mRNA_Ecto-sp13_S_contig6142.16829.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6142.16829.1
Unique NamemRNA_Ecto-sp13_S_contig6142.16829.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6142.16829.1 vs. uniprot
Match: D7G7D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D8_ECTSI)

HSP 1 Score: 551 bits (1420), Expect = 1.400e-196
Identity = 275/306 (89.87%), Postives = 281/306 (91.83%), Query Frame = 1 
Query:    1 MPPTRPLSTPCRYGYNCTRPDCFYTHPKDMNKDRPKDERPLCTXXXXXXXXXXXXXXXNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPNDGKDRCDFVAAVPVRVAYNDWKRYRGISATGTPDGVPSNPQQIQLYPRTRKGERLLQDAQNRVGMRWSPTPYRPWKTLERMATHDQAREDRHWESNQNHYLLCAGYEAFPPGSGVYIELSVTDMMKLEDAGDGQRAGARVAREVLGLPDANGQKWFVFSVSRPDEAHEEAFNITIRAIVDTSKMPAVPRRPEPSRAPQLAQPPMPPP 918
            MPPTRPLSTPCRYGYNCTRPDCFY HPKDM+KDRPKDERPLCT    XXXXXX     NGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPNDGKDRCDFVAAVPVR+AYNDW+RYRGIS TGTPDGVPSNPQQIQLYPRTRKGERLLQD QNRVGMRWSPTPYRPWKTLERMATHDQ     +WESNQ+HYLLCAGYEAFPPGSGVYIELSVTDMMK EDAGDGQRAGARVAREVLGLP ANGQKWFVF VSRPDEAHEEAFNITIRAIVDTSKMP VPR  EP RAPQLAQPP+ PP
Sbjct:    1 MPPTRPLSTPCRYGYNCTRPDCFYAHPKDMHKDRPKDERPLCTFGSGXXXXXXHNDHPNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPNDGKDRCDFVAAVPVRLAYNDWQRYRGISTTGTPDGVPSNPQQIQLYPRTRKGERLLQDPQNRVGMRWSPTPYRPWKTLERMATHDQ-----YWESNQDHYLLCAGYEAFPPGSGVYIELSVTDMMKAEDAGDGQRAGARVAREVLGLPGANGQKWFVFHVSRPDEAHEEAFNITIRAIVDTSKMPGVPRPHEPGRAPQLAQPPVLPP 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6142.16829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7D8_ECTSI1.400e-19689.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6142contigEcto-sp13_S_contig6142:3..5325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size918
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionSterile alpha motif/pointed domain
Ec32 orthologEc-04_003200.1
Cds size918
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6142.16829.1prot_Ecto-sp13_S_contig6142.16829.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6142 3..5325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.0040832-CDS-Ecto-sp13_S_contig6142:2..741681463856.0040832-CDS-Ecto-sp13_S_contig6142:2..74Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6142 3..74 -
1681463856.0156908-CDS-Ecto-sp13_S_contig6142:1103..12231681463856.0156908-CDS-Ecto-sp13_S_contig6142:1103..1223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6142 1104..1223 -
1681463856.0294888-CDS-Ecto-sp13_S_contig6142:1651..18071681463856.0294888-CDS-Ecto-sp13_S_contig6142:1651..1807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6142 1652..1807 -
1681463856.0398536-CDS-Ecto-sp13_S_contig6142:2841..30481681463856.0398536-CDS-Ecto-sp13_S_contig6142:2841..3048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6142 2842..3048 -
1681463856.050256-CDS-Ecto-sp13_S_contig6142:3632..38421681463856.050256-CDS-Ecto-sp13_S_contig6142:3632..3842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6142 3633..3842 -
1681463856.0607984-CDS-Ecto-sp13_S_contig6142:5172..53251681463856.0607984-CDS-Ecto-sp13_S_contig6142:5172..5325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6142 5173..5325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6142.16829.1

>prot_Ecto-sp13_S_contig6142.16829.1 ID=prot_Ecto-sp13_S_contig6142.16829.1|Name=mRNA_Ecto-sp13_S_contig6142.16829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=306bp
MPPTRPLSTPCRYGYNCTRPDCFYTHPKDMNKDRPKDERPLCTFGSGCFR
KVCHNDHPNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPND
GKDRCDFVAAVPVRVAYNDWKRYRGISATGTPDGVPSNPQQIQLYPRTRK
GERLLQDAQNRVGMRWSPTPYRPWKTLERMATHDQAREDRHWESNQNHYL
LCAGYEAFPPGSGVYIELSVTDMMKLEDAGDGQRAGARVAREVLGLPDAN
GQKWFVFSVSRPDEAHEEAFNITIRAIVDTSKMPAVPRRPEPSRAPQLAQ
PPMPPP
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mRNA from alignment at Ecto-sp13_S_contig6142:3..5325-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6142.16829.1 ID=mRNA_Ecto-sp13_S_contig6142.16829.1|Name=mRNA_Ecto-sp13_S_contig6142.16829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6142:3..5325- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCCCACACGGCCCCTTTCGACCCCCTGTCGGTACGGCTACAACTG
CACCAGACCCGACTGCTTCTACACCCACCCCAAGGACATGAACAAGGATC
GGCCAAAGGACGAGAGGCCGCTGTGCACCTTCGGCAGCGGATGCTTCAGG
AAGGTGATGATGATTAGAGATCGGTGGGAAACATGAACATTACACCTAAG
TCGGGATCACTCTTGTCACTTTCTTGATGTGTCAAAAGCCCGCGCTTTGC
