mRNA_Ecto-sp13_S_contig627.17001.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig627.17001.1
Unique NamemRNA_Ecto-sp13_S_contig627.17001.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig627.17001.1 vs. uniprot
Match: D8LAW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAW4_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 2.250e-81
Identity = 124/136 (91.18%), Postives = 131/136 (96.32%), Query Frame = 3 
Query:  126 MSTIPSFLVGLVASGVGYAYLSRELVTSRNQLMFKHFEADGVEPYYPVRKMPRQFGRPNGERGGCPRGSSFNSETSRGIVSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDTIFSVLYGRGGATKGKAKGDDEPRD 533
            MSTIPSFLVGLVASGVGYAYLSR+LVTSRN+LM KHF+ADGVEPYYPVRKMPRQFGRP GERGGCPRGSSFNSETSRG+VSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDT+FS LYGRG AT+GKA+G DEPRD
Sbjct:    1 MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRD 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig627.17001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW4_ECTSI2.250e-8191.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig627contigEcto-sp13_S_contig627:9964..13114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2019
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006200.1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463870.8793583-UTR-Ecto-sp13_S_contig627:9963..100881681463870.8793583-UTR-Ecto-sp13_S_contig627:9963..10088Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig627 9964..10088 +
1681463870.9098828-UTR-Ecto-sp13_S_contig627:11634..131141681463870.9098828-UTR-Ecto-sp13_S_contig627:11634..13114Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig627 11635..13114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463870.8920236-CDS-Ecto-sp13_S_contig627:10088..102381681463870.8920236-CDS-Ecto-sp13_S_contig627:10088..10238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig627 10089..10238 +
1681463870.9008865-CDS-Ecto-sp13_S_contig627:11370..116341681463870.9008865-CDS-Ecto-sp13_S_contig627:11370..11634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig627 11371..11634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig627.17001.1prot_Ecto-sp13_S_contig627.17001.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig627 10089..11634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig627.17001.1

>prot_Ecto-sp13_S_contig627.17001.1 ID=prot_Ecto-sp13_S_contig627.17001.1|Name=mRNA_Ecto-sp13_S_contig627.17001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MSTIPSFLVGLVASGVGYAYLSRELVTSRNQLMFKHFEADGVEPYYPVRK
MPRQFGRPNGERGGCPRGSSFNSETSRGIVSGLPEPAPAGEHHLVTDART
KWNAAVLRCSDTIFSVLYGRGGATKGKAKGDDEPRDP*
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mRNA from alignment at Ecto-sp13_S_contig627:9964..13114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig627.17001.1 ID=mRNA_Ecto-sp13_S_contig627.17001.1|Name=mRNA_Ecto-sp13_S_contig627.17001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3151bp|location=Sequence derived from alignment at Ecto-sp13_S_contig627:9964..13114+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTATCTGTTGGGACCCAATCGTTTCGTGCTTCGCCGACTCCACTTTG
CCTAGCCACTGTTCAGGCTGGCGTGACATCTACTCCTGTCGGCTGTTTTC
GCACCACACCAGACGCGCAACAATCATGTCTACCATTCCGTCATTTCTTG
TGGGGCTGGTTGCCTCCGGAGTGGGCTATGCGTACCTGTCGCGCGAGCTG
GTCACCTCTAGGAATCAGCTAATGTTCAAGCACTTCGAGGCCGACGGGGT
CGAGCCCTACTACCCTGTGCGGAAGGTGATGTCCAGTACCGCTGTAGTGC
CTTGGGGTGCCACCCTACTTCACGGGGTTGGATGGAGTGAACTCGTAGTG
AGTTTGACTGTGTGGTTCCAACGGCAGTGTCATACACCTGGAGTTTTTGC
TGTTGTCGTTTGCATCCGGTGTCTGTAGAGGACATACAGATTTTGTCTGT
