D1C2A792.030e-4326.52mitotic checkpoint serine/threonine-protein kinase... [more]
UPI001C4F50DA1.490e-4234.51mitotic checkpoint serine/threonine-protein kinase... [more]
V9FHN2_PHYPR1.540e-4233.93BUB protein kinase n=5 Tax=Phytophthora parasitica... [more]
W2RDA4_PHYPN3.290e-4233.93BUB protein kinase n=13 Tax=Phytophthora parasitic... [more]
UPI000B8CECAD1.570e-4131.14mitotic checkpoint serine/threonine-protein kinase... [more]
A0A329SEE5_9STRA9.600e-4132.66Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0P1B6J4_PLAHL3.240e-4030.99Bub protein kinase n=1 Tax=Plasmopara halstedii Ta... [more]
A0A067D3C5_CITSI1.540e-3930.37Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A067CDW5_SAPPC1.910e-3931.29BUB protein kinase n=1 Tax=Saprolegnia parasitica ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6299contigEcto-sp13_S_contig6299:371..5758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1237.6
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FW66
Model size2753
KEGG koko:K02178
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,map04110,map04111,map04113,map04114,map04914
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.meiotic sister chromatid cohesion, centromeric
EggNOG OGsKOG1166@1,KOG1166@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-01_003570.1
EC2.7.11.1
Cds size1998
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6299.17038.1prot_Ecto-sp13_S_contig6299.17038.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6299 1126..5758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463873.9991744-UTR-Ecto-sp13_S_contig6299:370..11251681463873.9991744-UTR-Ecto-sp13_S_contig6299:370..1125Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6299 371..1125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463874.0150573-CDS-Ecto-sp13_S_contig6299:1125..13241681463874.0150573-CDS-Ecto-sp13_S_contig6299:1125..1324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 1126..1324 -
1681463874.0295548-CDS-Ecto-sp13_S_contig6299:2119..22741681463874.0295548-CDS-Ecto-sp13_S_contig6299:2119..2274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 2120..2274 -
1681463874.0466878-CDS-Ecto-sp13_S_contig6299:2404..26681681463874.0466878-CDS-Ecto-sp13_S_contig6299:2404..2668Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 2405..2668 -
1681463874.0617728-CDS-Ecto-sp13_S_contig6299:2912..30651681463874.0617728-CDS-Ecto-sp13_S_contig6299:2912..3065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 2913..3065 -
