mRNA_Ecto-sp13_S_contig62034.16922.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62034.16922.1
Unique NamemRNA_Ecto-sp13_S_contig62034.16922.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: D8LDV8_ECTSI (Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.090e-18
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS 129
            VERLGELLK+GELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS
Sbjct:   38 VERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS 80
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S0ANE5_9STRA (Ribose-5-phosphate isomerase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ANE5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.850e-18
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS 129
            VER+GELLK+GELKDIV IPTS+RTKEQAESLDIPLVTLDTHS
Sbjct:   41 VERVGELLKSGELKDIVCIPTSVRTKEQAESLDIPLVTLDTHS 83
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S3A262_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A262_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 1.230e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH 126
            VERLGE LK+GELKDIVAIPTSIRTKEQAE LDIPLVTLDTH
Sbjct:   77 VERLGEKLKSGELKDIVAIPTSIRTKEQAEGLDIPLVTLDTH 118
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S1TKQ2_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKQ2_9RHOD)

HSP 1 Score: 78.6 bits (192), Expect = 2.450e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH 126
            VERLGE LK+GELKDIVAIPTSIRTKEQAESLDIPLVTLDTH
Sbjct:   88 VERLGEKLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH 129
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S3A353_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A353_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 3.110e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH 126
            VERLGE LK+GELKDIVAIPTSIRTKEQAE LDIPLVTLDTH
Sbjct:   77 VERLGEKLKSGELKDIVAIPTSIRTKEQAEGLDIPLVTLDTH 118
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S0T664_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T664_9RHOD)

HSP 1 Score: 77.4 bits (189), Expect = 7.020e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH 126
            VERLG+ LK+GELKDIVAIPTSIRTKEQAESLDIPLVTLDTH
Sbjct:   93 VERLGQKLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH 134
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S1WNQ4_ALECA (Ribose-5-phosphate isomerase n=2 Tax=Sar TaxID=2698737 RepID=A0A7S1WNQ4_ALECA)

HSP 1 Score: 76.6 bits (187), Expect = 7.400e-16
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS 129
            VER+GELLK+GELKDI+AIPTSIRTKEQAESL IPL TLDTHS
Sbjct:   37 VERVGELLKSGELKDIIAIPTSIRTKEQAESLGIPLATLDTHS 79
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S3A473_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A473_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 8.150e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH 126
            VERLGE LK+GELKDIVAIPTSIRTKEQAE LDIPLVTLDTH
Sbjct:   77 VERLGEKLKSGELKDIVAIPTSIRTKEQAEGLDIPLVTLDTH 118
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S2W0Z9_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0Z9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.780e-16
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS 129
            VERLG+LL++GELKDIVAIPTSIRTKEQAESL IPLVTLDTHS
Sbjct:   85 VERLGQLLESGELKDIVAIPTSIRTKEQAESLKIPLVTLDTHS 127
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BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Match: A0A7S0CHS3_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHS3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.170e-15
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS 129
            VERLG+LL +GELKDIVAIPTSIRTKEQAESL IPLVTLDTHS
Sbjct:   72 VERLGQLLSSGELKDIVAIPTSIRTKEQAESLGIPLVTLDTHS 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62034.16922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDV8_ECTSI4.090e-1897.67Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus si... [more]
A0A7S0ANE5_9STRA5.850e-1890.70Ribose-5-phosphate isomerase (Fragment) n=1 Tax=Mi... [more]
A0A7S3A262_9RHOD1.230e-1692.86Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A7S1TKQ2_9RHOD2.450e-1695.24Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A7S3A353_9RHOD3.110e-1692.86Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A7S0T664_9RHOD7.020e-1692.86Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A7S1WNQ4_ALECA7.400e-1688.37Ribose-5-phosphate isomerase n=2 Tax=Sar TaxID=269... [more]
A0A7S3A473_9RHOD8.150e-1692.86Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A7S2W0Z9_9STRA9.780e-1690.70Ribose-5-phosphate isomerase n=1 Tax=Eucampia anta... [more]
A0A7S0CHS3_9STRA1.170e-1590.70Ribose-5-phosphate isomerase n=1 Tax=Proboscia ine... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62034contigEcto-sp13_S_contig62034:394..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.8
Seed ortholog evalue4.3e-14
Seed eggNOG ortholog2880.D8LDV8
Preferred nameRPI2
Model size129
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons1
EggNOG free text desc.ribose-5-phosphate isomerase activity
EggNOG OGsCOG0120@1,KOG3075@2759
EC5.3.1.6
Cds size129
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463864.0659735-CDS-Ecto-sp13_S_contig62034:393..5221681463864.0659735-CDS-Ecto-sp13_S_contig62034:393..522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62034 394..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62034.16922.1prot_Ecto-sp13_S_contig62034.16922.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62034 394..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62034.16922.1

>prot_Ecto-sp13_S_contig62034.16922.1 ID=prot_Ecto-sp13_S_contig62034.16922.1|Name=mRNA_Ecto-sp13_S_contig62034.16922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
VERLGELLKNGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS
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mRNA from alignment at Ecto-sp13_S_contig62034:394..522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62034.16922.1 ID=mRNA_Ecto-sp13_S_contig62034.16922.1|Name=mRNA_Ecto-sp13_S_contig62034.16922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62034:394..522- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGCGCCTTGGGGAGCTGCTTAAGAACGGCGAGCTGAAGGACATTGT
GGCCATCCCCACGTCCATCCGCACCAAGGAGCAGGCGGAGTCCCTTGACA
TCCCGCTCGTGACGCTCGACACCCACTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62034:394..522-

>mRNA_Ecto-sp13_S_contig62034.16922.1 ID=mRNA_Ecto-sp13_S_contig62034.16922.1|Name=mRNA_Ecto-sp13_S_contig62034.16922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62034:394..522- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGCGCCTTGGGGAGCTGCTTAAGAACGGCGAGCTGAAGGACATTGT
GGCCATCCCCACGTCCATCCGCACCAAGGAGCAGGCGGAGTCCCTTGACA
TCCCGCTCGTGACGCTCGACACCCACTCC
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