mRNA_Ecto-sp13_S_contig62337.16961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62337.16961.1
Unique NamemRNA_Ecto-sp13_S_contig62337.16961.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62337.16961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62337contigEcto-sp13_S_contig62337:135..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size506
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463867.687608-UTR-Ecto-sp13_S_contig62337:134..1451681463867.687608-UTR-Ecto-sp13_S_contig62337:134..145Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62337 135..145 +
1681463867.712474-UTR-Ecto-sp13_S_contig62337:550..6401681463867.712474-UTR-Ecto-sp13_S_contig62337:550..640Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62337 551..640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463867.7001648-CDS-Ecto-sp13_S_contig62337:145..5501681463867.7001648-CDS-Ecto-sp13_S_contig62337:145..550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62337 146..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62337.16961.1prot_Ecto-sp13_S_contig62337.16961.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62337 146..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62337.16961.1

>prot_Ecto-sp13_S_contig62337.16961.1 ID=prot_Ecto-sp13_S_contig62337.16961.1|Name=mRNA_Ecto-sp13_S_contig62337.16961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MKRCPVPTTDDRCQECPPNLSQKRFRVPTAKVDTGTAHTFLSTCTHVRSK
SSTRRCRVHAHPNRMPSGTRPVSVLPRGVERGRNIEVLSATCRWDPITTR
KHSALEVTDDLKARRGSNPNRVGVRPGDNESRNL*
back to top

mRNA from alignment at Ecto-sp13_S_contig62337:135..640+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62337.16961.1 ID=mRNA_Ecto-sp13_S_contig62337.16961.1|Name=mRNA_Ecto-sp13_S_contig62337.16961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=506bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62337:135..640+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCTTGATGCATGAAACGGTGCCCGGTCCCGACAACCGACGACAGGTGT
CAAGAATGCCCACCAAATTTGTCTCAAAAAAGATTTCGTGTACCCACCGC
CAAGGTGGATACCGGCACGGCACACACTTTCCTCTCTACTTGTACTCACG
TACGCTCGAAAAGTTCGACCCGTCGTTGTCGAGTCCATGCCCATCCAAAT
CGTATGCCATCCGGTACCCGTCCTGTGTCGGTGTTGCCGCGCGGTGTTGA
GCGCGGCCGAAATATTGAAGTGTTGTCCGCCACTTGTAGATGGGACCCTA
TCACGACCAGAAAACATTCAGCCTTGGAGGTGACTGACGACCTAAAAGCA
CGTCGTGGTTCGAACCCCAACCGAGTTGGTGTTCGCCCGGGAGATAACGA
GAGCCGAAATCTGTAGAGCCTGCACAACGGCCACCAGGTTTTGTTGGCTG
TGGTCACGGACCGGGAAGCACCAAACGCAGGCCGCATGGCCGCGCGTGTA
GATGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62337:135..640+

>mRNA_Ecto-sp13_S_contig62337.16961.1 ID=mRNA_Ecto-sp13_S_contig62337.16961.1|Name=mRNA_Ecto-sp13_S_contig62337.16961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62337:135..640+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACGGTGCCCGGTCCCGACAACCGACGACAGGTGTCAAGAATGCCC
ACCAAATTTGTCTCAAAAAAGATTTCGTGTACCCACCGCCAAGGTGGATA
CCGGCACGGCACACACTTTCCTCTCTACTTGTACTCACGTACGCTCGAAA
AGTTCGACCCGTCGTTGTCGAGTCCATGCCCATCCAAATCGTATGCCATC
CGGTACCCGTCCTGTGTCGGTGTTGCCGCGCGGTGTTGAGCGCGGCCGAA
ATATTGAAGTGTTGTCCGCCACTTGTAGATGGGACCCTATCACGACCAGA
AAACATTCAGCCTTGGAGGTGACTGACGACCTAAAAGCACGTCGTGGTTC
GAACCCCAACCGAGTTGGTGTTCGCCCGGGAGATAACGAGAGCCGAAATC
TGTAG
back to top