1681463874.074662-CDS-Ecto-sp13_S_contig6299:3174..32851681463874.074662-CDS-Ecto-sp13_S_contig6299:3174..3285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 3175..3285 -
1681463874.0914686-CDS-Ecto-sp13_S_contig6299:3422..36241681463874.0914686-CDS-Ecto-sp13_S_contig6299:3422..3624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 3423..3624 -
1681463874.1085548-CDS-Ecto-sp13_S_contig6299:3914..44721681463874.1085548-CDS-Ecto-sp13_S_contig6299:3914..4472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 3915..4472 -
1681463874.1190014-CDS-Ecto-sp13_S_contig6299:4657..48151681463874.1190014-CDS-Ecto-sp13_S_contig6299:4657..4815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 4658..4815 -
1681463874.1288965-CDS-Ecto-sp13_S_contig6299:5247..53831681463874.1288965-CDS-Ecto-sp13_S_contig6299:5247..5383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 5248..5383 -
1681463874.1423936-CDS-Ecto-sp13_S_contig6299:5696..57581681463874.1423936-CDS-Ecto-sp13_S_contig6299:5696..5758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6299 5697..5758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6299.17038.1

>prot_Ecto-sp13_S_contig6299.17038.1 ID=prot_Ecto-sp13_S_contig6299.17038.1|Name=mRNA_Ecto-sp13_S_contig6299.17038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=666bp
MTTHDCFVNHGGHDPLEKSMSTFLHLDATSTTSSDLKEGLSEILERFQTD
QRYRNDERYLKLWMRYADLSDDADKVFLLLKSAGIGTQLSLFWAAWAYVL
EMAEAYERVALIIAEGRAWGAQPVSLLEEFLRSFHERMLERMRMVGLDAR
IGEVKEEIDFASTRSSEQAMLRAKQSQTAAHAQREHAPDKPNISQREPIE
GINKLCTGGGGAHGSRCRPVDAPLGARDVNSRDGAALRRKECSTRNRPDR
LPRPRVETDKTATIATATSTLVRNPFSADMRRRLTTNTTQYLCWASSSSI
VYDSRLDSLAKVCPRRMAKVNVGSRRPVALARSLGNQRINVLGVLGEGAF
AVVFSCKFSKNQRDVAVKVEYKEEAPSLPWECFITLQLSERLLHSRQRKI
CSVTEAPITVVKPEALFLYRDGCAMTMPVGLAGTLHDLVALYSKRARAVP
QLVAMHYAVEMLRFCRVMHSASILHMDIKPDNWLLVRRPRSEVDRTEEME
HAGGKDHSMSLIDFGRAIDLSVFPQNGSDMAFTGQCCAPSFSCPAMREGL
AWKHDADLYALGSCMYFMLHGVYLEVSREREDDSMLNRSGRWRPVQNCKR
YWEVDLWDTIFSELLNSDYRTTDTTGTNETLLRLEESLTSYLNVDHRSRD
LKDCLRRQDNMIFNR*
back to top

mRNA from alignment at Ecto-sp13_S_contig6299:371..5758-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6299.17038.1 ID=mRNA_Ecto-sp13_S_contig6299.17038.1|Name=mRNA_Ecto-sp13_S_contig6299.17038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5388bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6299:371..5758- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCACGCATGATTGTTTTGTCAACCACGGAGGCCACGACCCCCTGGA AAAATCGATGAGGTATGTGCACGTTGGGACTTTTCGTTCATCTCAATATT TCAATATTTCCCTACTGCACAATACACAGCAGGTCCTAGGAGTTCATCAA ACTACAGTACTTTCAAGGCACAACCAACCGTATCTTGCTGATGACCCGCA GCTTCATTGCTTCTTTTTTCAATCTCTTTGTATGTAGGGATGTACAACGC TCTATATTTCCATATACATGTGCAACATGATAGCCAATCAGCTCCATGCA AGCTGTGTCCTGAACAGCAGTAGTCTATGTATCAGATCAAAATCTTACGA TCCACGCTGCTTGCGCCCCCTTCAGCACTTTCCTGCATTTAGACGCCACA AGCACCACAAGCAGCGACCTAAAGGAGGGCTTGTCGGAGATCCTGGAACG CTTTCAGACCGACCAGCGCTACCGCAACGACGAGCGATACCTCAAGCTCT GGATGCGCTACGTAAGTTTTGATGCGCGGCTCTGTGTAGCATGTTGATGC GAATTTCAAAGCTTCACTACTCCACGACTAAGAGGATGCTGATACCACAG AAGACGTTGTCAGAAAGCTCTCGACGAGGCGGTTCCAACGCCGCCATTTT CGGCGCCGTCACTGGTTTTCCTGCCGAGCAATCGAGCTTTGAAAATCGGG CCAGGGGGTGAAGTATCTTTTGCAACATACGGTATTCGTTCGTATTCGTG TTTGGTTCATGTGTGTGGACGTGCGGACGATCAATTGCTGCGTGGACCGT TATGGGTAGAACATGTATACCACGACTAAATAGACATGATACGCATATGC GTTTGATACATTTCCTTCTTCTCCGCCCTTTAACACCTGCCGGGTGCGCT TAACTCGACATGTGCCATACCACACATTGCGATACATACGCAGGCCGACC TATCCGACGATGCCGATAAAGTGTTTCTGCTGCTGAAGTCGGCGGGCATC GGCACGCAATTATCCTTATTTTGGGCAGCTTGGGCGTACGTTCTCGAGAT GGCCGAAGCATACGAGAGGGTGGCCCTGATAATAGCAGAGGGACGTGCTT GGTGAGTCGTACACTGAATTAAATAAGCTGGTCATTTCCGAAACCTTCAC CAAGTGGGGCCAAGGGAAGTGCATGTATGCTCATCCATATCCAGCGTACA CCTGTTCCAGGTTTGCCAACGTGATGGAGACATATTGCGCAACACCAACA CCACTGCTGTCCTCGCATCTTTCGTGAATCGTGCAGGGGTGCCCAACCTG TGTCTCTCCTTGAAGAATTTCTACGCTCCTTTCACGAAAGGATGCTTGAG AGGATGCGAATGGTGGGTCTAGATGCGCGGATAGGTGAAGTCAAGGAGGA GATCGACTTCGCCTCTACTCGCAGCAGTGAACAAGCCATGCTGCGCGCGA AGCAGTCCCAAACCGCGGCTCATGCGCAACGCGAGCACGCACCAGACAAG CCCAACATCAGCCAGCGCGAGCCAATCGAAGGGATCAATAAATTGTGCAC TGGTGGTGGAGGTGCTCATGGCTCAAGATGCAGGCCTGTAGATGCCCCCC TCGGAGCTAGAGATGTCAATTCCCGCGATGGAGCCGCGCTGAGACGTAAG GAATGCTCTACGAGGAACAGGCCAGACAGACTGCCACGGCCTCGCGTGGA AACCGACAAGACGGCCACCATCGCAACTGCAACCTCCACACTAGTTCGTA ATCCGTTCTCTGCGGACATGCGAAGACGCCTCACAACCAACACCACGCAG TACCTTTGCTGGGCCAGCTCTTCCAGCATAGTGTATGATTCTAGGCAAGA CTCTTAAGCTTGAGGTTTCTCTGATTGCGCATGTATGCCTTGGCCAGTAG TGCTCCGTGTAGAACGCCAGGATAAGGTTAAGTACGCGTTGTCCAGCTAC TGCCAGAAACCCCCTTTCGACGCAATAGACCTATGCAGCAGCAGCGATGA CAGTGCCAGCAGTGAGCGAACTGGCTGGTGGCTGTTGAACATTTTAGTGT ACATGTCAGCGTAGAAAAGTGCATGACGGTCGCATTTACGGTTGAATCGA ACTCATATCGATGCTGTTGTATGGGCCGCGACAGGCTCGACAGCTTGGCA AAAGTATGTCCTCGCCGGATGGCCAAGGTGAATGTTGGCTCACGTCGACC GGTCGCGTTGGCGAGGTCGCTCGGAAACCAAAGGATCAATGTGCTGGGAG TACTTGGAGAGGGGGCTTTCGCCGTGGTGTTTTCTTGCAAGTTCAGCAAG AACCAACGCGACGTGGCAGTAAAAGTGGAGTATAAGGTGAGTACGAGCCC TCGTGTGTCCTCCTTGTCGCGTTCTTTGGCTTCAAGAGGTCCCACACGAA GCATAATGTATGCGCGTGCCCGCCCTTTTCCTGACAATATACTGCTGCTT TTGGTTCTCTCTGAATCCCCAAGGAAGAAGCACCATCACTTCCGTGGGAG TGCTTCATCACACTTCAACTGAGCGAGCGACTGTTGCATAGTCGCCAGAG GAAGATCTGCAGCGTTACCGAGGCGCCAATTACGGTGAGGCTCTATGAAA ACGGGTGCAGGTCTATCAACAGTTGGCATTACTAGATGCTTGTGAACTCG AGCTGATCATTCTTGTTCACTTGCTTTTGACTTAACATTCCAGGTGGTTA AACCCGAGGCTCTTTTCTTGTACCGCGATGGATGCGCGATGACGATGCCT GTGGGTCTGGCTGGCACGCTACACGATCTTGTCGCACTATACTCGAAAAG AGCACGGGCCGTACCGCAGCTCGTTGCAATGCACTATGCAGTAGAGGTAA GAACCTCGACTTGGTCGGTCGACCTTGGTGACAGCAGCTCGCGCACCATT CTCCATTTATGGCCCGTGCTGTTGGATGGGCCAATTTCGGATCAAGTTAT GAATTGCCACTGTCCTCGGTCGCCCACGCCTGTACTTGCGAACGGCGTCA ATTGTCTTGACTTTGCAACGCATGACCCAATACCACTGGTACCTTGTGTA CATGAATGGTCAACCTTTCTTTTTTGGTGCGGTGGCGCAGATGCTGCGCT TTTGTCGAGTAATGCACTCGGCATCAATCCTGCACATGGACATCAAACCG GACAACTGGCTGCTGGTACGTCGCCCCCGCAGTGAAGTGGACCGCACGGA GGAGATGGAACATGCTGGGGGCAAAGACCATTCCATGTCTTTGATCGATT TTGGAAGAGCGATCGATCTCTCTGTTTTTCCCCAGAATGGATCGGATATG GCATTCACGGGGCAGTGCTGCGCTCCGAGCTTTTCATGCCCGGCGATGAG GGAGGTATGTGCTCTCCTTCGCGTCGCGCTCTTCAGAACCCTTTCACCTC AGTCGTCTGCCCTTTTCCATCCATCGCTCGATCTCTGGAGTGGTGTACGC TGAAGCACGACAACATTGTTCTTGGCGAACGTAGGGCCTGGCTTGGAAGC ATGATGCCGATCTGTACGCTCTAGGCAGCTGCATGTACTTCATGCTGCAC GGTGTGTATCTCGAAGTGTCTCGCGAGCGAGAAGACGACTCTATGCTAAA CAGATCAGGGCGATGGCGACCAGTCCAGAACTGCAAACGGTGAGCTGTTG TCTGCACGAGCTGTTAAGACTGGACCAGACCACTTACGAAAACACACTTG TGTGTTGTGTGTCGGATTGTTCACCCAACTGCTCCAACCAAGTCTTCGTT GTAAATTCTCGATATCTAGTACGTGTGGTATGCTACGGTGATACCGTTTG TCTCAGTCCCGGGCATGCGTATTTTTTCTCAAACTGAACGTTGCCTGTAG GGGCCTTGCTCCGTGAAAAAATAGTACATGCAATATTCCGTGCTCCCCGC GGGGGTAGGACAAAAATGTGCTACGGTATTCAATCTGTTCCTTTTTTTCT CGAGGCTCGCGTCTCTCGTTTACCCTAGCATCTAAAACGCCGCTAGAATG GGGGGGACGCACAACGGGGAAGCTTTAAGCACATCACGTTGCGTAAAGCG AGGGTGCGAGCGCAGTAAAGCACCTGTAAGGCACCAACTTGTTTTCGTTG GTCCGCGTGTATGTTCTTTTTGGATGTGTGTGAACACTGTTTACAGGGTA TCGCGAGAAAGCCGCCGGTAGTTTCTACGCGGCCTTCGTGATGTGTGATG AACGCCGTGCGAAATTTGCTGGCGGCCCATTCCAGAAAGGCACCAACAAA AGTGTCCACAAGCATATAGATCCATTCATGTGAAGTCACCGATGGTGTGG TTCATCATCTAGTTCAACAAATTTCTTCGCAGCTCGATCAATATAAGCAA AATAGGAGCCACGCCAATTTCCTTGAGTCCATGAAACTGAGAATACTGTC GTAAACTACGCACGTCCCGTTTTGAATGATGAAGATATTGGGAGGTGGAT CTCTGGGATACAATTTTCAGCGAGCTCCTGAACTCTGACTACCGGACAAC GGATACGACCGGCACCAACGAGACTCTCCTTCGCCTTGAAGAGTCGCTCA CCTCGTACCTGAACGTCGATCATCGGTCGCGCGACCTGAAGGACTGTCTC AGGAGGCAGGACAACATGATTTTCAACCGATAGTAAATCACTTTATGCGG AACCTATGGAGCGAGAAGAACACGGCGCTGTTACTGTATGAGTTATTCTG GGCTGCCGCGCCGTCGAAGGGAAAGCTGCGCTTGCTCGTGAAAGGCATCG CCGCCTCACACAAAGAAAGGTGGTGCAATGGCGTTATGGGTCTTTCCATC TCTGAATGTTCAATGGTGTGAGACGACGGGAGGGAGGAGTGGTTTTGTGT GGACATTGAATGGAACACGCTGCCGCATGGCGGGCGTAGCTTCCAAAGTG AGAACGTTCTTGGTGTAAATGCCACTAATTTTAAATACTCCGGGGTATAC GTTTTTTTACTGTCTACTTTCTTTCGAAGCTTCGATTGACGCCTCTTCGT GTCTATCCATCAAGTGAGAGCTGGTTCGGTGCCGCACCTGTTTGTCCATC CCTCTGGTAAAACGATTAGGTTATCTACATGCGTGCATACGGCCCCTCCT CGTGTGTGTCCGTCGGAGACAGGGCACTCTAGGATGCGGCGAGAGCGTAC ATATATAGAGGGAAGGTTCATTCCGATGACCCTTGTCTGGAAGGCGTAGA CTTTGTTGTCTCGAGAACTGCTGCTGATGTACTTCCTCCAATTCATACAG CAGTGTCATCTGCCACCACCAACGTTTATGTGCGGGCAGCAGGGTGTACT ATACAGCATGCACAAGCTTGTTGTCAAGTCAAGTGTGTGTGTATATTTGG TTACAATCCACATCATCACGAGGCAGCAGTACAATCGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6299:371..5758-

>mRNA_Ecto-sp13_S_contig6299.17038.1 ID=mRNA_Ecto-sp13_S_contig6299.17038.1|Name=mRNA_Ecto-sp13_S_contig6299.17038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1998bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6299:371..5758- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCACGCATGATTGTTTTGTCAACCACGGAGGCCACGACCCCCTGGA
AAAATCGATGAGCACTTTCCTGCATTTAGACGCCACAAGCACCACAAGCA
GCGACCTAAAGGAGGGCTTGTCGGAGATCCTGGAACGCTTTCAGACCGAC
CAGCGCTACCGCAACGACGAGCGATACCTCAAGCTCTGGATGCGCTACGC
CGACCTATCCGACGATGCCGATAAAGTGTTTCTGCTGCTGAAGTCGGCGG
GCATCGGCACGCAATTATCCTTATTTTGGGCAGCTTGGGCGTACGTTCTC
GAGATGGCCGAAGCATACGAGAGGGTGGCCCTGATAATAGCAGAGGGACG
TGCTTGGGGTGCCCAACCTGTGTCTCTCCTTGAAGAATTTCTACGCTCCT
TTCACGAAAGGATGCTTGAGAGGATGCGAATGGTGGGTCTAGATGCGCGG
ATAGGTGAAGTCAAGGAGGAGATCGACTTCGCCTCTACTCGCAGCAGTGA
ACAAGCCATGCTGCGCGCGAAGCAGTCCCAAACCGCGGCTCATGCGCAAC
GCGAGCACGCACCAGACAAGCCCAACATCAGCCAGCGCGAGCCAATCGAA
GGGATCAATAAATTGTGCACTGGTGGTGGAGGTGCTCATGGCTCAAGATG
CAGGCCTGTAGATGCCCCCCTCGGAGCTAGAGATGTCAATTCCCGCGATG
GAGCCGCGCTGAGACGTAAGGAATGCTCTACGAGGAACAGGCCAGACAGA
CTGCCACGGCCTCGCGTGGAAACCGACAAGACGGCCACCATCGCAACTGC
AACCTCCACACTAGTTCGTAATCCGTTCTCTGCGGACATGCGAAGACGCC
TCACAACCAACACCACGCAGTACCTTTGCTGGGCCAGCTCTTCCAGCATA
GTGTATGATTCTAGGCTCGACAGCTTGGCAAAAGTATGTCCTCGCCGGAT
GGCCAAGGTGAATGTTGGCTCACGTCGACCGGTCGCGTTGGCGAGGTCGC
TCGGAAACCAAAGGATCAATGTGCTGGGAGTACTTGGAGAGGGGGCTTTC
GCCGTGGTGTTTTCTTGCAAGTTCAGCAAGAACCAACGCGACGTGGCAGT
AAAAGTGGAGTATAAGGAAGAAGCACCATCACTTCCGTGGGAGTGCTTCA
TCACACTTCAACTGAGCGAGCGACTGTTGCATAGTCGCCAGAGGAAGATC
TGCAGCGTTACCGAGGCGCCAATTACGGTGGTTAAACCCGAGGCTCTTTT
CTTGTACCGCGATGGATGCGCGATGACGATGCCTGTGGGTCTGGCTGGCA
CGCTACACGATCTTGTCGCACTATACTCGAAAAGAGCACGGGCCGTACCG
CAGCTCGTTGCAATGCACTATGCAGTAGAGATGCTGCGCTTTTGTCGAGT
AATGCACTCGGCATCAATCCTGCACATGGACATCAAACCGGACAACTGGC
TGCTGGTACGTCGCCCCCGCAGTGAAGTGGACCGCACGGAGGAGATGGAA
CATGCTGGGGGCAAAGACCATTCCATGTCTTTGATCGATTTTGGAAGAGC
GATCGATCTCTCTGTTTTTCCCCAGAATGGATCGGATATGGCATTCACGG
GGCAGTGCTGCGCTCCGAGCTTTTCATGCCCGGCGATGAGGGAGGGCCTG
GCTTGGAAGCATGATGCCGATCTGTACGCTCTAGGCAGCTGCATGTACTT
CATGCTGCACGGTGTGTATCTCGAAGTGTCTCGCGAGCGAGAAGACGACT
CTATGCTAAACAGATCAGGGCGATGGCGACCAGTCCAGAACTGCAAACGA
TATTGGGAGGTGGATCTCTGGGATACAATTTTCAGCGAGCTCCTGAACTC
TGACTACCGGACAACGGATACGACCGGCACCAACGAGACTCTCCTTCGCC
TTGAAGAGTCGCTCACCTCGTACCTGAACGTCGATCATCGGTCGCGCGAC
CTGAAGGACTGTCTCAGGAGGCAGGACAACATGATTTTCAACCGATAG
back to top