mRNA_Ecto-sp13_S_contig61903.16899.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61903.16899.1
Unique NamemRNA_Ecto-sp13_S_contig61903.16899.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61903.16899.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.710e-37
Identity = 75/80 (93.75%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:    1 FPPGEEDGPVRGGDGGDALVKKASAGGVVDAAGQEKDSAGDETVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVL 240
            FPPGEEDGPV  GDGGD LVKKASAG VVDAAGQEKDSAGDE VSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVL
Sbjct:  678 FPPGEEDGPVGSGDGGDVLVKKASAGSVVDAAGQEKDSAGDEAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVL 757
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BLAST of mRNA_Ecto-sp13_S_contig61903.16899.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.810e-36
Identity = 73/80 (91.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 FPPGEEDGPVRGGDGGDALVKKASAGGVVDAAGQEKDSAGDETVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVL 240
            FPPG+EDGPV  GDGGDALVKKASAG VVDAAGQ  DSAGDE VSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVL
Sbjct: 1589 FPPGQEDGPVSSGDGGDALVKKASAGSVVDAAGQGNDSAGDEAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVL 1668
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61903.16899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4T0_9PHAE1.710e-3793.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L6_ECTSI3.810e-3691.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61903contigEcto-sp13_S_contig61903:94..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size242
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463862.1613662-CDS-Ecto-sp13_S_contig61903:93..2511681463862.1613662-CDS-Ecto-sp13_S_contig61903:93..251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61903 94..251 +
1681463862.1799648-CDS-Ecto-sp13_S_contig61903:615..6971681463862.1799648-CDS-Ecto-sp13_S_contig61903:615..697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61903 616..697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61903.16899.1prot_Ecto-sp13_S_contig61903.16899.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61903 94..697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61903.16899.1

>prot_Ecto-sp13_S_contig61903.16899.1 ID=prot_Ecto-sp13_S_contig61903.16899.1|Name=mRNA_Ecto-sp13_S_contig61903.16899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
FPPGEEDGPVRGGDGGDALVKKASAGGVVDAAGQEKDSAGDETVSSEYMT
ALGFVKVREEADPFSMDLGSVKKGDIVKVL
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mRNA from alignment at Ecto-sp13_S_contig61903:94..697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61903.16899.1 ID=mRNA_Ecto-sp13_S_contig61903.16899.1|Name=mRNA_Ecto-sp13_S_contig61903.16899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=604bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61903:94..697+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCCGCCGGGCGAAGAAGATGGACCTGTTCGCGGTGGCGACGGCGGGGA
CGCTCTCGTCAAGAAGGCATCGGCAGGAGGTGTCGTCGACGCAGCGGGGC
AGGAGAAGGATTCGGCTGGGGATGAGACTGTGTCTTCGGAGTACATGACG
GCATTGGGGTGAGTTTGATGTTCGACGTGTTCACTTTTGTTCTACCGGTC
ATGCCGGTAGTAGTCCGTACGTCCAGACGAAAGCGTTGTGGTTGAAGGGA
GGGGACCGTGGCGGGGAAAGTCAGGCCAGTCTCCTGGCATGGAGGGTGAG
ATCGTACGGTATTTTGCATCAAAAACCCCCCGTCAGCCTTCCTCTTTTGT
TTTTTGGGTGTATGTGTAGGATTTGTCCCCCGTGACCTTTCATCCATACC
ACCGAACGAGATTGTTCTGCAGGCCGAAGTCCAATTTCGGCGTGGCGCAG
GGAGCTGTTTTGACTTGCGCCTCACCCTGCCTACGTGTAACCCCTGATTT
TGCTAATAACACTCACAACAAGGTTCGTGAAAGTACGGGAAGAGGCGGAC
CCTTTCTCGATGGACCTGGGGAGCGTGAAGAAAGGAGACATTGTCAAGGT
GCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61903:94..697+

>mRNA_Ecto-sp13_S_contig61903.16899.1 ID=mRNA_Ecto-sp13_S_contig61903.16899.1|Name=mRNA_Ecto-sp13_S_contig61903.16899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61903:94..697+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCCGCCGGGCGAAGAAGATGGACCTGTTCGCGGTGGCGACGGCGGGGA
CGCTCTCGTCAAGAAGGCATCGGCAGGAGGTGTCGTCGACGCAGCGGGGC
AGGAGAAGGATTCGGCTGGGGATGAGACTGTGTCTTCGGAGTACATGACG
GCATTGGGGTTCGTGAAAGTACGGGAAGAGGCGGACCCTTTCTCGATGGA
CCTGGGGAGCGTGAAGAAAGGAGACATTGTCAAGGTGCTG
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