mRNA_Ecto-sp13_S_contig61506.16844.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61506.16844.1
Unique NamemRNA_Ecto-sp13_S_contig61506.16844.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61506.16844.1 vs. uniprot
Match: A0A6H5L133_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L133_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.530e-21
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 MSEDSDRSDLFGRAISLDGGLLLTGAPKKHREVPEVQLIVSTGTASEVRI 150
            MSEDSDRSDLFGRAISL+GGLLLTGAP+KHREVPEVQLIVSTGTASEV +
Sbjct: 1523 MSEDSDRSDLFGRAISLNGGLLLTGAPRKHREVPEVQLIVSTGTASEVLV 1572
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BLAST of mRNA_Ecto-sp13_S_contig61506.16844.1 vs. uniprot
Match: D7FJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.630e-20
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 MSEDSDRSDLFGRAISLDGGLLLTGAPKKHREVPEVQLIVSTGTASEVRIE 153
            MSEDSDRSDLFGRAISLDG LLL GAPKKHREVPEVQLIVSTGTASE + E
Sbjct: 1601 MSEDSDRSDLFGRAISLDGSLLLAGAPKKHREVPEVQLIVSTGTASETKPE 1651
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61506.16844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L133_9PHAE5.530e-2192.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJQ0_ECTSI2.630e-2090.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61506contigEcto-sp13_S_contig61506:594..752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.0
Seed ortholog evalue8.7e-17
Seed eggNOG ortholog2880.D7FJQ0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.FG-GAP repeat
EggNOG OGs28JEB@1,2QRTB@2759
Cds size159
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463857.4790173-CDS-Ecto-sp13_S_contig61506:593..7521681463857.4790173-CDS-Ecto-sp13_S_contig61506:593..752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61506 594..752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61506.16844.1prot_Ecto-sp13_S_contig61506.16844.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61506 594..752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61506.16844.1

>prot_Ecto-sp13_S_contig61506.16844.1 ID=prot_Ecto-sp13_S_contig61506.16844.1|Name=mRNA_Ecto-sp13_S_contig61506.16844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MSEDSDRSDLFGRAISLDGGLLLTGAPKKHREVPEVQLIVSTGTASEVRI
EST
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mRNA from alignment at Ecto-sp13_S_contig61506:594..752-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61506.16844.1 ID=mRNA_Ecto-sp13_S_contig61506.16844.1|Name=mRNA_Ecto-sp13_S_contig61506.16844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61506:594..752- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGAGGACTCGGATCGGTCTGACCTATTCGGGCGGGCGATCTCATT
GGACGGCGGCTTGTTGTTGACTGGTGCCCCCAAGAAGCACAGAGAGGTGC
CGGAAGTGCAGCTGATCGTTTCCACCGGCACGGCCTCGGAGGTAAGAATT
GAGTCCACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61506:594..752-

>mRNA_Ecto-sp13_S_contig61506.16844.1 ID=mRNA_Ecto-sp13_S_contig61506.16844.1|Name=mRNA_Ecto-sp13_S_contig61506.16844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61506:594..752- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGAGGACTCGGATCGGTCTGACCTATTCGGGCGGGCGATCTCATT
GGACGGCGGCTTGTTGTTGACTGGTGCCCCCAAGAAGCACAGAGAGGTGC
CGGAAGTGCAGCTGATCGTTTCCACCGGCACGGCCTCGGAGGTAAGAATT
GAGTCCACT
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