TCCCGTTCTTTTCAAGGCTCATATCGGTATTTTTGTAGGTCTGCAACGTC
TACGGCGGTGTCCATCAAGGAAAACGTGTTAGTGTTGGGGTGGTGACTGG
CCATCGTGGTATTTTTCGTACGGGGCCCTCCCCTCCCCTCCCCTCCCCTC
CCCTCCACTCCCTCCTTTTGACCGAGAAGCACCACATGCGAAGCCTCCGG
CAATCACGGACACGATCAATCAGCAATTTGGAGGACTAGACCCTGTTTCT
GGAATATGAACGCGAAGGTCTCGACGGTATTCCCAATCCAATGAAGGATA
AAGCAGGGCAGGACGTCGGTAGCCCTTGGGAGGGTAGTGCCCTCCTTGCA
GGCCATCTTAACCACCTTCTGCGCATTCCCACCTGATAGTAAGGCACAGC
GAGCGCTGCTGCTGTCCTTCAAGAGATTGTAAATAAGTGAGTCCGTCGTC
GCGGGCCTTCCAGATTGAACAACGCGATCTCCAACGTCGAGTTGCCCAAA
AAGGTTAAGGTTCCTAAAGCTTCCGGCCATCAGTCGCTCCGTCGCTCCTT
TCTGCGTCCAGACTCGTCACTTGCTGTAAATGATCAGAAATTGATGCAGG
AGGTCGGCGGTAGTCGGTTTGTCAGGAGTGATGGAACTCAAGAGTTTCTT
TTTGAGGGGAGGTTCCCACCAAAGGACAAAACAAATGATATCCGACAAAC
CCCAACACTCGATTGTCGCCGCACTTGACAACAGCGGTGTGTCAGGCAAG
GCTGTACAGCGAACATATTGCTTTGTTGGCAACCATCACAAGCTGCAAGG
AAAGGGCAACCGTAGCGACCCTCTCAAAGTTTATTGAGGTTGAGATTGAG
GGTGATGGACTCGGGATGGGCCAGCTTCGGATGGTAGCCTTGCTCGGCAG
TCTGCAGCTAGGCAGGGTAGCTCTTCCAGGCCAGCTGTCCCTTCCCTTTC
GGGTGCGGCTGCTGCTGGTATTTCCGCGCTCTTTGGCGGAACGGCTCTTT
TTCGGCTTCCTCCCCTCCTTGGCTGCCGCGCCCTGTTCCGGCTCTTCCCC
CCCCCCGTGGACGATTTTGCGTGACCCCTGTTTTTTCTGCTGCACTTGCT
GCTGCAGCTCCGGGTGTTGCGCGTCCTCACTGGCCCTCCGTTTACACCCC
TCAGCAGAACCTTCCCTTCTTTACCCCGCTTTTGACAACCAAACCAATAC
CGATGCGGCTTGTCAATGTCTACGCTCCGACAGGTATGCCACAACGACCA
CCCCAACGGACGCATTATGGACCAGCTGAGAGCGAGCATCGACTACTGCT
CGTCTTGGATGCTGGTGAGGCCGCACGAGCTGGTGCGGGTTTCCGCCGCG
TTCCAGGCGGCGTTTCCCGCGCCCAACGACGGCAAGGACCGGTGCGACTT
CGTGGCTGCCGTTCCTGTGAGGGTGGCATACAACGACTGGAAGGTGAGTT
TTATTTGTCGTTGTTGCTGTTGCTGCTTTGGTTGTTCGTGGTGGGCATTG
CCTTGACTGTAGTTGTCGGCCTTTGCTTTGGTTGCTGAAAGTTGCTGTTG
CTGCTGTTGTTGTTTCAAAAGGATACTGGAAGGGAGGGAGAGAAAAAGGA
ATTTTTGTGCCGTACCGCACGAGAGAGGTCAGAGGGTGTGTTTGTGTTCG
TCAGGATCATTCTGAGTTGCGCTGCTTACCTTCGGCGAAACATGGGCGCC
AAGAGGAAACGCCTGTTTGCCTATCCCTAATTGAGTCACCCCCAACTTGG
AGGGCGGCAATAAGGAGAGCTCGCTTTGTTTGACCTTTAGGGCTTTGCCT
TACGTACCAGAGCTGAAACGCTTATTTTTGTGTCGATATACGGAATGAGG
TTAAGAGGACAAGACACAAGTGCGAGAACGGTCAGAGACAGAGGGGAGGG
GAGCGGGAACGCTGGCAGCTACAATATATCCTGTGTAACCTCGTCCTTGG
AGCACCCACCCCACCCCTATCTCCGTGCCCCCCCCTCCCCGGAATGCTCT
CAACACACTTGCTCGGGCTATCTCCAGCGATATCGGGGTATTTCAGCCAC
GGGCACCCCCGATGGGGTCCCAAGCAATCCGCAACAGATCCAGCTCTACC