ACAGCAGTATAGGTTACTTAAACGTGTCCGCGTGTAGGGGACAACATGCT
GCTGTAGGGGTAAGAACTTGAAGGCACTGCTGCATATGGTCCGATACACC
GACACTCCCAGAATCTGTAGCACGCTGCCTGTGCGCCCCCATTACGAAAA
TAATCAGCAATCGCGGCAACGCTAGCATGTGGCGACTACTATGGTCATGA
TCATGTGGGATTATTTTAACTGACAAGTAGTAAACACTTCGAAAAGTTTC
TACTGAATACTGACTATTATAATAGGTGACTTCTGGCACCCCGCAAGCTT
CCGCAGACTACCAGCAAGTTCCCACACCAGTTTCAAATGGACCTGGCCTG
CTCTGCTAGTCGGTAAATACGTCACGACGTTGGCGATGTAGCTACAGCGT
GAGCGCCTACACCACTTCAAAGTTAGGGTTTGTGATGATGTACCGTAGGG
TGCTCGATCTTCACTTGTCTTCCTCGCACCCTCAACCGACTTTGTCGACG
AAGTCAGAGTGTCCACCAATGTTTTCGCATGTATTTCCGATGCAAAGGAC
AGGCGGGTTACATGTTTGCACTCCTCTAACTTCAGGGTTCCCTACAACAA
CTGCATGTACCCTGCAACACCTGACAACAAGAACGATGATTCCTACACCT
GATACTCACATATTCACCTGGCATTACCGATAACTCAGTATTAGGTTACA
CAAACTCAAAATAAGCCAAGTCTCTAGTTGGTTTCAATCCACTTCCTGAA
AAGACTTCACCGTATCTCCCTTTCGACGGAGGTTATATCGTGAACGGGTA
GTCTTTCTGTGAGGTTATATTTACTTTCGAAGTATAAATATTCACGTCCT
CTACTCCATGTGACCAGTTTTCCTCTTCATGTTGCGATCCTAGCCCGTTC
TTGCGATCCTGCCCCATTCCCTCGGTCGCCCTCCAAAAACGCTTGCTGCC
TTACCAGATGCCTCGCCAGTTCGGGAGACCAAACGGCGAGCGCGGCGGTT
GCCCGCGCGGTTCTAGCTTCAATTCGGAAACGAGCAGGGGGATCGTCAGT
GGTTTACCGGAACCCGCGCCAGCGGGTGAGCACCACCTCGTCACGGATGC
CCGCACCAAGTGGAACGCGGCTGTTTTGCGATGCTCCGATACGATATTCA
GCGTCTTGTATGGCCGCGGAGGTGCGACGAAGGGCAAGGCCAAGGGTGAT
GACGAACCACGGGATCCATGATGCCCCAGATAGGGAACAAGGTGGTGAGG
AGCGGGCCACGTTGCCGCAATGCGACTCTATTTTGTGGTGGGAGACAAGT
TTTGAGGTGGACAACAGGCGAGGGGAGACCAGAGGAAAAATGCGAATATA
TCCTTACCGTGGTCGCTCATTACGTCGGCGACGACAAGGCGATCACTGCT
TCTGGGAGAACAACGCGGGAAGGGAAGGGATAAGAGCTGCTTGCACATAA
GCCGAAAACTGTTCCGAAGGAGGTTGTTTACACCTCGTCAGGGCGCAGCC
TCTTTTCCAGTCGGACAAGGAAAGGCGTTTTGTGGGGAAGTAGGAGCGAC
GTTTCTGTGACACGACACCTACGGATATTTTGCTGCTGTGGCCAGAGGTT
GAGGTAGTTCACCAGGGTTTGGGGGTGGGAATACTTGAAAAGGGAGCTAT
AGTTCGTGATTTGAGTGCTTTTCTACTTTACAAGGGAGGGTCAACCTTTT
GCTGTTCGTTCGATTCGCGTCATGGCCCCCCGAACACGTACGGGTCAGCT
GGAGCCGCCTGTGTTCAACCAGCTTGAGCTATTTAGTACGTATGTCCTTC
AGGTGTTGCATTAAGCGTGTAAATAGGAGTGCGGTGTTCTTGCCCCCGCG
TGCTCGCTGAAGTGGCGGGCTCTGTGTGCATATCCGCAACTTTGGAGTGA
ACGGATTCGTGGTAGAGCTGTGAACGCTCGAAATATGGCCCTATCTGGAG
TGGTTGCCATTTTCTTGGACGGGCCTCTTGGATTTGTTTTCAGCACCGTC
AAATTTTCAAGTATGCATCTAGATATCTCGTGCGTGTCGTCTCTTGTTTT
CGCTCTGTCAAATCCCCTTGGTCTCCAGCTCCGGTGCACTGCTCTGTCTT
TTGTTTTTGTTTGGTTGCAAAATGAACAGCTGCTGGAGCCGATATAGTTT
GGTCTGTGTAGGCGTGCAGTTCGCTCGTGTGAATTCTACATTACATTCCA
CAATGTCGGCTTCACGAAGAGATCACGGGGGGGTGTCCCGTTCTCATTTT
GTGACGTTGAACGGCATCGAGCCAGGACTTCGGCTTCTCTCACTCAACAT
GTTACACAGCAGCAGTGCAGCACGTGTTTTAAGGCTTGGCATGCACACGC
TAGACATCACCAGGAAAGGGTGTCCAGTCCGCCTGTTTGTGAGATCGTTT
TCTTACTACCAACGATCCGAGTGTGGGTGATGCGCAGAGTAGCTGGCATT
CACGGGGCGACGGAGGAACAGCACAAAAAATTACAACGGTGCACAGACAT
GCTACGCCTACTTGAATATGCGCCACGACACCACTCCCAACTTGGAATGT
GTGCAAGGAGAAAAACAATGAAAACGCCAACGGCAGATGAAGCATGTGGC
TCTCTGATCAGGAAGAGTCGACATATTGGTAGCGGTTGGGAAGTACAGTA
AGGCGAGAAGACCACTTGCATGCTTTGGCGTGCCCAGTCCCCAGCTCCCA
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig627:9964..13114+

>mRNA_Ecto-sp13_S_contig627.17001.1 ID=mRNA_Ecto-sp13_S_contig627.17001.1|Name=mRNA_Ecto-sp13_S_contig627.17001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig627:9964..13114+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTACCATTCCGTCATTTCTTGTGGGGCTGGTTGCCTCCGGAGTGGG
CTATGCGTACCTGTCGCGCGAGCTGGTCACCTCTAGGAATCAGCTAATGT
TCAAGCACTTCGAGGCCGACGGGGTCGAGCCCTACTACCCTGTGCGGAAG
ATGCCTCGCCAGTTCGGGAGACCAAACGGCGAGCGCGGCGGTTGCCCGCG
CGGTTCTAGCTTCAATTCGGAAACGAGCAGGGGGATCGTCAGTGGTTTAC
CGGAACCCGCGCCAGCGGGTGAGCACCACCTCGTCACGGATGCCCGCACC
AAGTGGAACGCGGCTGTTTTGCGATGCTCCGATACGATATTCAGCGTCTT
GTATGGCCGCGGAGGTGCGACGAAGGGCAAGGCCAAGGGTGATGACGAAC
CACGGGATCCATGA
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