mRNA_Ecto-sp13_S_contig61885.16893.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61885.16893.1
Unique NamemRNA_Ecto-sp13_S_contig61885.16893.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: A0A6H5K8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P7_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.020e-29
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    1 YYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            YYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR
Sbjct:  447 YYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 495          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: D7FKT5_ECTSI (Alpha-L-fucosidase, family GH95 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT5_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.020e-29
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    1 YYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            YYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR
Sbjct:  868 YYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 916          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: A0A7S1H9J3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H9J3_HEMAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.310e-13
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    4 YRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            Y A GWV+H  TD W G +  GD  W+LC TCGAWMALHLWE + +TR
Sbjct:  100 YGAKGWVAHGFTDIWMGASPLGDTAWSLCVTCGAWMALHLWERFRFTR 147          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: A0A7S0QTJ0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTJ0_9CRYP)

HSP 1 Score: 69.7 bits (169), Expect = 1.180e-12
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   16 GWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            GWV+H  TD W      GDA+WALCPTCGAW+ALHLWE + + R
Sbjct:  119 GWVAHGFTDIWMNARPLGDAMWALCPTCGAWLALHLWERFAFRR 162          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: A0A7S3YGH4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGH4_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 1.570e-12
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 YYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEY 141
            YYR  GWV+H  TD W     H +  W+LCPTCGAW AL LWEAY +
Sbjct:   86 YYRCPGWVAHGFTDLWAEGGLHSNIEWSLCPTCGAWAALALWEAYTH 132          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: A0A7S1MX31_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MX31_HEMAN)

HSP 1 Score: 66.2 bits (160), Expect = 5.960e-12
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    4 YRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            Y A GWV+H  TD W  T   G + WALCPTCGAWMAL  WE + +TR
Sbjct:   81 YGAKGWVAHGFTDIWMDTKPVGGSRWALCPTCGAWMALQQWENFRFTR 128          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: A0A494Y0I6_9BACL (Glycoside hydrolase family 95 protein n=1 Tax=Cohnella endophytica TaxID=2419778 RepID=A0A494Y0I6_9BACL)

HSP 1 Score: 65.1 bits (157), Expect = 5.120e-11
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 YYRAGGWVSHANTDRWGGTA-----AHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            +Y A GW +H NTD WG TA      HGDAVWAL P  G W+A HLWE Y + R
Sbjct:  404 HYGAQGWTAHHNTDIWGHTAPVGDYGHGDAVWALWPMGGPWVAQHLWEHYAFGR 457          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: A0A7X7T8L0_9BACT (Glycoside hydrolase family 95 protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7X7T8L0_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    4 YRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            Y AGGWV+H NTD W  TA      W + P  GAW+ LHLW+ Y+Y+R
Sbjct:  424 YNAGGWVTHHNTDLWRATAPIDGPQWGMWPMGGAWLCLHLWDRYDYSR 471          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: A0A328TSL9_9BACL (Glycoside hydrolase family 95 protein n=1 Tax=Paenibacillus montanisoli TaxID=2081970 RepID=A0A328TSL9_9BACL)

HSP 1 Score: 62.4 bits (150), Expect = 4.570e-10
Identity = 29/54 (53.70%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    1 YYRAGGWVSHANTDRWGGTA-----AHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            +Y A GW +H NTD WG TA       GDAVWAL P  G W+A HLWE Y + R
Sbjct:  405 HYGARGWTAHHNTDIWGHTAPVGDFGQGDAVWALWPMGGPWLAQHLWEHYAFGR 458          
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Match: UPI0019349962 (glycoside hydrolase N-terminal domain-containing protein n=1 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI0019349962)

HSP 1 Score: 62.4 bits (150), Expect = 4.570e-10
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    4 YRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 147
            Y A GWV+H NTD W  TA      W + PT GAW+ LHLW+ Y+Y+R
Sbjct:  462 YDARGWVTHHNTDLWRATAPIDGTKWGMWPTGGAWLCLHLWDRYDYSR 509          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61885.16893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8P7_9PHAE2.020e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKT5_ECTSI2.020e-29100.00Alpha-L-fucosidase, family GH95 n=1 Tax=Ectocarpus... [more]
A0A7S1H9J3_HEMAN1.310e-1360.42Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0QTJ0_9CRYP1.180e-1261.36Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3YGH4_HETAK1.570e-1257.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1MX31_HEMAN5.960e-1258.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A494Y0I6_9BACL5.120e-1155.56Glycoside hydrolase family 95 protein n=1 Tax=Cohn... [more]
A0A7X7T8L0_9BACT1.790e-1052.08Glycoside hydrolase family 95 protein n=1 Tax=Phyc... [more]
A0A328TSL9_9BACL4.570e-1053.70Glycoside hydrolase family 95 protein n=1 Tax=Paen... [more]
UPI00193499624.570e-1052.08glycoside hydrolase N-terminal domain-containing p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61885contigEcto-sp13_S_contig61885:369..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score118.6
Seed ortholog evalue8.2e-25
Seed eggNOG ortholog2880.D7FKT5
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.1,2-alpha-L-fucosidase activity
EggNOG OGs2CMG6@1,2QQ9E@2759
Cds size150
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463861.6931999-CDS-Ecto-sp13_S_contig61885:368..5181681463861.6931999-CDS-Ecto-sp13_S_contig61885:368..518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61885 369..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61885.16893.1prot_Ecto-sp13_S_contig61885.16893.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61885 369..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61885.16893.1

>prot_Ecto-sp13_S_contig61885.16893.1 ID=prot_Ecto-sp13_S_contig61885.16893.1|Name=mRNA_Ecto-sp13_S_contig61885.16893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
YYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR*
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mRNA from alignment at Ecto-sp13_S_contig61885:369..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61885.16893.1 ID=mRNA_Ecto-sp13_S_contig61885.16893.1|Name=mRNA_Ecto-sp13_S_contig61885.16893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61885:369..518+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTACCGTGCCGGAGGCTGGGTTTCCCACGCCAACACCGATAGGTGGGG GGGGACGGCCGCTCACGGTGACGCGGTCTGGGCCCTGTGTCCCACGTGCG GGGCGTGGATGGCCCTCCACCTATGGGAGGCTTACGAATACACCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61885:369..518+

>mRNA_Ecto-sp13_S_contig61885.16893.1 ID=mRNA_Ecto-sp13_S_contig61885.16893.1|Name=mRNA_Ecto-sp13_S_contig61885.16893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61885:369..518+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTACCGTGCCGGAGGCTGGGTTTCCCACGCCAACACCGATAGGTGGGG
GGGGACGGCCGCTCACGGTGACGCGGTCTGGGCCCTGTGTCCCACGTGCG
GGGCGTGGATGGCCCTCCACCTATGGGAGGCTTACGAATACACCAGGTGA
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