mRNA_Ecto-sp13_S_contig61536.16849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61536.16849.1
Unique NamemRNA_Ecto-sp13_S_contig61536.16849.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: D7G035_ECTSI (ThiF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G035_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.070e-23
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 141
            MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG
Sbjct:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 47
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: A0A6H5KYD4_9PHAE (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.370e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 141
            MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG
Sbjct:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 47
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: A0A8J2S875_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S875_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.540e-16
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPGWSVGR 156
            MATDNKYDRQLRLWG  GQKAL EA++LL+ AG  GTETLKNLVLPG  VGR
Sbjct:    1 MATDNKYDRQLRLWGAQGQKALSEAHVLLLGAGPAGTETLKNLVLPG--VGR 50
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: A0A813IQ53_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IQ53_POLGL)

HSP 1 Score: 75.5 bits (184), Expect = 2.430e-16
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 141
            MATD+KYDRQLRLWGG GQKALMEA + ++ + A  TETLKNLVLPG
Sbjct:    4 MATDDKYDRQLRLWGGHGQKALMEAKVCMLGSSACATETLKNLVLPG 50
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: F0Y5U8_AURAN (OTU domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5U8_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 7.360e-16
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPGWSVGR 156
            MATDNKYDRQLRLWG +GQ+AL E+++LL+ AG  GTETLKNLVLPG  VGR
Sbjct:  431 MATDNKYDRQLRLWGANGQRALAESHVLLLGAGPAGTETLKNLVLPG--VGR 480
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: A0A7S3L0F1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L0F1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.950e-15
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 141
            MAT NKYDRQLRLWG +GQKAL E+ ++LV A A GTETLKNLVLPG
Sbjct:    1 MATTNKYDRQLRLWGAAGQKALAESCVVLVGATAAGTETLKNLVLPG 47
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: A0A7S3P241_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P241_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.370e-15
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 141
            MAT NKYDRQLRLWG +GQKAL E+ ++LV A A GTETLKNLVLPG
Sbjct:    1 MATTNKYDRQLRLWGAAGQKALAESCVVLVGATAAGTETLKNLVLPG 47
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: A0A7S3LZQ2_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZQ2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.550e-15
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 141
            MAT++KYDRQLRLWG +GQKALM+A+ILL+ A + GTETLKNLVLPG
Sbjct:    1 MATNDKYDRQLRLWGANGQKALMDAHILLIRADSVGTETLKNLVLPG 47
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: A0A7S2U6E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6E1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.970e-15
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 141
            MAT +KYDRQLRLWG SGQ+AL E+ I+L++A A GTETLKNLVLPG
Sbjct:    1 MATSDKYDRQLRLWGASGQRALQESKIVLIHATAVGTETLKNLVLPG 47
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BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Match: A0A482RVL1_9ARCH (ThiF domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVL1_9ARCH)

HSP 1 Score: 72.0 bits (175), Expect = 3.220e-15
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPG 141
            MAT++KYDRQLRLWG  GQK L EA+ILL+ A A G+ETLKNLVLPG
Sbjct:    1 MATNDKYDRQLRLWGVEGQKFLSEASILLIRADAVGSETLKNLVLPG 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61536.16849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G035_ECTSI1.070e-23100.00ThiF domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KYD4_9PHAE5.370e-22100.00NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A8J2S875_9STRA1.540e-1678.85NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A813IQ53_POLGL2.430e-1674.47Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
F0Y5U8_AURAN7.360e-1675.00OTU domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S3L0F1_9STRA1.950e-1576.60Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S3P241_9STRA2.370e-1576.60Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S3LZQ2_9STRA2.550e-1576.60NEDD8-activating enzyme E1 regulatory subunit n=2 ... [more]
A0A7S2U6E1_9STRA2.970e-1574.47Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A482RVL1_9ARCH3.220e-1574.47ThiF domain-containing protein n=1 Tax=archaeon Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61536contigEcto-sp13_S_contig61536:613..768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score97.4
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D7G035
Preferred nameNAE1
Model size156
KEGG koko:K04532
KEGG Pathwayko05010,map05010
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000278,GO:0000280,GO:0001101,GO:0001540,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008641,GO:0009414,GO:0009415,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009735,GO:0009755,GO:0009791,GO:0009965,GO:0009966,GO:0009968,GO:0009987,GO:0010016,GO:0010033,GO:0010035,GO:0010252,GO:0010389,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016874,GO:0016877,GO:0019538,GO:0019781,GO:0019899,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0031570,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033218,GO:0033314,GO:0033554,GO:0034641,GO:0035825,GO:0036211,GO:0042221,GO:0042277,GO:0042579,GO:0042592,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043516,GO:0043518,GO:0043523,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0044774,GO:0044818,GO:0045116,GO:0045786,GO:0045930,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048366,GO:0048367,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048827,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051321,GO:0051402,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0065008,GO:0070647,GO:0070887,GO:0070997,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0099402,GO:0140013,GO:1901214,GO:1901360,GO:1901564,GO:1901700,GO:1901796,GO:1901797,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902531,GO:1902532,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1905392,GO:2001020,GO:2001021
Exons1
EggNOG free text desc.NEDD8 activating enzyme activity
EggNOG OGsCOG0476@1,KOG2016@2759
Cds size156
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463857.7321565-CDS-Ecto-sp13_S_contig61536:612..7681681463857.7321565-CDS-Ecto-sp13_S_contig61536:612..768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61536 613..768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61536.16849.1prot_Ecto-sp13_S_contig61536.16849.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61536 613..768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61536.16849.1

>prot_Ecto-sp13_S_contig61536.16849.1 ID=prot_Ecto-sp13_S_contig61536.16849.1|Name=mRNA_Ecto-sp13_S_contig61536.16849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPGWSV
GR
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mRNA from alignment at Ecto-sp13_S_contig61536:613..768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61536.16849.1 ID=mRNA_Ecto-sp13_S_contig61536.16849.1|Name=mRNA_Ecto-sp13_S_contig61536.16849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61536:613..768+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACCGACAACAAGTACGACCGCCAGCTGAGGCTGTGGGGAGGGAG
CGGCCAGAAGGCGCTGATGGAGGCCAACATCCTCCTCGTGAACGCCGGCG
CAACCGGCACGGAGACCTTGAAGAATCTCGTCTTGCCAGGTTGGTCGGTC
GGTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61536:613..768+

>mRNA_Ecto-sp13_S_contig61536.16849.1 ID=mRNA_Ecto-sp13_S_contig61536.16849.1|Name=mRNA_Ecto-sp13_S_contig61536.16849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61536:613..768+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACCGACAACAAGTACGACCGCCAGCTGAGGCTGTGGGGAGGGAG
CGGCCAGAAGGCGCTGATGGAGGCCAACATCCTCCTCGTGAACGCCGGCG
CAACCGGCACGGAGACCTTGAAGAATCTCGTCTTGCCAGGTTGGTCGGTC
GGTCGG
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