mRNA_Ecto-sp13_S_contig6146.16836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: D8LDD4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD4_ECTSI) HSP 1 Score: 274 bits (700), Expect = 5.740e-91 Identity = 149/160 (93.12%), Postives = 151/160 (94.38%), Query Frame = 1
Query: 4 DMVLLEIGGKDVTGAMFDLVMDALVAAPAGEPIDLVFRDPSAAPAXXXXXXXXXX----IGVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 471
DM+LLEIGGKDVT AMFDLVMD LVAAPAG PIDLVFRDPSAA XXXXXXXXXX +GVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK
Sbjct: 101 DMILLEIGGKDVTSAMFDLVMDTLVAAPAGVPIDLVFRDPSAAAXXXXXXXXXXXPAVAMGVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 260
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A836CP36_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP36_9STRA) HSP 1 Score: 143 bits (361), Expect = 7.190e-40 Identity = 78/162 (48.15%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 7 MVLLEIGGKDVTGAMFDLVMDALVAAPAGEPIDLVFR---DPSAAPAXXXXXXXXXXIGVPCELTV-----GGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPK 468
MVL+ + G D T FD +MD L+ A +PI L F D P PCEL V + LKA+ GDNLRK L+AGKV +Y+ + MTNCNG GQCGTCV +VV +GW PRS++EA KLKGRP+S RL+CQT+++GDA I +P K
Sbjct: 85 MVLVSLNGIDCTTKDFDTIMDMLIGATDSQPIQLSFSLEVDDEQIPQPIKTG--------PCELHVLLPKGETMVLKARNGDNLRKVLMAGKVSIYEGLAVMTNCNGAGQCGTCVTKVV-GQGWSPRSDYEANKLKGRPQSHRLACQTLVEGDAVITVRPAK 237
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A7S3YA98_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA98_HETAK) HSP 1 Score: 117 bits (292), Expect = 2.720e-29 Identity = 72/168 (42.86%), Postives = 88/168 (52.38%), Query Frame = 1
Query: 7 MVLLEIGGKDVTGAMFDLVMDALVAAPAGEPIDLVFRDPSAA----PAXXXXXXXXXXIGVPCE-----LTVGGV---TLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDP-RSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 471
M LL + G+D T FD VMD L+AA + L P A + P E + + G L + G NLRK LLA VEVY + K+TNCNGGGQCGTC V+VV EG P RSEWE GKL+GRP S RL+C + G ++ KP KK
Sbjct: 96 MRLLAVNGQDCTSCTFDEVMDKLIAADGEVQVTLQSSSPKQTLVVPDAIQPLEAPKEKVEPPPEGPFEVIVLNGEEKRVLTIQAGANLRKELLANGVEVYAGMAKLTNCNGGGQCGTCAVEVVAGEGLGPARSEWEEGKLRGRPGSHRLACMNTVAGPVSVRVKPSKK 263
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A4D9D0U6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0U6_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.070e-26 Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 1
Query: 208 LKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEA-----GKLKGRPESQRLSCQTVIQ-GDATIVTKPPKK 471
++AK G NLRKTL A K++VYD++GKMTNCNG GQCGTCVV+V W RSE+EA GK G + RL+CQT ++ G+AT+V +PPKK
Sbjct: 88 IEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPS-WGLRSEYEADKILKGKKIGEGQEYRLACQTTVERGEATVVVRPPKK 180
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A7S1XJK9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJK9_9STRA) HSP 1 Score: 103 bits (258), Expect = 4.530e-24 Identity = 67/174 (38.51%), Postives = 92/174 (52.87%), Query Frame = 1
Query: 7 MVLLEIGGKDVTGAMFDLVMDALVAAP--------------AGEPIDLVFRDPSAA----PAXXXXXXXXXXIGVPCELTVGGVT-LKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVV-EAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQG--DATIVTKP 462
M LLE+ G+DV A FD MDAL+ AP A E ++ P+A PA G P + V G T + + G+ LR L KV+VYD++GK+TNCNG GQCGTC V V+ E + R++ E KL +P++ RL+CQ V++G + I TKP
Sbjct: 110 MALLEVAGQDVGAATFDEAMDALIGAPSVVELVLQGEAPAPAAEQVEPEEEVPAAVAEDVPAPAADDAEDVDDGRPASVVVDGSTKITVERGEILRNALRGSKVDVYDLMGKVTNCNGAGQCGTCAVAVLGETDALSERTDAELRKLGKKPDNWRLACQVVVEGGGELEIQTKP 283
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A098TL89_9CYAN (Iron ABC transporter substrate-binding protein n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TL89_9CYAN) HSP 1 Score: 98.6 bits (244), Expect = 5.990e-24 Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 199 GVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVE-AEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKP 462
G + A G NLR L V++Y VGKMTNC G GQCGTCVV++VE AE PRS++E KLK +P++ RL+CQ V+QG T+ TKP
Sbjct: 10 GREVVAADGANLRLQALENGVDIYTFVGKMTNCGGYGQCGTCVVEIVEGAENLSPRSDFETRKLKKKPDTYRLACQVVVQGPVTVKTKP 98
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A0C1US26_9CYAN (Iron ABC transporter substrate-binding protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1US26_9CYAN) HSP 1 Score: 95.1 bits (235), Expect = 1.490e-22 Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 214 AKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVE-AEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 471
A G NLR + +++Y +VGKM NC G GQCGTCVV++ E +E PR++ E KL+ RPE+ RL+CQT++ GD T+ TKP KK
Sbjct: 15 AADGANLRYKAMENDIDIYTLVGKMMNCGGYGQCGTCVVEITEGSENLSPRTQVEERKLRKRPENCRLACQTLVNGDITVKTKPKKK 101
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: K9ZKA7_ANACC (Ferredoxin n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) TaxID=272123 RepID=K9ZKA7_ANACC) HSP 1 Score: 94.4 bits (233), Expect = 2.740e-22 Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 223 GDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEA-EGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKP 462
G NLR + +++Y ++GKMTNC G GQCGTC+VQVVE E PR+++E K K +P++ RL+CQT++ G ++VTKP
Sbjct: 18 GANLRLKAMENNIDIYTLIGKMTNCGGAGQCGTCIVQVVEGLENLSPRTDFENRKFKKKPDNYRLACQTLVNGPVSVVTKP 98
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A8J5XJU3_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJU3_DIALT) HSP 1 Score: 98.2 bits (243), Expect = 5.460e-22 Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query: 223 GDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKP 462
G LR LL KV+VY MVGKMTNC G GQCGTCVV + G PR+ E KLKG+P S RL+CQTV+ GD T+ TKP
Sbjct: 191 GAILRTELLKAKVDVYTMVGKMTNCGGAGQCGTCVVDI-SGGGCSPRTAVEEAKLKGKPASYRLACQTVLTGDTTVATKP 269
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: L8LWY8_9CYAN (Ferredoxin n=2 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8LWY8_9CYAN) HSP 1 Score: 93.6 bits (231), Expect = 7.890e-22 Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 223 GDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEA-EGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 471
G NLR+ L K+++Y + GK+TNC G GQCGTCVV++VE E PR+ +E KLK +P+S RL+CQ + G T+ TKP K
Sbjct: 23 GANLRERALENKIDIYTLKGKLTNCGGYGQCGTCVVEIVEGMENLSPRTAFEQRKLKKKPDSYRLACQATVNGSVTVATKPKLK 106 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6146.16836.1 >prot_Ecto-sp13_S_contig6146.16836.1 ID=prot_Ecto-sp13_S_contig6146.16836.1|Name=mRNA_Ecto-sp13_S_contig6146.16836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp MVLLEIGGKDVTGAMFDLVMDALVAAPAGEPIDLVFRDPSAAPAPAEAPAback to top mRNA from alignment at Ecto-sp13_S_contig6146:4490..6008- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6146.16836.1 ID=mRNA_Ecto-sp13_S_contig6146.16836.1|Name=mRNA_Ecto-sp13_S_contig6146.16836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6146:4490..6008- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6146:4490..6008- >mRNA_Ecto-sp13_S_contig6146.16836.1 ID=mRNA_Ecto-sp13_S_contig6146.16836.1|Name=mRNA_Ecto-sp13_S_contig6146.16836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6146:4490..6008- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |