mRNA_Ecto-sp13_S_contig6212.16933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: D7G250_ECTSI (AAA_23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G250_ECTSI) HSP 1 Score: 491 bits (1265), Expect = 3.320e-172 Identity = 266/271 (98.15%), Postives = 269/271 (99.26%), Query Frame = 1
Query: 1 VGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDAKLAAVADEIQFYADEADRCRERAEAAKKEKDRLQGEQGSVQAQLAQQ 813
VGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYS LR+EIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDA+LAAVADEIQFYADEADRCRERAEAAKK+KDRLQGEQGSVQAQL QQ
Sbjct: 92 VGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSTLRQEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDARLAAVADEIQFYADEADRCRERAEAAKKKKDRLQGEQGSVQAQLTQQ 362
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A6H5L8V1_9PHAE (AAA_23 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8V1_9PHAE) HSP 1 Score: 345 bits (884), Expect = 1.340e-111 Identity = 193/223 (86.55%), Postives = 196/223 (87.89%), Query Frame = 1
Query: 145 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDAKLAAVADEIQFYADEADRCRERAEAAKKEKDRLQGEQGSVQAQLAQQ 813
IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKAL+NIKKTKQEYAS VKELKVDLAALQERLRAANDLKEEMDASTETYSNLR RAVADEVRMLE RKQSLLLACRDLDVRM EKR+NIGDGEMSSESDETL KNLQEFD KLA VADEIQFYADEADRCRERAEAAKK+KDRLQGEQGSVQAQL QQ
Sbjct: 90 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALENIKKTKQEYASAVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRXXXXXXXXXXXXXXXXXXXXRAVADEVRMLEERKQSLLLACRDLDVRMTEKRDNIGDGEMSSESDETLRKNLQEFDDKLAVVADEIQFYADEADRCRERAEAAKKKKDRLQGEQGSVQAQLTQQ 312
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A8J2S5K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5K6_9STRA) HSP 1 Score: 176 bits (445), Expect = 3.090e-46 Identity = 112/268 (41.79%), Postives = 158/268 (58.96%), Query Frame = 1
Query: 7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACR----DLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDAKLAAVADEIQFYADEADRCRERAEAAKKEKDRLQGEQGSVQA 798
VV+RS QLTQK+ T FK LDGVIR G S HKC E+DK +P+ +GVS+A+LE+V+FCHQED+SWPLQEGAV+KK+FDDIF+SARYTKALD + K K+ AS K++ DL L AA D + ++ + + I+A D + L + EK R + D++R L+ ++Q L CR L+ + E + D + E D+ L+ + + D I+ E + RE AE A+KE R+ GE+GS +A
Sbjct: 94 VVVRSMQLTQKKTTATFKQLDGVIRATKPDGSKTSYTHKCGELDKTVPIMIGVSRAVLESVIFCHQEDSSWPLQEGAVLKKRFDDIFDSARYTKALDVLNKQKKGLASKAKDISGDLKGLHADKVAAQDHLKRKASAEKAIQSADASIKACDDKQGSLRD--EKSR-INDKLRKLQAQEQGLQ-ECRAEVDGLERSLKYLEERLADSALMDEDDDVLAATAARLQEEEDSQFDIIRKLEREEGKHRELAEQARKEASRVDGEKGSAEA 357
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A1V9ZB00_9STRA (DNA repair protein RAD50 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB00_9STRA) HSP 1 Score: 174 bits (441), Expect = 1.040e-45 Identity = 106/248 (42.74%), Postives = 155/248 (62.50%), Query Frame = 1
Query: 7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMD-------ASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLE----GRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLS-KNLQEFDAKLAAVADEIQFYAD 714
VV R+F+L Q + + +F+A+DGV+R N+ G+ VSIN KC+E+DKHIP LGVSKA+LE+V+FCHQE+++WPLQEGAV+KK+FDDIFESARYTKAL+ IKK K+E + K++K DL L E+++ D++E+++ A Y + EI + AR E L +R VA VR LE + + A R L M E ++ + + +S T+ K + E +A+ AA+ +Q D
Sbjct: 94 VVQRTFRLQQMKASCKFQAMDGVVRMINDHGEKVSINQKCSELDKHIPDLLGVSKAVLESVIFCHQEESNWPLQEGAVLKKRFDDIFESARYTKALEAIKKLKKERLAMAKDMKRDLDVLGEQVKRVRDMEEQLETREAKLLALKADYETMSGEIGQLAARVTETDAELAHVRDVAAHVRELERTAAAKSDEMARAFRSLGPEMTESTASLEEILANYDSILTIKHKEVLEIEAQEAALTAAVQAADD 341
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A662WHK9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK9_9STRA) HSP 1 Score: 172 bits (437), Expect = 3.560e-45 Identity = 101/227 (44.49%), Postives = 150/227 (66.08%), Query Frame = 1
Query: 7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDG-----EMSSESDETLSKNLQEFDA 672
VV R++Q+ Q + ++QFKALDGVIR NE G+ VS+ HKC E+D+HIP +GVSKAIL++V+FCHQE+A+WPLQEGAV+KK+FDDIFESARYTKAL+ I+K K+ K+ K DLA L ++ A +++++++A+ +T + +E E A+ E+LE++ + E+ EG +L + DV A+K I + +M S++DE L L +DA
Sbjct: 94 VVQRTYQVRQLKASVQFKALDGVIRVVNELGEKVSMGHKCGELDRHIPDMMGVSKAILDSVIFCHQEEANWPLQEGAVLKKRFDDIFESARYTKALEAIRKLKKARNDDTKDYKRDLAVLTVNMKTAENIRDKIEAAEDTLRAVSEEREKAGDAVAQAQETLEEMERLQSEI---EGHHNAL--ERQQCDV--AQKEATIKNAYAKIEQMMSDTDEELEALLNNYDA 313