CCCGGACCCGTAAGGGAGAACGCCTGCTGCAGGACGCCCAGAATCGCGTC
GGGATGCGGTGGTCACCGACGCCGTACCGGCCGTGGAAGACGCTGGAGAG
AATGGCCACCCACGACCAGGCGAGAGAGGATCGCGTTTGACTTGTTGTTT
GCATGCTTTGGGGGACACACGATCTGGGTGTTGATGATATGACGTTTTAC
GTGTTTTTTGAATGCTTTGCGGGGCACACAAGCTGGTGTTGCTCTTTTCT
TGTTGCCTCCACTACCGAAGAAGTACAGGGGGGGAAGGTTTCTTCTGACG
AACAATCACACGAAACTATTTTTTTTTACGATTATGTTTGGCGAATGTTA
ATTCTCTCGGCAGTAAACGATTCCGATGTCACCTGCTGGGTCGTTGTTGC
TGTTTGTGTCGTTGTTTGTAAGATCGCACTAACTCGGCTTGCCGGTGTAC
TTGTGGTGGCAATATGGAGGCTTTCAGAGGTGCAGTACTGGTATTTTTCG
GCCAGTTCTTTCGCGCAGATCTCAGTTGGTGGGGTTCAGATTTGCGGGGT
ATGTACGTATGTGGCAAAAAGTGCTGTTTTTTGTCTGAGGCAGCACCCCA
GATCACCGCAGCCTAAGCCTCAGATAACCCAGTTTGACCAACTTGTTAGC
ATCTGAGGTGGAGAGGTTCCGGTTCCCCCGCCTCAGCGGATTTGTGGAAA
CATGGCACAAAGCGCAGAGATTGCATGAGTGTTAGCTATCATTAGACAGG
GAATAGTAACCGCTCGCTAGGTTCGTTCTACAAATAAATAACTGTTGCCG
ACGTGCCCATGTGGCGATGTAGAATTCAATTCATGGTGGAATCGCGGGCG
AAGGTCGTGTTCTAAGTTGAAGGCACACCCAAGTTTTTTTTCTCCCTCTC
GCTTGGTCGGGCAGAAATGAAAAAACCACAAGACAACACCGAGACCATGG
GCTTTGAAGCCACCTTCGCTACACACTGAAATCAACTCTGAAGTCCTTTT
CCGAAATCAACTTTGTAGGCGCATCTATGTGGTTGGATTGTCTGAGCCGA
CGATTCGGGCGAAAGATTGGGGGAGAACGAAACCGGACGCGTCTCCTAAA
CGTCGCCGATCGAGGTGCCTCTGCGACTGTAACGCTCAACTTCACGTCCC
CGCCTACCTGCTGCGCAGCATTGGGAAAGCAACCAGAACCACTACCTCTT
GTGCGCGGGGTACGAGGCCTTCCCCCCCGGGAGCGGCGTGTACATCGAGT
TGTCCGTGACCGACATGATGAAGCTCGAGGACGCCGGGGACGGGCAGCGG
GCGGGCGCGCGGGTGGCGCGGGAGGTGAGCGACGAAGGGGGGCGAGGGGC
AGACAGGCAGGGACAAGGAAATAGTGGCGTGTGTGTTATTTGGTAGGCTT
ATGTTGTTGGTGTTGAACGCGATAACCGGCTTATTAATAAAAACACGTCA
GTCAGGCTTTCAGCAGGATAATACCTGCGCGGAGGCTTCTCTCTGATGTT
TTTCTTTGGTTAGTTTGCGGCGCTAACCGGTTGAAAAGGCGTTAAGTCTG
AATGGCAGGATGGCACGTGCGATCACGTGCTCTTTTTGCTCACCCGACAG
GGCGCTTGTGGAGGAGGTCGGATGACACCTATTTAGTCTCGGGTTCAGAG
TACTTCCACAAGACATTTCACACACTAAACAAACGCTCTTACTTCTCGTG
CCTGCGCCGTTGGTGCTCATCATCCTATTGGGCGCGCATCACCCTGAACT
AGGTATTGGGGTTGCCTGACGCCAATGGCCAGAAGTGGTTCGTGTTTTCC
GTGTCTCGGCCAGACGAGGCACACGAGGAGGCGTTCAACATAACCATCCG
GGCGATCGTGGACACGAGCAAGGTGAGTCAGTCGTTTCCTACAGCAGTCT
CGGTGGCGCAAGCCCTCCTTTGCGAGAGTACAACACACAAGGTCAGGTCT
CCCCTCTCCCACGGAGTGGTTGGCGAAGCGGAAGAACGACTACACAATGG
TGGTGGTGGTACCGGTATTCCGTACCGCGGTCCCGGTGGAGCGGGTCACT
AAACACCGCGGTAGACATCGCTTTTCACTGGATTTAGCTTCCACACTGAA
AGCTGCGTATTCCCCAGCACTCAAGTAGTAGTGCGGTGTCCCGATATATA
GATCGTCTGCCCGATGTTGGAAAGTGTTTTTTGACTTGAAAATGTTTACA
TTGATTAAATCAGCCTCTGTGTGTTAGGTCCCCGGTTTGACAACTGAACG
GCTACGTTTGTTTCTGTACTTCGAATCTGTATCCACAAGTCGCTTCCTCT
GTGTACCCCCACCGCTCACCACGCCGTCGGCTCTGTAGATTTTTCATGCC
GCGATTGTTTTTGCTTGTCACTACACCGCGGTACGATACGGTACGGTAGA
TATTTCGCGACCACCACCACTGCCCTTGTGCTGAAGTGCCAATGGGCGCG
GGGTCTACGCACTCCCTTACGTACTAACGAGATGGGAATAGCTTAGAACC
TTATCCTCTACGGGACAGACCAGCGCTGCCGTGCGATTGGTTGTTGTGGC
GCTCCTCACCCCAAGGGCTGAACGGCAGCGCGCTTCTTTTTTGGCGCCAA
TTCTGCGAAACTGAAGTCGTTCGTGTGTCGATTGTGCAGTCTGCTTCGTC
TCACAACGAAAGGCGATTTGTTCTGGAAAAGTTCCGGAAATCATGGCACC
CAAAAAACCCTGTGACTGTTTGGCCAATTGCAACGAGATGCAGCGTTAGG
CCCGCACCCACGCTTATGTATCTGATCGGGAGAGCACGCATCAAGTGATC
CCCCCCTCCCTTTTGCCCTCCCTCTGGTACCCCTGCTTCCGTCCCCCCCT
GTCCCCCCCCGGTTGGTGAAATATTTTTGGCTGTGTATGCCCTACCGACA
GATGCCTGCGGTACCCCGCCGTCCCGAGCCTAGCCGAGCACCGCAGCTGG
CACAGCCCCCGATGCCGCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6142:3..5325-

>mRNA_Ecto-sp13_S_contig6142.16829.1 ID=mRNA_Ecto-sp13_S_contig6142.16829.1|Name=mRNA_Ecto-sp13_S_contig6142.16829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6142:3..5325- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCCCACACGGCCCCTTTCGACCCCCTGTCGGTACGGCTACAACTG
CACCAGACCCGACTGCTTCTACACCCACCCCAAGGACATGAACAAGGATC
GGCCAAAGGACGAGAGGCCGCTGTGCACCTTCGGCAGCGGATGCTTCAGG
AAGGTATGCCACAACGACCACCCCAACGGACGCATTATGGACCAGCTGAG
AGCGAGCATCGACTACTGCTCGTCTTGGATGCTGGTGAGGCCGCACGAGC
TGGTGCGGGTTTCCGCCGCGTTCCAGGCGGCGTTTCCCGCGCCCAACGAC
GGCAAGGACCGGTGCGACTTCGTGGCTGCCGTTCCTGTGAGGGTGGCATA
CAACGACTGGAAGCGATATCGGGGTATTTCAGCCACGGGCACCCCCGATG
GGGTCCCAAGCAATCCGCAACAGATCCAGCTCTACCCCCGGACCCGTAAG
GGAGAACGCCTGCTGCAGGACGCCCAGAATCGCGTCGGGATGCGGTGGTC
ACCGACGCCGTACCGGCCGTGGAAGACGCTGGAGAGAATGGCCACCCACG
ACCAGGCGAGAGAGGATCGCCATTGGGAAAGCAACCAGAACCACTACCTC
TTGTGCGCGGGGTACGAGGCCTTCCCCCCCGGGAGCGGCGTGTACATCGA
GTTGTCCGTGACCGACATGATGAAGCTCGAGGACGCCGGGGACGGGCAGC
GGGCGGGCGCGCGGGTGGCGCGGGAGGTATTGGGGTTGCCTGACGCCAAT
GGCCAGAAGTGGTTCGTGTTTTCCGTGTCTCGGCCAGACGAGGCACACGA
GGAGGCGTTCAACATAACCATCCGGGCGATCGTGGACACGAGCAAGATGC
CTGCGGTACCCCGCCGTCCCGAGCCTAGCCGAGCACCGCAGCTGGCACAG
CCCCCGATGCCGCCGCCG
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