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A1E7F3C8_9STRA (AAA_23 domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3C8_9STRA) HSP 1 Score: 160 bits (404), Expect = 4.160e-45 Identity = 75/114 (65.79%), Postives = 94/114 (82.46%), Query Frame = 1
Query: 7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELK 348
V++RS ++TQK+ T+ FK LDG +RT N +G+ ++++HKCTE+D+ IPL LGVSKAILENVVFCHQEDASWPLQEGAV+KKKFDDIF+S RYTKALD K K+EY K+ K
Sbjct: 93 VIVRSMEVTQKKTTMTFKQLDGNLRTVNNTGERIAMSHKCTELDRQIPLMLGVSKAILENVVFCHQEDASWPLQEGAVLKKKFDDIFDSTRYTKALDVFSKAKKEYVLKAKDHK 206
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A8K1CBI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBI4_PYTOL) HSP 1 Score: 171 bits (434), Expect = 9.010e-45 Identity = 84/172 (48.84%), Postives = 124/172 (72.09%), Query Frame = 1
Query: 7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEV 522
VV R+FQL Q + Q+KALDGV+R NE G+ VS++HKC E+D+HIP LGVSKAILE+V+FCHQED++WPLQEGAV+KK+FDDIFESARYTKAL+ I+K ++ KE K +L L +L+ A +++E+++ + E S ++ + +D +L +++ ++DE+
Sbjct: 94 VVQRTFQLVQTKSKTQYKALDGVVRVVNELGEKVSMSHKCAELDRHIPEMLGVSKAILESVIFCHQEDSNWPLQEGAVLKKRFDDIFESARYTKALEAIRKLRKARNDDAKEFKRELDVLNVKLKMAEEIREKIEVAEEKLSRMKDKAAQLDDSVDNAENTLREMKQLSDEI 265
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A2P4XQ47_9STRA (DNA repair protein RAD50 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQ47_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.160e-44 Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = 1
Query: 7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTE 423
VV R++Q+ Q +K LQFKALDGVIR NE G+ VS+NHKC E+D+HIP LGVSKAILE+V+FCHQED++WPL+EGA +KK+FD+IFESARYTKAL+ I+K K+ K+ K DL L ++AA D++++++ + E
Sbjct: 94 VVNRTYQVRQTKKALQFKALDGVIRVVNELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFESARYTKALEAIRKLKKARLDNAKDYKRDLDVLTVNMKAAGDIRDKIELAQE 232
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A7S4KCM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCM0_9STRA) HSP 1 Score: 163 bits (413), Expect = 3.200e-44 Identity = 93/227 (40.97%), Postives = 140/227 (61.67%), Query Frame = 1
Query: 7 VVIRSFQLTQKRKTLQFKALDGVIRTKN-ESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDAKLAA 684
VV+RS +LTQK+ T+QFKALDG++RT + +G+ V+++HKC E+D+ IP +GVSK ILE+VVF HQED+SWPLQ+ A +K+KFDDIF+S RY KAL+ I+K++ EYA+ KE K +L+ L AA ++E D + + + + +++ A D SE K V +E++ L R L + A KR + + ++ E L L FD ++A
Sbjct: 95 VVVRSMELTQKKTTMQFKALDGILRTNDPNTGERVALSHKCGELDRQIPTLMGVSKPILEHVVFTHQEDSSWPLQDAASLKRKFDDIFDSTRYAKALEAIRKSRLEYANVAKEHKSELSGLASHKHAAEGFRQETDMARDELAEIDEKMAACDESIERESEKRSKYERVLNEMQELSDRAGDLRNETERDETIAASKRSMLEEDWTDEQTSERLEAMLSGFDDVISA 321
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: M4BIK8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIK8_HYAAE) HSP 1 Score: 169 bits (428), Expect = 5.580e-44 Identity = 102/225 (45.33%), Postives = 145/225 (64.44%), Query Frame = 1
Query: 7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVR----MLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFD 669
VV R+FQ+ Q +K+LQFKALDGVIR NE G+ VS++HKC E+D+HIP LGVSKAI+ENV+FCHQEDA+WPL+EGA +KK+FD IFESARYTKAL+ I+K K+ K+ K DL L ++ A ++ +DA E R+E A A + LE+L+ + EV+ L+ R++ ++L + + R K ENI S++D+ L L +++
Sbjct: 2 VVQRTFQVRQTQKSLQFKALDGVIRVVNEVGEKVSLSHKCGELDQHIPDMLGVSKAIIENVIFCHQEDANWPLREGAELKKRFDQIFESARYTKALEAIRKLKKARLDQTKDYKRDLDVLTVNMKTAETIRVSLDARQEQLQQARREEGAGREEIASAGKMLEELQVLQTEVKRVHEQLKRREEDVVLKEQSV-WRAYSKIENI-----MSDTDDELQGVLNDYE 220 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6212.16933.1 >prot_Ecto-sp13_S_contig6212.16933.1 ID=prot_Ecto-sp13_S_contig6212.16933.1|Name=mRNA_Ecto-sp13_S_contig6212.16933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp VGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPback to top mRNA from alignment at Ecto-sp13_S_contig6212:5155..8370+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6212.16933.1 ID=mRNA_Ecto-sp13_S_contig6212.16933.1|Name=mRNA_Ecto-sp13_S_contig6212.16933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6212:5155..8370+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6212:5155..8370+ >mRNA_Ecto-sp13_S_contig6212.16933.1 ID=mRNA_Ecto-sp13_S_contig6212.16933.1|Name=mRNA_Ecto-sp13_S_contig6212.16933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6212:5155..8370+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |